Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Forward (+)

26339736 .. 26366433

Gene Structure 26698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGCAGAATATCTCAAGGTTGTGAAGCTCTCGCTGGGAGACGCGATTCTACTTTTGTTTGGAAAACCAGAGAAGTAAAATTGGAGAAGAGGAGGGAAAGGAATACCGAGAAAACTAAGAAAAAGAGGCGGGGAAAGGCACAAGGGGATTGTCTCGCCGTTCAAGGAGTTGGTCGTTTTGAGATGGGTGATGCAGCAGAGATGCAATCTCCAAAAGAAGAGATGGTGGCATGTGTGAGGGCACTGGAGGATGCTTTGCTTCCATGCTTGCCTGCCCGAGAGCTCCAAGCAATTGATCGTTCTCCCCACCCTTCTCATCAGATTGATGTGGAGAGACATGCCAGAGACTTTATGGACGCTGCCAAAAAGCTTCAGCTGCATTTTCTTGGTCTGCAACGTGAGGACCAGCCAACAAATGCTGAACAACTTAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAATATAAAGACTGAGATCATCAAGAAGCATGAAAGGCTAATCCAGGGGTGGAAAAAGGAGCTAAAAGACCAATTGAACAAGCACAATACCGAGCTTGAGAAGAAAACTGTATCAGAAGCATATACTCACTCCCTCAGTTCATTAGATGAAGCAAGATCAAGACAACTATTCGAAATCTTGTGGGCTTTGCAAGAAAAACGAATCCAGAAAAAAAATGCAAGCGAACATGAAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

27.05

Weight (kDa)

8.96

Isoelectric Point (pI)

66.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	78 - 175	2.5e-24	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	164, 463, 538
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	7 cut(s)	29, 283, 370, 376, 523, 556, 695
AluI	AGCT	7 cut(s)	29, 283, 370, 376, 523, 556, 695
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	4 cut(s)	34, 158, 328, 339
Ama87I	CYCGRG	1 cut(s)	276
ApeKI	GCWGC	3 cut(s)	194, 359, 376
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	633
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	206, 346, 363
BccI	CCATC	3 cut(s)	178, 217, 442
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	506
BcoDI	GTCTC	4 cut(s)	34, 158, 328, 339
BisI	GCNGC	3 cut(s)	195, 360, 377
BlsI	GCNGC	3 cut(s)	196, 361, 378
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	3 cut(s)	181, 192, 241
BpmI	CTGGAG	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	465, 610
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	106, 470
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	206, 346, 363
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	276
BsmAI	GTCTC	4 cut(s)	34, 158, 328, 339
BsmBI	CGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	244, 285
Bsp143I	GATC	3 cut(s)	295, 477, 617
BspACI	CCGC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	466, 609
BspFNI	CGCG	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	3 cut(s)	295, 477, 617
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	3 cut(s)	83, 213, 447
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	3 cut(s)	269, 273, 682
BstDEI	CTNAG	4 cut(s)	117, 428, 474, 596
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	298, 480, 620
BstMAI	GTCTC	4 cut(s)	34, 158, 328, 339
BstMBI	GATC	3 cut(s)	295, 477, 617
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 496
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	2 cut(s)	234, 341
BstSCI	CCNGG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	206, 346, 363
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	269, 273, 682
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	2 cut(s)	51, 365
CviAII	CATG	5 cut(s)	231, 264, 338, 491, 689
DdeI	CTNAG	4 cut(s)	117, 428, 474, 596
DpnI	GATC	3 cut(s)	297, 479, 619
DpnII	GATC	3 cut(s)	295, 477, 617
Eam1104I	CTCTTC	3 cut(s)	83, 213, 447
EarI	CTCTTC	3 cut(s)	83, 213, 447
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	5 cut(s)	234, 267, 341, 494, 692
FatI	CATG	5 cut(s)	230, 263, 337, 490, 688
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	195, 360, 377
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	195, 360, 377
GluI	GCNGC	3 cut(s)	195, 360, 377
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	266
HgaI	GACGC	2 cut(s)	51, 365
Hin1II	CATG	5 cut(s)	234, 267, 341, 494, 692
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	47, 663
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	321, 577
Hpy188III	TCNNGA	3 cut(s)	484, 621, 667
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	6 cut(s)	194, 205, 379, 394, 652, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 496
HpyF3I	CTNAG	4 cut(s)	117, 428, 474, 596
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	234, 267, 341, 494, 692
Kzo9I	GATC	3 cut(s)	295, 477, 617
LmnI	GCTCC	2 cut(s)	288, 520
LpnPI	CCDG	9 cut(s)	21, 82, 230, 285, 355, 419, 491, 518, 680
Lsp1109I	GCAGC	3 cut(s)	206, 346, 363
LweI	GCATC	3 cut(s)	181, 192, 241
MaeII	ACGT	1 cut(s)	397
MalI	GATC	3 cut(s)	297, 479, 619
MboI	GATC	3 cut(s)	295, 477, 617
MboII	GAAGA	4 cut(s)	100, 230, 464, 574
MfeI	CAATTG	2 cut(s)	291, 533
MhlI	GDGCHC	2 cut(s)	244, 285
MluCI	AATT	3 cut(s)	80, 291, 533
MnlI	CCTC	8 cut(s)	84, 87, 120, 231, 241, 394, 448, 605
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	506
MunI	CAATTG	2 cut(s)	291, 533
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	376, 496
NdeII	GATC	3 cut(s)	295, 477, 617
NlaIII	CATG	5 cut(s)	234, 267, 341, 494, 692
NspI	RCATGY	2 cut(s)	234, 341
NspV	TTCGAA	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	47, 663
PkrI	GCNGC	3 cut(s)	196, 361, 378
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	3 cut(s)	195, 360, 377
Sau3AI	GATC	3 cut(s)	295, 477, 617
Sau96I	GGNCC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	244, 285
SetI	ASST	9 cut(s)	22, 31, 285, 372, 378, 400, 525, 558, 697
SfaNI	GCATC	3 cut(s)	181, 192, 241
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	15, 557
SmoI	CTYRAG	2 cut(s)	15, 557
Sse9I	AATT	3 cut(s)	80, 291, 533
SsiI	CCGC	1 cut(s)	130
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	633
TasI	AATT	3 cut(s)	80, 291, 533
TfiI	GAWTC	2 cut(s)	47, 663
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	3 cut(s)	194, 359, 376
TspDTI	ATGAA	3 cut(s)	507, 591, 624
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	2 cut(s)	234, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.