Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007781

Physical Location & Seq

Genomic Coordinates Forward (+)

2025668 .. 2027475

Gene Structure 1808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0025900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCTACCCTTTGTCCTTTACACAAAAATAATTATATTATAGCTGTTATCACCCTTTTTCTCTTTCATCTCGTATGTTACTCTGTTACAGCAACCGCCAATATCAACAACAATAATGGTGGCTTTAGCGCCCGTCTTATCAGAAGGAACTCCAAGAATTCACCATTGTATAAATACAAAAACAATAAAGTTTTTCGACGGTTGATGGGTCCAGACACGGCTGGAGCACCAATGACAACTGATCCGGATAGTGGCCAACATATTATGAAGTTCTCAATGGGAACCCCGCCATTTGATATTTATGCCATTGCTGATACAGGCAGCGATCTACTATGGACGCAATGCCAACCGTGTAAAGTTTGCTATAAGACCAAATTTGACATTTTTGACCCGAGAAAATCCTCGACTTATAGGAACATTTCATGTTGGGCAAGCGACTGTAGACTCATCCAGAATCCATCGGTCTATCCACCAAACTTTTGTAGAGAAAATGCTGAAGAAACTTGCGTGTACCATGCCGCGTATGCAAGCGGGCATAACTCGACAGGTCCATTCGCTAAAGAAACAGTTACCTTCACATCCACTGCAGATAAAGTTGTAACCGTAGAGGATTATTTATTTGGGTGTGGGAATGAGAACAATTTCCATGGAAATAATTTGGGAGTTATTGGGCTTGGACGTGGTCCCTTGTCATTAGTTTCTCAAATGGCTCCCTATGTTGGAGGGAAAAAATTTTCTCATTGCTTCGTGGCAGATCCCAATATTGAAAGCAAGATCTATTTCGGGAACGGGAGTGAAGTTTTGGGTGAAGGGGTACTGACAGAAACTATGGCAGAACCAAACGGGGGTTATACTTTGACAATATCAGGAATTACCATTGAAAATGACTTTGTTCCTTTTAACTCAACTGGGACATTGCGCAAGAAAGCTAACATGCTGGTTGACTCAGGTACACCTCTGTCACGTTTACCACAAGACTTTTTTGACCGAGTGATAACTCAGCTAAACAACACAGTTAAATTAGAGTCATTCATGCAAAAAGGAGGTGAATTAAGTAACATTTGCTTCAATTACACGACGCTTCCAAAATTACCAACAGTGGCTTTAGAATTTGAGAGTGGTGGAAAACTGCAGTTGAATGAGAACCAATTATTTCATATAGACGAAAACCGCAAGGTGTTTTGCTTTATGATGATGAACAGCACTTCTGATTTTATGATTTTTGGAGGTACTCTTCAGACAGATTTCTTGATTGGTTTTGACCTAGATAGAAAAGTGGTATCTTTCAAGCCCACTAATTGCGCAGACTTCAATAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

440

Amino Acids

48.85

Weight (kDa)

