Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

12706783 .. 12708280

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTGAGAGACAAGCGGTAGATCAGCAGCAGCAAAGTGATGCACAGATGCAATCTCCAACGGCTCCGAGGGAAGACATGGTTTCGTGTGTAATGGCGCTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCTAAGGAGCTTCAAGCGATTGACCGCTCTCCCCTCCCCTCTCATCAGATTGATGTGGAGAGGCATGCCAGAGACTTTATGGAAGCTGCCAAAAAGCTTCAACTGTACTTCATCGGTCTGCAACGTGAGGATCAGCCAACGAAGGCTGAGCAACTAAGAAAGGAGATTGATGCAATGGAAGAGGAGTTGAGGATAAAGACTGAGATTATTAAGAAGCATGAAAGGTTGATCCAAGGGTGGAAGAAGGAGCTCAAAGACCATTTGGACAAGCACAACACTGAGCTTGAGAGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.42

Weight (kDa)

5.58

Isoelectric Point (pI)

65.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	29 - 127	2.5e-24	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	2 cut(s)	17, 154
AclWI	GGATC	2 cut(s)	267, 352
AfaI	GTAC	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	143, 230
AluBI	AGCT	5 cut(s)	139, 215, 226, 379, 412
AluI	AGCT	5 cut(s)	139, 215, 226, 379, 412
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	4, 195
AlwI	GGATC	2 cut(s)	267, 352
ApeKI	GCWGC	4 cut(s)	28, 31, 107, 215
AspLEI	GCGC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	40, 43, 94, 202
BceAI	ACGGC	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	4, 195
BfaI	CTAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	4 cut(s)	29, 32, 108, 216
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	4 cut(s)	30, 33, 109, 217
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	3 cut(s)	31, 39, 289
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	68, 361
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	68, 361
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	267, 321, 399
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	40, 43, 94, 202
BsiHKAI	GWGCWC	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	4, 195
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	22, 259, 357
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	17, 154
BspCNI	CTCAG	3 cut(s)	268, 322, 400
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	267, 352
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	68, 361
BssMI	GATC	3 cut(s)	22, 259, 357
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	125, 129, 195
BstDEI	CTNAG	6 cut(s)	6, 132, 276, 284, 330, 408
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	25, 262, 360
BstMAI	GTCTC	2 cut(s)	4, 195
BstMBI	GATC	3 cut(s)	22, 259, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	4 cut(s)	40, 43, 94, 202
BstV2I	GAAGAC	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	3 cut(s)	125, 129, 195
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	79, 120, 194, 347
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	6 cut(s)	6, 132, 276, 284, 330, 408
DpnI	GATC	3 cut(s)	24, 261, 359
DpnII	GATC	3 cut(s)	22, 259, 357
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	4 cut(s)	82, 123, 197, 350
FaiI	YATR	5 cut(s)	80, 121, 195, 209, 348
FatI	CATG	4 cut(s)	78, 119, 193, 346
Fnu4HI	GCNGC	4 cut(s)	29, 32, 108, 216
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	29, 32, 108, 216
FspBI	CTAG	1 cut(s)	424
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	4 cut(s)	29, 32, 108, 216
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	101
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	82, 123, 197, 350
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	69, 177
HpyAV	CCTTC	2 cut(s)	265, 367
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	44, 52, 250, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	6 cut(s)	6, 132, 276, 284, 330, 408
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	82, 123, 197, 350
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	22, 259, 357
LmnI	GCTCC	3 cut(s)	70, 136, 376
LpnPI	CCDG	3 cut(s)	86, 141, 211
Lsp1109I	GCAGC	4 cut(s)	40, 43, 94, 202
LweI	GCATC	3 cut(s)	31, 39, 289
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	1 cut(s)	253
MalI	GATC	3 cut(s)	24, 261, 359
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	3 cut(s)	22, 259, 357
MboII	GAAGA	3 cut(s)	86, 320, 382
MhlI	GDGCHC	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	63, 97, 173, 178, 183, 250, 304, 312, 411
MseI	TTAA	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	3 cut(s)	22, 259, 357
NlaIII	CATG	4 cut(s)	82, 123, 197, 350
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	30, 33, 109, 217
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	29, 32, 108, 216
Sau3AI	GATC	3 cut(s)	22, 259, 357
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	7 cut(s)	141, 217, 228, 256, 356, 381, 414
SfaNI	GCATC	3 cut(s)	31, 39, 289
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	197
SsiI	CCGC	2 cut(s)	17, 154
SspMI	CTAG	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	256
TaqII	GACCGA	1 cut(s)	233
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	4 cut(s)	28, 31, 107, 215
TspDTI	ATGAA	2 cut(s)	229, 363
TspRI	CASTG	1 cut(s)	412
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.