Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007781

Physical Location & Seq

Genomic Coordinates Forward (+)

20297753 .. 20300462

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATTCTCCCTTCCAATAAAAACAACAACCCAATCACGATTTTGATTCCCACCCAACTTTTCACAGCATCTTTGCTATTACCATTAATCTTGACCCTATCTATTTCTCTATCTCTCTTCCCCATCTTCTCCATTGAAGCCAAAGCCATGAAGGTCCATCCCATCCCCAAGAGACGCAACATCTCCATCCAATACCATTCGAGAAACCCACTTTCCGAAGCTCAGGCCCTTCTTGGTCTCACTCACAACCACAAGAAGCTCCGCCGTCTCCCCCACGTCTTCAGCCGCGTCCTCGAGCTCCCCTTCCGCTCCGACGCCGACGTCATCATCGAGGAGAATCCTGACTGCTTCCGCTTCGTCGCCGAAACGGAGAGTGTCTTCGGTGACGATGTGAGGGCCCACACGGTGGAGATTCACCCCGGTGTGACGAAGATTGTGGTCAGGGAGAGTGGGGATGCGGCGGAGCTGACGTTGGATGAGCTGGAGCTTGATATGTGGAGGTTCCGGCTGCCGGAGTCGACTCGGCCGGAGCTGGCGAGAGCGGTTTTTGTGGATGGGGAGCTGATTGTGACGGTGCCGAAGATCGAAGGGGTGGAGAATGAAGGGGGAGAGGGTTTCAGAGGAGTAAATGCACAACTGGTTAGGCCCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

