Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007781

Physical Location & Seq

Genomic Coordinates Reverse (-)

12447312 .. 12448048

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATTCCTTCTTTTGGTAAAAACAACCCAATCAGGATTTTGATTCCCACCCAAGATTGGTCTCCACTACTTCCGCCACCGCCTCCCCAGCAGCTGCCACTGAAGCCGCCAACCATGAAGGTCCACCCCATGCCCAGGAAGCGCAACATCACCGTCCAATACAGATCAAGAAACCCACTTTCTGAAGCGCAGCCGGATCTGCACGTTACACTGGAGCTCCCCTTTCGGTCCGACGCTGACGTTCTGGTCCAGGAGAATCCCGATTGCTTCCGATTCGTCGCCGAAGCCGATAATATCGGCGACGGCGTGAGGACCCACACCATCGAAATCCATCCCGGGGTGACCAAAATCGTGGTTCGCGAAAGTGGATCGGCGGAATTGACGTTGGACGAGCTCGAGCTCGACATGTGGAGGTTTCGGCTGCCGGAATCGACTCGACCCGAGTTGGCCAGCGCGGTTTTCGTGGACGGGGAGCTTATCGTGACGGTGCCGAAGGATGTGGGAGTGGAGAATGCGGACGGTGGTGATGGTGGCGGAGAGGTTTGGGGCGGTGGCGACGGGAATGGGGGTGGGGGTTTCAGAGGAGGTATGGGGAACCGCCTTGTGCTTGTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.35

Weight (kDa)