6.7

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	88 - 263	2.5e-46	Xylanase inhibitor N-terminal
Asp	PF00026	172 - 429	1.5e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	284 - 430	3.6e-20	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22530 AT4G14830
fragaria_vesca	FvH4_4g16300 FvH4_4g16300
malus_domestica	MD13G1194500.v1.1 MD16G1195400.v1.1
prunus_persica	Prupe.1G015400_v2.0.a1
pyrus_communis	pycom05g06220 pycom13g16690 pycom16g16460
rosa_chinensis	RchiOBHm_Chr4g0415991
rosa_laevigata	RLG00000008025
rosa_multiflora	Rmu_sc0005415.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359840
rosa_rugosa	Rorug02G0491700 Rorug03G0025900 Rorug04G0137200 Rorug06G0075100
rosa_samantha	Rh4AG199700 Rh4BG197200 Rh4CG210700 Rh5BG016200 Rh6BG368700
rosa_wichuraiana	Rw4G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	920, 1303
AccI	GTMKAC	1 cut(s)	442
AccII	CGCG	1 cut(s)	521
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	5 cut(s)	96, 287, 519, 531, 1171
AclWI	GGATC	2 cut(s)	236, 749
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	4 cut(s)	157, 374, 731, 1109
AcuI	CTGAAG	2 cut(s)	516, 1220
AfaI	GTAC	4 cut(s)	512, 816, 952, 1231
AfiI	CCNNNNNNNGG	3 cut(s)	251, 719, 845
AgsI	TTSAA	6 cut(s)	767, 881, 1069, 1138, 1288, 1312
AjiI	CACGTC	1 cut(s)	680
AluBI	AGCT	3 cut(s)	44, 929, 1003
AluI	AGCT	3 cut(s)	44, 929, 1003
Alw21I	GWGCWC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	236, 749
Ama87I	CYCGRG	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	4 cut(s)	157, 374, 731, 1109
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	3 cut(s)	131, 921, 1304
AspS9I	GGNCC	3 cut(s)	209, 548, 683
AsuHPI	GGTGA	4 cut(s)	43, 153, 818, 1058
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	3 cut(s)	209, 548, 683
BalI	TGGCCA	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	333
BccI	CCATC	2 cut(s)	199, 466
BceAI	ACGGC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	1265
BfmI	CTRYAG	3 cut(s)	439, 585, 1130
BfoI	RGCGCY	1 cut(s)	132
BglII	AGATCT	1 cut(s)	774
BisI	GCNGC	2 cut(s)	322, 519
BlsI	GCNGC	2 cut(s)	323, 520
Bme18I	GGWCC	3 cut(s)	209, 548, 683
BmeT110I	CYCGRG	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	680
BmgT120I	GGNCC	3 cut(s)	209, 548, 683
BmiI	GGNNCC	4 cut(s)	210, 283, 685, 711
BmrI	ACTGGG	1 cut(s)	918
BmuI	ACTGGG	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	646
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 719, 845
Bse1I	ACTGG	1 cut(s)	913
Bse3DI	GCAATG	4 cut(s)	306, 347, 739, 914
BseAI	TCCGGA	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	2 cut(s)	447, 578
BseLI	CCNNNNNNNGG	3 cut(s)	251, 719, 845
BseMI	GCAATG	4 cut(s)	306, 347, 739, 914
BseMII	CTCAG	2 cut(s)	960, 1013
BseNI	ACTGG	1 cut(s)	913
BseXI	GCAGC	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	669, 925
BslI	CCNNNNNNNGG	3 cut(s)	251, 719, 845
BsmFI	GGGAC	2 cut(s)	669, 925
BsnI	GGCC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	241, 325, 754, 774
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	5 cut(s)	96, 287, 519, 531, 1171
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	959, 1012
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	4 cut(s)	210, 283, 685, 711
BspMAI	CTGCAG	2 cut(s)	589, 1134
BspPI	GGATC	2 cut(s)	236, 749
BsrDI	GCAATG	4 cut(s)	306, 347, 739, 914
BsrI	ACTGG	1 cut(s)	913
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	4 cut(s)	241, 325, 754, 774
BssT1I	CCWWGG	1 cut(s)	646
Bst4CI	ACNGT	7 cut(s)	201, 351, 440, 568, 604, 1015, 1099
Bst6I	CTCTTC	1 cut(s)	1239
BstC8I	GCNNGC	3 cut(s)	433, 529, 533
BstDEI	CTNAG	2 cut(s)	946, 999
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	2 cut(s)	447, 578
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	3 cut(s)	131, 921, 1304
BstKTI	GATC	4 cut(s)	244, 328, 757, 777
BstMBI	GATC	4 cut(s)	241, 325, 754, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	937
BstSFI	CTRYAG	3 cut(s)	439, 585, 1130
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	754, 774
BstYI	RGATCY	2 cut(s)	754, 774
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	646
BtrI	CACGTC	1 cut(s)	680
BtsCI	GGATG	2 cut(s)	447, 578
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	582, 1104
Cac8I	GCNNGC	3 cut(s)	433, 529, 533
CfoI	GCGC	3 cut(s)	131, 921, 1304
Cfr13I	GGNCC	3 cut(s)	209, 548, 683
CseI	GACGC	2 cut(s)	346, 1087
Csp6I	GTAC	4 cut(s)	511, 815, 951, 1230
