RchiOBHm_Chr4g0415991

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007781
Physical Location & Seq
Forward (+)
40804819 .. 40805361
543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38616

Sequence Viewer

Length: 219 bp
ATGTGGAGGTTCCGGCTCCCGGAGTCGACCCGGCCCGAGCTGGCCAGGGCGGTTTTTGTCGACGGGGAGCTCATTGTGACGGTTCCGAAGATGGAGGGGATGGAGAATTCGGAGGGCGGAGATGGCGGGGAGGTTTGGGGTGGCGGCAGCGGTGGTGGTGGGAATGGGAATGGGGGGTTCAGAGGAGGTATGGGAAATCGGCTGGTGCTTGTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.49

Weight (kDa)

4.93

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 26, 60
AciI CCGC 5 cut(s) 50, 117, 126, 144, 150
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 19
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 2 cut(s) 40, 70
AluI AGCT 2 cut(s) 40, 70
Alw21I GWGCWC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 2 cut(s) 32, 42
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 2 cut(s) 20, 31
AvaI CYCGRG 1 cut(s) 35
BalI TGGCCA 1 cut(s) 44
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 159
BccI CCATC 3 cut(s) 85, 94, 116
BciT130I CCWGG 1 cut(s) 46
BcnI CCSGG 2 cut(s) 20, 31
BisI GCNGC 2 cut(s) 145, 148
BlsI GCNGC 2 cut(s) 146, 149
Bme1390I CCNGG 3 cut(s) 20, 31, 46
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 11, 17, 84
BmrFI CCNGG 3 cut(s) 20, 31, 46
BpuMI CCSGG 2 cut(s) 20, 31
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 2 cut(s) 34, 44
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 13, 20, 31
BslI CCNNNNNNNGG 1 cut(s) 19
BsnI GGCC 2 cut(s) 34, 44
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 211
BspACI CCGC 5 cut(s) 50, 117, 126, 144, 150
BspANI GGCC 2 cut(s) 34, 44
BspLI GGNNCC 3 cut(s) 11, 17, 84
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 82, 216
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 3 cut(s) 18, 29, 44
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 34, 44
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 212
CviJI RGCY 6 cut(s) 16, 34, 40, 44, 70, 202
CviKI_1 RGCY 6 cut(s) 16, 34, 40, 44, 70, 202
CviQI GTAC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 42
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 72
FaiI YATR 1 cut(s) 191
FauI CCCGC 1 cut(s) 119
FblI GTMKAC 2 cut(s) 26, 60
Fnu4HI GCNGC 2 cut(s) 145, 148
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 145, 148
GluI GCNGC 2 cut(s) 145, 148
HaeIII GGCC 2 cut(s) 34, 44
HapII CCGG 3 cut(s) 13, 20, 31
HincII GTYRAC 2 cut(s) 27, 61
HindII GTYRAC 2 cut(s) 27, 61
HinfI GANTC 1 cut(s) 23
HpaII CCGG 3 cut(s) 13, 20, 31
Hpy166II GTNNAC 2 cut(s) 27, 61
Hpy188I TCNGA 3 cut(s) 87, 112, 182
Hpy8I GTNNAC 2 cut(s) 27, 61
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 82, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 21, 67
LpnPI CCDG 7 cut(s) 26, 26, 31, 33, 44, 58, 188
Lsp1109I GCAGC 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 5 cut(s) 88, 106, 124, 176, 179
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 3 cut(s) 13, 20, 31
MspR9I CCNGG 3 cut(s) 20, 31, 46
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 123
NciI CCSGG 2 cut(s) 20, 31
NlaIV GGNNCC 3 cut(s) 11, 17, 84
NmuCI GTSAC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 2 cut(s) 146, 149
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 11, 17, 84
PspPI GGNCC 1 cut(s) 33
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 72
SalI GTCGAC 2 cut(s) 25, 59
SatI GCNGC 2 cut(s) 145, 148
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 20, 31, 46
SduI GDGCHC 1 cut(s) 72
SetI ASST 5 cut(s) 11, 42, 72, 135, 190
Sse9I AATT 1 cut(s) 106
SsiI CCGC 5 cut(s) 50, 117, 126, 144, 150
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 18, 29, 44
TaaI ACNGT 2 cut(s) 82, 216
TaqI TCGA 2 cut(s) 26, 60
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 147
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 76
XapI RAATTY 1 cut(s) 106
XmiI GTMKAC 2 cut(s) 26, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.