Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005415.1

Orthogroup ID

OG0007781

Physical Location & Seq

Genomic Coordinates Forward (+)

23657 .. 24196

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005415.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaaggtccatccaatccccaagaggcgcaacatctccatccagtaccattcaagaagcccactctctgaagcccaggccctcctcggcctctcccacaagaagctccgccgcctcccccacgtcttcagccgcgtcctcgagctccccttccgctccgacgccgacgtcctcatcgaggagaaccccgactgcttccgcttcgtcgccgaaaccgagagcttcggccacgacgtcagggcccacaccgtcgaaatccaccccggggtgaccaagattgtcgtcagggaaagaggctccgcggccgagctgacgttggacgagctggagctcgacatgtggaggttccggctcccggagtccacccggcccgagctggccagggctgtttttgtcgacggggagctcattgtgaccgtgccgaagatggaggggatggacaattcggagggcggagacggcggcggcggcggtgctggtgggaatgggaatggggggttcagaggacgtatgggaaatcggctggtgcttgtacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.82

Weight (kDa)

6.66

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22530 AT4G14830
fragaria_vesca	FvH4_4g16300 FvH4_4g16300
malus_domestica	MD13G1194500.v1.1 MD16G1195400.v1.1
prunus_persica	Prupe.1G015400_v2.0.a1
pyrus_communis	pycom05g06220 pycom13g16690 pycom16g16460
rosa_chinensis	RchiOBHm_Chr4g0415991
rosa_laevigata	RLG00000008025
rosa_multiflora	Rmu_sc0005415.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359840
rosa_rugosa	Rorug02G0491700 Rorug03G0025900 Rorug04G0137200 Rorug06G0075100
rosa_samantha	Rh4AG199700 Rh4BG197200 Rh4CG210700 Rh5BG016200 Rh6BG368700
rosa_wichuraiana	Rw4G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	171, 237
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	2 cut(s)	135, 302
AcoI	YGGCCR	3 cut(s)	226, 303, 378
AcuI	CTGAAG	2 cut(s)	90, 112
AcyI	GRCGYC	3 cut(s)	162, 168, 234
AfaI	GTAC	2 cut(s)	47, 534
AfiI	CCNNNNNNNGG	3 cut(s)	178, 265, 355
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	54
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	75, 380
AluBI	AGCT	8 cut(s)	106, 145, 222, 310, 325, 331, 376, 406
AluI	AGCT	8 cut(s)	106, 145, 222, 310, 325, 331, 376, 406
Alw21I	GWGCWC	3 cut(s)	147, 333, 408
Alw26I	GTCTC	1 cut(s)	450
Ama87I	CYCGRG	3 cut(s)	140, 263, 371
AoxI	GGCC	7 cut(s)	78, 88, 226, 240, 303, 368, 378
ApaI	GGGCCC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	5 cut(s)	7, 79, 240, 241, 369
AsuC2I	CCSGG	4 cut(s)	264, 265, 356, 367
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	3 cut(s)	140, 263, 371
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	380
BanII	GRGCYC	4 cut(s)	147, 244, 333, 408
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	3 cut(s)	147, 333, 408
BccI	CCATC	4 cut(s)	18, 47, 421, 430
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	2 cut(s)	77, 382
BcnI	CCSGG	4 cut(s)	264, 265, 356, 367
BcoDI	GTCTC	1 cut(s)	450
BisI	GCNGC	6 cut(s)	112, 133, 303, 463, 466, 469
BlsI	GCNGC	6 cut(s)	113, 134, 304, 464, 467, 470
Bme1390I	CCNGG	6 cut(s)	77, 264, 265, 356, 367, 382
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	3 cut(s)	140, 263, 371
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	5 cut(s)	7, 79, 240, 241, 369
BmiI	GGNNCC	4 cut(s)	242, 298, 347, 353
BmrFI	CCNGG	6 cut(s)	77, 264, 265, 356, 367, 382
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	347
BpuMI	CCSGG	4 cut(s)	264, 265, 356, 367
BsaHI	GRCGYC	3 cut(s)	162, 168, 234
BsaJI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 265, 355
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	77, 382
BseDI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BseGI	GGATG	3 cut(s)	10, 39, 441
BseLI	CCNNNNNNNGG	3 cut(s)	178, 265, 355
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	74, 194
BseSI	GKGCMC	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	303
Bsh1236I	CGCG	2 cut(s)	135, 302
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	7 cut(s)	80, 90, 228, 242, 305, 370, 380
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	3 cut(s)	147, 333, 408
BsiHKCI	CYCGRG	3 cut(s)	140, 263, 371
BsiSI	CCGG	4 cut(s)	264, 349, 356, 367
BslI	CCNNNNNNNGG	3 cut(s)	178, 265, 355
BsmAI	GTCTC	1 cut(s)	450
BsmBI	CGTCTC	1 cut(s)	450
BsnI	GGCC	7 cut(s)	80, 90, 228, 242, 305, 370, 380
BsoBI	CYCGRG	3 cut(s)	140, 263, 371
Bsp120I	GGGCCC	1 cut(s)	240
Bsp1286I	GDGCHC	4 cut(s)	147, 244, 333, 408
Bsp1407I	TGTACA	1 cut(s)	532
BspANI	GGCC	7 cut(s)	80, 90, 228, 242, 305, 370, 380
BspFNI	CGCG	2 cut(s)	135, 302
BspLI	GGNNCC	4 cut(s)	242, 298, 347, 353
BsrBI	CCGCTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BssNI	GRCGYC	3 cut(s)	162, 168, 234
Bst2UI	CCWGG	2 cut(s)	77, 382
Bst4CI	ACNGT	3 cut(s)	250, 418, 537
BstACI	GRCGYC	3 cut(s)	162, 168, 234
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	10, 39, 441
BstFNI	CGCG	2 cut(s)	135, 302
BstHHI	GCGC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	450
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	2 cut(s)	459, 468
BstNI	CCWGG	2 cut(s)	77, 382