5.01

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22530 AT4G14830
fragaria_vesca	FvH4_4g16300 FvH4_4g16300
malus_domestica	MD13G1194500.v1.1 MD16G1195400.v1.1
prunus_persica	Prupe.1G015400_v2.0.a1
pyrus_communis	pycom05g06220 pycom13g16690 pycom16g16460
rosa_chinensis	RchiOBHm_Chr4g0415991
rosa_laevigata	RLG00000008025
rosa_multiflora	Rmu_sc0005415.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359840
rosa_rugosa	Rorug02G0491700 Rorug03G0025900 Rorug04G0137200 Rorug06G0075100
rosa_samantha	Rh4AG199700 Rh4BG197200 Rh4CG210700 Rh5BG016200 Rh6BG368700
rosa_wichuraiana	Rw4G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	487
AccII	CGCG	2 cut(s)	360, 455
AciI	CCGC	9 cut(s)	74, 80, 107, 374, 455, 515, 534, 549, 598
AclWI	GGATC	2 cut(s)	204, 376
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	2 cut(s)	122, 204
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	4 cut(s)	14, 57, 135, 337
AflIII	ACRYGT	1 cut(s)	405
AjnI	CCWGG	2 cut(s)	134, 249
AluBI	AGCT	5 cut(s)	94, 217, 394, 400, 475
AluI	AGCT	5 cut(s)	94, 217, 394, 400, 475
Alw21I	GWGCWC	3 cut(s)	219, 396, 402
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	204, 376
AlwNI	CAGNNNCTG	1 cut(s)	94
Ama87I	CYCGRG	3 cut(s)	335, 395, 440
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	4 cut(s)	91, 94, 190, 421
AspLEI	GCGC	3 cut(s)	144, 190, 455
AspS9I	GGNCC	4 cut(s)	121, 228, 247, 312
AsuC2I	CCSGG	2 cut(s)	336, 337
AsuHPI	GGTGA	3 cut(s)	142, 352, 536
AvaI	CYCGRG	3 cut(s)	335, 395, 440
AvaII	GGWCC	4 cut(s)	121, 228, 247, 312
BalI	TGGCCA	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	3 cut(s)	219, 396, 402
Bbv12I	GWGCWC	3 cut(s)	219, 396, 402
BbvI	GCAGC	4 cut(s)	81, 103, 202, 408
BccI	CCATC	3 cut(s)	329, 339, 521
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	136, 251
BcnI	CCSGG	2 cut(s)	336, 337
BcoDI	GTCTC	1 cut(s)	66
BisI	GCNGC	5 cut(s)	92, 95, 107, 191, 422
BlsI	GCNGC	5 cut(s)	93, 96, 108, 192, 423
Bme1390I	CCNGG	4 cut(s)	136, 251, 336, 337
Bme18I	GGWCC	4 cut(s)	121, 228, 247, 312
BmeT110I	CYCGRG	3 cut(s)	335, 395, 440
BmgT120I	GGNCC	4 cut(s)	121, 228, 247, 312
BmiI	GGNNCC	3 cut(s)	314, 489, 596
BmrFI	CCNGG	4 cut(s)	136, 251, 336, 337
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	336, 337
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	134, 335, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 57, 135, 337
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	136, 251
BseDI	CCNNGG	3 cut(s)	134, 335, 336
BseGI	GGATG	2 cut(s)	331, 502
BseLI	CCNNNNNNNGG	4 cut(s)	14, 57, 135, 337
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	4 cut(s)	81, 103, 202, 408
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	185
Bsh1236I	CGCG	2 cut(s)	360, 455
BshFI	GGCC	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	3 cut(s)	219, 396, 402
BsiHKCI	CYCGRG	3 cut(s)	335, 395, 440
BsiSI	CCGG	3 cut(s)	194, 336, 425
BslI	CCNNNNNNNGG	4 cut(s)	14, 57, 135, 337
BsmAI	GTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	3 cut(s)	335, 395, 440
Bsp1286I	GDGCHC	3 cut(s)	219, 396, 402
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	164, 196, 368
Bsp68I	TCGCGA	1 cut(s)	360
BspACI	CCGC	9 cut(s)	74, 80, 107, 374, 455, 515, 534, 549, 598
BspANI	GGCC	1 cut(s)	449
BspFNI	CGCG	2 cut(s)	360, 455
BspLI	GGNNCC	3 cut(s)	314, 489, 596
BspPI	GGATC	2 cut(s)	204, 376
BspT107I	GGYRCC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	134, 335, 336
BssMI	GATC	3 cut(s)	164, 196, 368
Bst2UI	CCWGG	2 cut(s)	136, 251
Bst4CI	ACNGT	4 cut(s)	154, 487, 521, 615
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	451
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	331, 502
BstFNI	CGCG	2 cut(s)	360, 455
BstHHI	GCGC	3 cut(s)	144, 190, 455
BstKTI	GATC	3 cut(s)	167, 199, 371
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	164, 196, 368
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 103, 139, 199
BstNI	CCWGG	2 cut(s)	136, 251
BstNSI	RCATGY	1 cut(s)	409
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	4 cut(s)	134, 249, 334, 335
BstUI	CGCG	2 cut(s)	360, 455
BstV1I	GCAGC	4 cut(s)	81, 103, 202, 408
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	449
BtsCI	GGATG	2 cut(s)	331, 502
BtsIMutI	CAGTG	2 cut(s)	98, 209
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	3 cut(s)	144, 190, 455
Cfr13I	GGNCC	4 cut(s)	121, 228, 247, 312
Cfr9I	CCCGGG	1 cut(s)	335
CpoI	CGGWCCG	1 cut(s)	228
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	611
CspI	CGGWCCG	1 cut(s)	228
CviAII	CATG	3 cut(s)	115, 130, 406
CviQI	GTAC	1 cut(s)	611
DpnI	GATC	3 cut(s)	166, 198, 370
DpnII	GATC	3 cut(s)	164, 196, 368
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	447
EciI	GGCGGA	3 cut(s)	63, 389, 549