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	5 cut(s)	423, 515, 647, 934, 1033
CviQI	GTAC	4 cut(s)	511, 815, 951, 1230
DdeI	CTNAG	2 cut(s)	946, 999
DpnI	GATC	4 cut(s)	243, 327, 756, 776
DpnII	GATC	4 cut(s)	241, 325, 754, 774
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	1239
EarI	CTCTTC	1 cut(s)	1239
Eco130I	CCWWGG	1 cut(s)	646
Eco47I	GGWCC	3 cut(s)	209, 548, 683
Eco57I	CTGAAG	2 cut(s)	516, 1220
Eco88I	CYCGRG	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	5 cut(s)	426, 518, 650, 937, 1036
FaqI	GGGAC	2 cut(s)	669, 925
FatI	CATG	5 cut(s)	422, 514, 646, 933, 1032
FauI	CCCGC	2 cut(s)	294, 524
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	322, 519
FokI	GGATG	2 cut(s)	434, 565
Fsp4HI	GCNGC	2 cut(s)	322, 519
FspBI	CTAG	1 cut(s)	1265
FspI	TGCGCA	2 cut(s)	920, 1303
GlaI	GCGC	3 cut(s)	130, 920, 1303
GluI	GCNGC	2 cut(s)	322, 519
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	2 cut(s)	346, 1087
HhaI	GCGC	3 cut(s)	131, 921, 1304
Hin1II	CATG	5 cut(s)	426, 518, 650, 937, 1036
Hin6I	GCGC	3 cut(s)	129, 919, 1302
HinP1I	GCGC	3 cut(s)	129, 919, 1302
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HinfI	GANTC	4 cut(s)	444, 454, 944, 1025
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	4 cut(s)	43, 153, 818, 1058
Hpy166II	GTNNAC	5 cut(s)	443, 511, 943, 953, 968
Hpy188I	TCNGA	3 cut(s)	143, 1210, 1239
Hpy188III	TCNNGA	6 cut(s)	212, 245, 451, 784, 867, 1249
Hpy8I	GTNNAC	5 cut(s)	443, 511, 943, 953, 968
Hpy99I	CGWCG	2 cut(s)	201, 1081
HpyAV	CCTTC	3 cut(s)	138, 583, 803
HpyCH4III	ACNGT	7 cut(s)	201, 351, 440, 568, 604, 1015, 1099
HpyCH4IV	ACGT	2 cut(s)	679, 964
HpyCH4V	TGCA	4 cut(s)	527, 587, 1036, 1132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	2 cut(s)	946, 999
HpySE526I	ACGT	2 cut(s)	679, 964
Hsp92II	CATG	5 cut(s)	426, 518, 650, 937, 1036
HspAI	GCGC	3 cut(s)	129, 919, 1302
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	241, 325, 754, 774
LmnI	GCTCC	2 cut(s)	224, 715
Lsp1109I	GCAGC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	1265
MaeII	ACGT	2 cut(s)	679, 964
MaeIII	GTNAC	6 cut(s)	77, 85, 568, 598, 960, 1055
MalI	GATC	4 cut(s)	243, 327, 756, 776
MboI	GATC	4 cut(s)	241, 325, 754, 774
MboII	GAAGA	2 cut(s)	509, 1226
MflI	RGATCY	2 cut(s)	754, 774
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	3 cut(s)	438, 938, 1034
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	6 cut(s)	412, 601, 716, 966, 1037, 1220
Mox20I	TGGCCA	1 cut(s)	255
MroI	TCCGGA	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	3 cut(s)	900, 1017, 1052
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	524
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	4 cut(s)	241, 325, 754, 774
NlaIII	CATG	5 cut(s)	426, 518, 650, 937, 1036
NlaIV	GGNNCC	4 cut(s)	210, 283, 685, 711
NmuCI	GTSAC	1 cut(s)	960
NsbI	TGCGCA	2 cut(s)	920, 1303
NspI	RCATGY	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	681
PkrI	GCNGC	2 cut(s)	323, 520
PleI	GAGTC	3 cut(s)	438, 938, 1033
PpsI	GAGTC	3 cut(s)	438, 938, 1033
PspN4I	GGNNCC	4 cut(s)	210, 283, 685, 711
PspPI	GGNCC	3 cut(s)	209, 548, 683
PstI	CTGCAG	2 cut(s)	589, 1134
PsuI	RGATCY	2 cut(s)	754, 774
PsyI	GACNNNGTC	1 cut(s)	681
RsaI	GTAC	4 cut(s)	512, 816, 952, 1231
RsaNI	GTAC	4 cut(s)	511, 815, 951, 1230
SaqAI	TTAA	3 cut(s)	900, 1017, 1052
SatI	GCNGC	2 cut(s)	322, 519
Sau3AI	GATC	4 cut(s)	241, 325, 754, 774
Sau96I	GGNCC	3 cut(s)	209, 548, 683
SchI	GAGTC	3 cut(s)	438, 938, 1034
SduI	GDGCHC	1 cut(s)	229
SfcI	CTRYAG	3 cut(s)	439, 585, 1130
SinI	GGWCC	3 cut(s)	209, 548, 683
SsiI	CCGC	5 cut(s)	96, 287, 519, 531, 1171
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	1 cut(s)	1265
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	7 cut(s)	201, 351, 440, 568, 604, 1015, 1099
TaiI	ACGT	2 cut(s)	682, 967
TaqI	TCGA	3 cut(s)	196, 404, 542
TaqII	GACCGA	2 cut(s)	451, 1002
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	900, 1017, 1052
Tru9I	TTAA	3 cut(s)	900, 1017, 1052
TscAI	CASTG	2 cut(s)	589, 1104
TseFI	GTSAC	1 cut(s)	960
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	960
TspDTI	ATGAA	6 cut(s)	56, 281, 411, 1021, 1145, 1211
TspRI	CASTG	2 cut(s)	589, 1104
Tth111I	GACNNNGTC	1 cut(s)	681
VpaK11BI	GGWCC	3 cut(s)	209, 548, 683
XapI	RAATTY	4 cut(s)	157, 374, 731, 1109
XceI	RCATGY	1 cut(s)	937
XmiI	GTMKAC	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	1 cut(s)	1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.