Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

16702713 .. 16703260

Gene Structure 548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1102600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCATAAGCAGAGTTTTTTTTATTCAATCATTTTGTCAATCCTTATGACTGTCACTCACTCTAAATTAGTGAACGAAGTTGATGTGGAGAGGCATGCCAGAGACTTTATGGAAGCTGCCAAAAAGCTTCAACTGTACTTTATCGGTCTGCAACGTGAGGATCTGCCAACGAAGGCTGAACAACTAAGAAAGGAGATTGATGCAATGGAAGAGGAGTTGAGGATAAAGACCGAGATCATCAAGAAGCATGAAAGGTTGATCCAAGGGTGGAAAAAGGAGCTGAAAGACCAATTGGACAAGCACAACACTGAGCTTGAGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.99

Weight (kDa)

6.98

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	19 - 94	2.6e-18	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	168, 253
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	27, 131
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	116, 127, 280, 313
AluI	AGCT	4 cut(s)	116, 127, 280, 313
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	168, 253
ApeKI	GCWGC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	96
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	160, 234, 258
BspCNI	CTCAG	1 cut(s)	301
BspPI	GGATC	2 cut(s)	168, 253
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	160, 234, 258
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	52, 135
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	185, 309
BstKTI	GATC	3 cut(s)	163, 237, 261
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	160, 234, 258
BstNSI	RCATGY	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	95, 248
CviJI	RGCY	5 cut(s)	116, 127, 176, 280, 313
CviKI_1	RGCY	5 cut(s)	116, 127, 176, 280, 313
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	185, 309
DpnI	GATC	3 cut(s)	162, 236, 260
DpnII	GATC	3 cut(s)	160, 234, 258
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	98, 251
FaiI	YATR	5 cut(s)	6, 47, 96, 110, 249
FatI	CATG	2 cut(s)	94, 247
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	98, 251
HindIII	AAGCTT	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	52, 135
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	4, 151, 203
HpyF3I	CTNAG	2 cut(s)	185, 309
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	98, 251
Kzo9I	GATC	3 cut(s)	160, 234, 258
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	162, 236, 260
MboI	GATC	3 cut(s)	160, 234, 258
MboII	GAAGA	1 cut(s)	221
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	2 cut(s)	65, 290
MnlI	CCTC	5 cut(s)	84, 151, 205, 213, 312
Mph1103I	ATGCAT	1 cut(s)	6
MunI	CAATTG	1 cut(s)	290
NdeII	GATC	3 cut(s)	160, 234, 258
NlaIII	CATG	2 cut(s)	98, 251
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	160, 234, 258
SetI	ASST	6 cut(s)	118, 129, 157, 257, 282, 315
SfaNI	GCATC	1 cut(s)	190
SgeI	CNNG	8 cut(s)	107, 111, 167, 244, 253, 260, 275, 310
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	2 cut(s)	65, 290
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	52, 135
TaiI	ACGT	1 cut(s)	157
TaqII	GACCGA	2 cut(s)	134, 245
TasI	AATT	2 cut(s)	65, 290
TatI	WGTACW	1 cut(s)	135
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	313
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.