Ecl136II	GAGCTC	3 cut(s)	217, 394, 400
Eco24I	GRGCYC	3 cut(s)	219, 396, 402
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	4 cut(s)	121, 228, 247, 312
Eco53kI	GAGCTC	3 cut(s)	217, 394, 400
Eco57I	CTGAAG	2 cut(s)	122, 204
Eco88I	CYCGRG	3 cut(s)	335, 395, 440
Eco91I	GGTNACC	1 cut(s)	340
EcoICRI	GAGCTC	3 cut(s)	217, 394, 400
EcoO109I	RGGNCCY	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	134, 249
EcoT38I	GRGCYC	3 cut(s)	219, 396, 402
FaeI	CATG	3 cut(s)	118, 133, 409
FaiI	YATR	4 cut(s)	116, 131, 407, 590
FatI	CATG	3 cut(s)	114, 129, 405
Fnu4HI	GCNGC	5 cut(s)	92, 95, 107, 191, 422
FokI	GGATG	2 cut(s)	318, 509
FriOI	GRGCYC	3 cut(s)	219, 396, 402
Fsp4HI	GCNGC	5 cut(s)	92, 95, 107, 191, 422
GlaI	GCGC	3 cut(s)	143, 189, 454
GluI	GCNGC	5 cut(s)	92, 95, 107, 191, 422
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	3 cut(s)	194, 336, 425
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	3 cut(s)	144, 190, 455
Hin1II	CATG	3 cut(s)	118, 133, 409
Hin6I	GCGC	3 cut(s)	142, 188, 453
HinP1I	GCGC	3 cut(s)	142, 188, 453
HinfI	GANTC	6 cut(s)	4, 43, 256, 273, 428, 433
HpaII	CCGG	3 cut(s)	194, 336, 425
HphI	GGTGA	3 cut(s)	142, 352, 536
Hpy166II	GTNNAC	2 cut(s)	124, 466
Hpy188I	TCNGA	4 cut(s)	184, 232, 272, 581
Hpy188III	TCNNGA	5 cut(s)	34, 168, 260, 359, 481
Hpy8I	GTNNAC	2 cut(s)	124, 466
Hpy99I	CGWCG	4 cut(s)	236, 281, 305, 560
HpyAV	CCTTC	3 cut(s)	18, 112, 487
HpyCH4III	ACNGT	4 cut(s)	154, 487, 521, 615
HpyCH4IV	ACGT	3 cut(s)	204, 240, 383
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 103, 139, 199
HpySE526I	ACGT	3 cut(s)	204, 240, 383
Hsp92II	CATG	3 cut(s)	118, 133, 409
HspAI	GCGC	3 cut(s)	142, 188, 453
Kzo9I	GATC	3 cut(s)	164, 196, 368
LmnI	GCTCC	3 cut(s)	214, 222, 472
Lsp1109I	GCAGC	4 cut(s)	81, 103, 202, 408
MaeII	ACGT	3 cut(s)	204, 240, 383
MaeIII	GTNAC	3 cut(s)	205, 340, 481
MalI	GATC	3 cut(s)	166, 198, 370
MboI	GATC	3 cut(s)	164, 196, 368
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	3 cut(s)	219, 396, 402
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	1 cut(s)	377
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	255, 366
MnlI	CCTC	6 cut(s)	93, 303, 405, 532, 575, 578
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	3 cut(s)	194, 336, 425
MspR9I	CCNGG	4 cut(s)	136, 251, 336, 337
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	136, 251
MvnI	CGCG	2 cut(s)	360, 455
MwoI	GCNNNNNNNGC	4 cut(s)	88, 103, 139, 199
NciI	CCSGG	2 cut(s)	336, 337
NdeII	GATC	3 cut(s)	164, 196, 368
NlaIII	CATG	3 cut(s)	118, 133, 409
NlaIV	GGNNCC	3 cut(s)	314, 489, 596
NmuCI	GTSAC	2 cut(s)	340, 481
NruI	TCGCGA	1 cut(s)	360
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	395
PciI	ACATGT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 303, 357
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	4, 43, 256, 273, 428
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	5 cut(s)	93, 96, 108, 192, 423
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	312
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	3 cut(s)	219, 396, 402
Psp5II	RGGWCCY	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	134, 249
PspEI	GGTNACC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	134, 249
PspN4I	GGNNCC	3 cut(s)	314, 489, 596
PspPI	GGNCC	4 cut(s)	121, 228, 247, 312
PspPPI	RGGWCCY	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	94
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
Rsr2I	CGGWCCG	1 cut(s)	228
RsrII	CGGWCCG	1 cut(s)	228
SacI	GAGCTC	3 cut(s)	219, 396, 402
SatI	GCNGC	5 cut(s)	92, 95, 107, 191, 422
Sau3AI	GATC	3 cut(s)	164, 196, 368
Sau96I	GGNCC	4 cut(s)	121, 228, 247, 312
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	4 cut(s)	136, 251, 336, 337
SduI	GDGCHC	3 cut(s)	219, 396, 402
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	4 cut(s)	121, 228, 247, 312
SlaI	CTCGAG	1 cut(s)	395
SmaI	CCCGGG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	9 cut(s)	74, 80, 107, 374, 455, 515, 534, 549, 598
SstI	GAGCTC	3 cut(s)	219, 396, 402
StyD4I	CCNGG	4 cut(s)	134, 249, 334, 335
TaaI	ACNGT	4 cut(s)	154, 487, 521, 615
TaiI	ACGT	3 cut(s)	207, 243, 386
TaqI	TCGA	5 cut(s)	324, 396, 402, 431, 436
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	377
TatI	WGTACW	1 cut(s)	610
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	5 cut(s)	4, 43, 256, 273, 428
TscAI	CASTG	2 cut(s)	105, 216
TseFI	GTSAC	2 cut(s)	340, 481
TseI	GCWGC	4 cut(s)	91, 94, 190, 421
Tsp45I	GTSAC	2 cut(s)	340, 481
TspDTI	ATGAA	1 cut(s)	131
TspMI	CCCGGG	1 cut(s)	335
TspRI	CASTG	2 cut(s)	105, 216
VpaK11BI	GGWCC	4 cut(s)	121, 228, 247, 312
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	395
XmaI	CCCGGG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.