Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016103.1

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

7956 .. 9405

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016103.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgcaatctccaaaggatgacacggtggcatgtgtgatggcattggaggctgctttgcttccatgcttgcctgccagagagcttcaagcaatagaccgttcaccgcacccgtctcatcagattgatgttgagagacatgccagagattttatggaagctgccaaaaagcttcagctctatttttttggtctgcaacgtgaggatctgcccacgaatgctgaaaaactcagaaaggagattgctgtgatggaagaggagttgaaggtaaagaatgagattatcaagaagaatgaaaggttaatccaagggtggaaaaaggagctgaaagaccaattggacagacacaatactgagctcgagaaagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

14.23

Weight (kDa)

6.1

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	86, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	6 cut(s)	82, 158, 169, 175, 322, 355
AluI	AGCT	6 cut(s)	82, 158, 169, 175, 322, 355
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	117, 127
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	50, 158
AsuHPI	GGTGA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	37, 145
BccI	CCATC	2 cut(s)	31, 241
BcoDI	GTCTC	2 cut(s)	117, 127
BisI	GCNGC	2 cut(s)	51, 159
BlsI	GCNGC	2 cut(s)	52, 160
BmeT110I	CYCGRG	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	241, 342
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	37, 145
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	117, 127
BsmBI	CGTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	240, 343
BspPI	GGATC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	2 cut(s)	25, 98
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	68, 72
BstDEI	CTNAG	2 cut(s)	227, 351
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	2 cut(s)	117, 127
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	33, 140
BstV1I	GCAGC	2 cut(s)	37, 145
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	68, 72
CviAII	CATG	3 cut(s)	30, 63, 137
CviJI	RGCY	7 cut(s)	50, 82, 158, 169, 175, 322, 355
CviKI_1	RGCY	7 cut(s)	50, 82, 158, 169, 175, 322, 355
DdeI	CTNAG	2 cut(s)	227, 351
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	33, 66, 140
FaiI	YATR	4 cut(s)	31, 64, 138, 152
FatI	CATG	3 cut(s)	29, 62, 136
Fnu4HI	GCNGC	2 cut(s)	51, 159
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	51, 159
GluI	GCNGC	2 cut(s)	51, 159
Hin1II	CATG	3 cut(s)	33, 66, 140
HindIII	AAGCTT	1 cut(s)	167
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	120, 230
Hpy188III	TCNNGA	2 cut(s)	283, 358
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	25, 98
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	4, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	227, 351
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	33, 66, 140
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	3 cut(s)	84, 88, 154
Lsp1109I	GCAGC	2 cut(s)	37, 145
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	263, 298
MfeI	CAATTG	1 cut(s)	332
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	332
MnlI	CCTC	3 cut(s)	40, 193, 247
MseI	TTAA	1 cut(s)	299
MunI	CAATTG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	33, 66, 140
NspI	RCATGY	2 cut(s)	33, 140
PaeR7I	CTCGAG	1 cut(s)	356
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	52, 160
Psp124BI	GAGCTC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	51, 159
Sau3AI	GATC	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	9 cut(s)	84, 160, 171, 177, 199, 267, 299, 324, 357
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	25, 98
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	357
TasI	AATT	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseI	GCWGC	2 cut(s)	50, 158
TspDTI	ATGAA	1 cut(s)	306
XceI	RCATGY	2 cut(s)	33, 140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.