Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

11658629 .. 11660016

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGAGAGACAAGTGGTAGATCAACAGCACCAAAGTGATGCACAGATGCAATCTCAAGTGGCTCCGAGGGAAGACATGGTTTCGTGTGTAATGGCGCTGGAGGCGGCTTTGCTTCCATGCTTGCCTGCCAGAGAGCTTCAAGCGATTGACCGCTCTCCCCACCCGTCTCATCAGATTGATGTGGAGCGGCATGCCAGAGACTTTATGGAAGCTGCCAAAAAGCTTCAACTGTACTTTATCAGTCTGCAACGTGAGGATCAGCCAACAAAGGCTGAACAACTAAGAAAGGAGATTGATGCAATGGAAGAGGAGTTGAGGATAAAGACCGAGATCGATCAAGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.41

Weight (kDa)

4.85

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	156, 190
AciI	CCGC	3 cut(s)	107, 154, 190
AclWI	GGATC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	143, 230
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	139, 215, 226
AluI	AGCT	3 cut(s)	139, 215, 226
Alw26I	GTCTC	3 cut(s)	4, 174, 195
AlwI	GGATC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	4, 174, 195
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	3 cut(s)	108, 191, 216
BlsI	GCNGC	3 cut(s)	109, 192, 217
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	3 cut(s)	31, 39, 289
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	42
Bsa29I	ATCGAT	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	336
BsmAI	GTCTC	3 cut(s)	4, 174, 195
BsmBI	CGTCTC	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	22, 259, 333, 337
BspACI	CCGC	3 cut(s)	107, 154, 190
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	267
BsrBI	CCGCTC	2 cut(s)	156, 190
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	22, 259, 333, 337
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	125, 129, 195
BstDEI	CTNAG	2 cut(s)	6, 284
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	4 cut(s)	25, 262, 336, 340
BstMAI	GTCTC	3 cut(s)	4, 174, 195
BstMBI	GATC	4 cut(s)	22, 259, 333, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	125, 129, 195
CfoI	GCGC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	79, 120, 194, 348
CviJI	RGCY	8 cut(s)	5, 65, 110, 139, 215, 226, 265, 275
CviKI_1	RGCY	8 cut(s)	5, 65, 110, 139, 215, 226, 265, 275
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	6, 284
DpnI	GATC	4 cut(s)	24, 261, 335, 339
DpnII	GATC	4 cut(s)	22, 259, 333, 337
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	4 cut(s)	82, 123, 197, 351
FaiI	YATR	5 cut(s)	80, 121, 195, 209, 349
FatI	CATG	4 cut(s)	78, 119, 193, 347
Fnu4HI	GCNGC	3 cut(s)	108, 191, 216
Fsp4HI	GCNGC	3 cut(s)	108, 191, 216
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	108, 191, 216
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	101
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	82, 123, 197, 351
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	69, 177
Hpy188III	TCNNGA	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	44, 52, 250, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	6, 284
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	82, 123, 197, 351
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	4 cut(s)	22, 259, 333, 337
LmnI	GCTCC	2 cut(s)	70, 187
LpnPI	CCDG	4 cut(s)	86, 141, 145, 211
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	3 cut(s)	31, 39, 289
MaeII	ACGT	1 cut(s)	253
MalI	GATC	4 cut(s)	24, 261, 335, 339
MbiI	CCGCTC	2 cut(s)	156, 190
MboI	GATC	4 cut(s)	22, 259, 333, 337
MboII	GAAGA	2 cut(s)	86, 320
MnlI	CCTC	5 cut(s)	63, 97, 250, 304, 312
MslI	CAYNNNNRTG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	4 cut(s)	22, 259, 333, 337
NlaIII	CATG	4 cut(s)	82, 123, 197, 351
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	109, 192, 217
PspN4I	GGNNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	3 cut(s)	108, 191, 216
Sau3AI	GATC	4 cut(s)	22, 259, 333, 337
SetI	ASST	4 cut(s)	141, 217, 228, 256
SfaNI	GCATC	3 cut(s)	31, 39, 289
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SphI	GCATGC	1 cut(s)	197
SsiI	CCGC	3 cut(s)	107, 154, 190
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	336
TaqII	GACCGA	1 cut(s)	344
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	2 cut(s)	110, 193
TseI	GCWGC	1 cut(s)	215
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.