Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Forward (+)

21792010 .. 21792353

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCAATCTCCAAAGGATGACATGGTGGCATGTGTGATGGCATTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCTAGAGAGCTTCAAGCAATAGACCGTTCACCGCACCTGTCTCATCAGATTGATGTCGAGAGACATACCAGAGATTTTATGGAAGCTGCCAAAAAGCTACAGCTCTATTTTATTAGTCTGCAACGTGAAGAGCTGCCTACGAATGCTGAAAACTACGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

5.23

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	11 - 67	1.1e-11	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	5 cut(s)	82, 158, 169, 175, 205
AluI	AGCT	5 cut(s)	82, 158, 169, 175, 205
Alw26I	GTCTC	2 cut(s)	117, 127
ApeKI	GCWGC	3 cut(s)	50, 158, 205
AsuHPI	GGTGA	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	37, 145, 192
BccI	CCATC	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	117, 127
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	3 cut(s)	51, 159, 206
BlsI	GCNGC	3 cut(s)	52, 160, 207
BseGI	GGATG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	37, 145, 192
BsmAI	GTCTC	2 cut(s)	117, 127
BsmI	GAATGC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	68, 72
BstF5I	GGATG	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	117, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	37, 145, 192
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	68, 72
CviAII	CATG	3 cut(s)	22, 30, 63
CviJI	RGCY	6 cut(s)	50, 82, 158, 169, 175, 205
CviKI_1	RGCY	6 cut(s)	50, 82, 158, 169, 175, 205
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
FaeI	CATG	3 cut(s)	25, 33, 66
FaiI	YATR	5 cut(s)	23, 31, 64, 138, 152
FatI	CATG	3 cut(s)	21, 29, 62
Fnu4HI	GCNGC	3 cut(s)	51, 159, 206
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	51, 159, 206
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	3 cut(s)	51, 159, 206
Hin1II	CATG	3 cut(s)	25, 33, 66
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	4, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	25, 33, 66
LguI	GCTCTTC	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	84, 122, 154
Lsp1109I	GCAGC	3 cut(s)	37, 145, 192
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	196
MboII	GAAGA	1 cut(s)	212
MnlI	CCTC	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	47
NlaIII	CATG	3 cut(s)	25, 33, 66
NspI	RCATGY	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	195
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	52, 160, 207
SapI	GCTCTTC	1 cut(s)	195
SatI	GCNGC	3 cut(s)	51, 159, 206
SetI	ASST	8 cut(s)	84, 111, 160, 171, 177, 199, 207, 236
SfcI	CTRYAG	1 cut(s)	170
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	129
TseI	GCWGC	3 cut(s)	50, 158, 205
XceI	RCATGY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.