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	6 cut(s)	75, 262, 263, 354, 365, 380
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	2 cut(s)	135, 302
BstV2I	GAAGAC	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	7 cut(s)	80, 90, 228, 242, 305, 370, 380
BtgI	CCRYGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	10, 39, 441
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	5 cut(s)	7, 79, 240, 241, 369
Cfr42I	CCGCGG	1 cut(s)	303
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	2 cut(s)	124, 170
Csp6I	GTAC	2 cut(s)	46, 533
CviAII	CATG	1 cut(s)	337
CviQI	GTAC	2 cut(s)	46, 533
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	3 cut(s)	226, 303, 378
EagI	CGGCCG	1 cut(s)	303
EciI	GGCGGA	2 cut(s)	98, 468
Ecl136II	GAGCTC	3 cut(s)	145, 331, 406
EclXI	CGGCCG	1 cut(s)	303
Eco24I	GRGCYC	4 cut(s)	147, 244, 333, 408
Eco47I	GGWCC	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	3 cut(s)	145, 331, 406
Eco57I	CTGAAG	2 cut(s)	90, 112
Eco88I	CYCGRG	3 cut(s)	140, 263, 371
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	3 cut(s)	145, 331, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	79, 240
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	75, 380
EcoT38I	GRGCYC	4 cut(s)	147, 244, 333, 408
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	1 cut(s)	340
FaiI	YATR	2 cut(s)	338, 512
FatI	CATG	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	112, 133, 303, 463, 466, 469
FokI	GGATG	2 cut(s)	26, 448
FriOI	GRGCYC	4 cut(s)	147, 244, 333, 408
Fsp4HI	GCNGC	6 cut(s)	112, 133, 303, 463, 466, 469
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	6 cut(s)	112, 133, 303, 463, 466, 469
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	7 cut(s)	80, 90, 228, 242, 305, 370, 380
HapII	CCGG	4 cut(s)	264, 349, 356, 367
HgaI	GACGC	2 cut(s)	124, 170
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	3 cut(s)	162, 168, 234
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	4 cut(s)	264, 349, 356, 367
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	363, 397
Hpy188I	TCNGA	4 cut(s)	70, 160, 448, 503
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	2 cut(s)	363, 397
Hpy99I	CGWCG	6 cut(s)	164, 170, 209, 236, 254, 401
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	250, 418, 537
HpyCH4IV	ACGT	5 cut(s)	123, 168, 234, 314, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	459, 468
HpySE526I	ACGT	5 cut(s)	123, 168, 234, 314, 508
Hsp92I	GRCGYC	3 cut(s)	162, 168, 234
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	303
LmnI	GCTCC	7 cut(s)	111, 150, 161, 302, 328, 357, 403
MaeII	ACGT	5 cut(s)	123, 168, 234, 314, 508
MaeIII	GTNAC	2 cut(s)	268, 412
MbiI	CCGCTC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	118, 436
MhlI	GDGCHC	4 cut(s)	147, 244, 333, 408
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	183, 297
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	4 cut(s)	264, 349, 356, 367
MspR9I	CCNGG	6 cut(s)	77, 264, 265, 356, 367, 382
MvaI	CCWGG	2 cut(s)	77, 382
MvnI	CGCG	2 cut(s)	135, 302
MwoI	GCNNNNNNNGC	2 cut(s)	459, 468
NciI	CCSGG	4 cut(s)	264, 265, 356, 367
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	4 cut(s)	242, 298, 347, 353
NmeAIII	GCCGAG	2 cut(s)	66, 331
NmuCI	GTSAC	2 cut(s)	268, 412
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	140
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 213, 231
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	6 cut(s)	113, 134, 304, 464, 467, 470
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	3 cut(s)	147, 333, 408
Psp6I	CCWGG	2 cut(s)	75, 380
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	75, 380
PspN4I	GGNNCC	4 cut(s)	242, 298, 347, 353
PspOMI	GGGCCC	1 cut(s)	240
PspPI	GGNCC	5 cut(s)	7, 79, 240, 241, 369
PspXI	VCTCGAGB	1 cut(s)	140
RsaI	GTAC	2 cut(s)	47, 534
RsaNI	GTAC	2 cut(s)	46, 533
SacI	GAGCTC	3 cut(s)	147, 333, 408
SacII	CCGCGG	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	395
SatI	GCNGC	6 cut(s)	112, 133, 303, 463, 466, 469
Sau96I	GGNCC	5 cut(s)	7, 79, 240, 241, 369
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	6 cut(s)	77, 264, 265, 356, 367, 382
SduI	GDGCHC	4 cut(s)	147, 244, 333, 408
Sfr274I	CTCGAG	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	140
SmaI	CCCGGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	442
SstI	GAGCTC	3 cut(s)	147, 333, 408
StyD4I	CCNGG	6 cut(s)	75, 262, 263, 354, 365, 380
TaaI	ACNGT	3 cut(s)	250, 418, 537
TaiI	ACGT	5 cut(s)	126, 171, 237, 317, 511
TaqI	TCGA	5 cut(s)	141, 177, 252, 333, 396
TasI	AATT	1 cut(s)	442
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	6 cut(s)	114, 135, 305, 465, 468, 471
TseFI	GTSAC	2 cut(s)	268, 412
Tsp45I	GTSAC	2 cut(s)	268, 412
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	176
XceI	RCATGY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	396
ZraI	GACGTC	2 cut(s)	169, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.