6.18

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22530 AT4G14830
fragaria_vesca	FvH4_4g16300 FvH4_4g16300
malus_domestica	MD13G1194500.v1.1 MD16G1195400.v1.1
prunus_persica	Prupe.1G015400_v2.0.a1
pyrus_communis	pycom05g06220 pycom13g16690 pycom16g16460
rosa_chinensis	RchiOBHm_Chr4g0415991
rosa_laevigata	RLG00000008025
rosa_multiflora	Rmu_sc0005415.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359840
rosa_rugosa	Rorug02G0491700 Rorug03G0025900 Rorug04G0137200 Rorug06G0075100
rosa_samantha	Rh4AG199700 Rh4BG197200 Rh4CG210700 Rh5BG016200 Rh6BG368700
rosa_wichuraiana	Rw4G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	574
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccBSI	CCGCTC	2 cut(s)	309, 542
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	288
AciI	CCGC	7 cut(s)	262, 286, 307, 352, 458, 461, 542
AcoI	YGGCCR	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	265
AcyI	GRCGYC	2 cut(s)	315, 321
AdeI	CACNNNGTG	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	406, 511
AgsI	TTSAA	1 cut(s)	137
AjiI	CACGTC	1 cut(s)	277
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	8 cut(s)	221, 259, 298, 466, 481, 487, 532, 562
AluI	AGCT	8 cut(s)	221, 259, 298, 466, 481, 487, 532, 562
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	3 cut(s)	166, 242, 272
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	4 cut(s)	225, 396, 524, 644
ApaI	GGGCCC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	508
AseI	ATTAAT	1 cut(s)	86
AspS9I	GGNCC	5 cut(s)	154, 226, 396, 397, 645
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	2 cut(s)	395, 407
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	300, 400
BbsI	GAAGAC	2 cut(s)	271, 370
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	495
BccI	CCATC	5 cut(s)	131, 165, 170, 194, 548
BceAI	ACGGC	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	166, 242, 272
BisI	GCNGC	3 cut(s)	286, 459, 509
BlsI	GCNGC	3 cut(s)	287, 460, 510
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	5 cut(s)	154, 226, 396, 397, 645
BmiI	GGNNCC	4 cut(s)	398, 503, 576, 647
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	77, 445
BpiI	GAAGAC	2 cut(s)	271, 370
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	420
BsaHI	GRCGYC	2 cut(s)	315, 321
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 511
Bse1I	ACTGG	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	6 cut(s)	157, 162, 186, 460, 481, 559
BseLI	CCNNNNNNNGG	2 cut(s)	406, 511
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	2 cut(s)	347, 636
BseSI	GKGCMC	1 cut(s)	400
BseX3I	CGGCCG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	4 cut(s)	227, 398, 526, 646
BshNI	GGYRCC	1 cut(s)	574
BsiEI	CGRYCG	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	4 cut(s)	420, 505, 512, 527
BslI	CCNNNNNNNGG	2 cut(s)	406, 511
BsmAI	GTCTC	3 cut(s)	166, 242, 272
BsmBI	CGTCTC	2 cut(s)	166, 272
BsnI	GGCC	4 cut(s)	227, 398, 526, 646
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	300, 400
Bsp143I	GATC	1 cut(s)	582
BspACI	CCGC	7 cut(s)	262, 286, 307, 352, 458, 461, 542
BspANI	GGCC	4 cut(s)	227, 398, 526, 646
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	398, 503, 576, 647
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	242
BsrBI	CCGCTC	2 cut(s)	309, 542
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	582
BssNI	GRCGYC	2 cut(s)	315, 321
Bst4CI	ACNGT	2 cut(s)	406, 574
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	2 cut(s)	315, 321
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	6 cut(s)	157, 162, 186, 460, 481, 559
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	585
BstMAI	GTCTC	3 cut(s)	166, 242, 272
BstMBI	GATC	1 cut(s)	582
BstMCI	CGRYCG	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	2 cut(s)	271, 370
BstZI	CGGCCG	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	227, 398, 526, 646
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	6 cut(s)	157, 162, 186, 460, 481, 559
Cac8I	GCNNGC	1 cut(s)	534
Cfr13I	GGNCC	5 cut(s)	154, 226, 396, 397, 645
CseI	GACGC	3 cut(s)	183, 277, 323
CviAII	CATG	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
DraIII	CACNNNGTG	1 cut(s)	406
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	524
EagI	CGGCCG	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	251, 476
Ecl136II	GAGCTC	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	524
Eco24I	GRGCYC	2 cut(s)	300, 400
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	154
Eco52I	CGGCCG	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	3 cut(s)	226, 396, 645
EcoT38I	GRGCYC	2 cut(s)	300, 400
Esp3I	CGTCTC	2 cut(s)	166, 272
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	149, 494
FatI	CATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	286, 459, 509
FokI	GGATG	6 cut(s)	144, 149, 173, 467, 488, 566
FriOI	GRGCYC	2 cut(s)	300, 400
Fsp4HI	GCNGC	3 cut(s)	286, 459, 509
GluI	GCNGC	3 cut(s)	286, 459, 509
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	227, 398, 526, 646
HapII	CCGG	4 cut(s)	420, 505, 512, 527
HgaI	GACGC	3 cut(s)	183, 277, 323
Hin1I	GRCGYC	2 cut(s)	315, 321
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	6 cut(s)	4, 46, 337, 412, 515, 520
HpaII	CCGG	4 cut(s)	420, 505, 512, 527
HphI	GGTGA	2 cut(s)	395, 407
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	3 cut(s)	217, 313, 620
Hpy188III	TCNNGA	4 cut(s)	37, 91, 201, 341
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	3 cut(s)	317, 323, 362
HpyAV	CCTTC	6 cut(s)	21, 145, 239, 313, 581, 596
HpyCH4III	ACNGT	2 cut(s)	406, 574
HpyCH4IV	ACGT	3 cut(s)	276, 321, 470
HpyCH4V	TGCA	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	3 cut(s)	276, 321, 470
Hsp92I	GRCGYC	2 cut(s)	315, 321
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	582
LmnI	GCTCC	7 cut(s)	264, 303, 314, 463, 484, 529, 559
Lsp1109I	GCAGC	1 cut(s)	495
LweI	GCATC	2 cut(s)	77, 445
MaeII	ACGT	3 cut(s)	276, 321, 470
MaeIII	GTNAC	3 cut(s)	383, 424, 568
MalI	GATC	1 cut(s)	584
MbiI	CCGCTC	2 cut(s)	309, 542
MboI	GATC	1 cut(s)	582
MboII	GAAGA	6 cut(s)	109, 118, 271, 370, 442, 592
MhlI	GDGCHC	2 cut(s)	300, 400
MlyI	GAGTC	2 cut(s)	514, 524
MmeI	TCCRAC	2 cut(s)	336, 453
MnlI	CCTC	6 cut(s)	302, 325, 387, 492, 604, 614
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	4 cut(s)	420, 505, 512, 527
MspR9I	CCNGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	288
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	582
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	4 cut(s)	398, 503, 576, 647
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	3 cut(s)	383, 424, 568
OliI	CACNNNNGTG	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	4, 46, 337, 412
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	287, 460, 510
PleI	GAGTC	2 cut(s)	514, 523
PpsI	GAGTC	2 cut(s)	514, 523
PshBI	ATTAAT	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	398, 503, 576, 647
PspOMI	GGGCCC	1 cut(s)	396
PspPI	GGNCC	5 cut(s)	154, 226, 396, 397, 645
PspXI	VCTCGAGB	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	286, 459, 509
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	5 cut(s)	154, 226, 396, 397, 645
SchI	GAGTC	2 cut(s)	514, 524
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	300, 400
SfaNI	GCATC	2 cut(s)	77, 445
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	7 cut(s)	262, 286, 307, 352, 458, 461, 542
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	406, 574
TaiI	ACGT	3 cut(s)	279, 324, 473
TaqI	TCGA	5 cut(s)	200, 294, 330, 518, 585
TauI	GCSGC	2 cut(s)	288, 461
TfiI	GAWTC	4 cut(s)	4, 46, 337, 412
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	3 cut(s)	383, 424, 568
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	3 cut(s)	383, 424, 568
TspDTI	ATGAA	2 cut(s)	164, 615
TspGWI	ACGGA	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	518
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.