Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007781

Physical Location & Seq

Genomic Coordinates Reverse (-)

24512894 .. 24513877

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATTCTTCCTTTTCATAAAAACAACCACAACCCAATCAGGATTTTGATTCCCACCCAAGATTGGCCTTCACTTTTCACCCACAGGGCATCTTTGTTTTTCCTATTAATCTTGGCCCTGTCTTCCTTCTTCCCCATTGAAGCCATGAAGGTCCATCCAATCCCCAAGAGGCGCAACATCTCCATCCAGTACCATTCAAGAAGCCCACTTTCTGAAGCCCAGGCCCTCCTCGGCCTCACCCACAAGAAGCTCCGCCGCCTCCCCCATGTCTTCAGCCGCGTCCTCGAGCTCCCTTTCCGCTCCGACGCCGACGTCCTCATCGAGGAGAACCCCGACTGCTTCCGCTTCGTCGCCGAAACCGAGAGCTTCGGCCACGACGTGAGGGCCCACACCGTCGAAATCCACCCCGGGGTGACCAAGATTGTCGTCAGGGAAAGAGGGTCCGCGGCGGAGCTGACGTTGGACGAGCTGGAGCTGGACATGTGGAGGTTCCGGCTGCCGGAGTCGACCCGGCCGGAGCTGGCCAGGGCGGTTTTTGTTGACGGGGAGCTCATTGTGACGGTGCCGAAGATGGAGGGGATGGAGAATTTGGAGGGTGGAGATGGTGGGGAGGTTTGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGAATGGGAATGGGGGGTTCAGAGGAGGTATGGGAAATCGGCTTGTGCTTGTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.0

Weight (kDa)

6.56

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22530 AT4G14830
fragaria_vesca	FvH4_4g16300 FvH4_4g16300
malus_domestica	MD13G1194500.v1.1 MD16G1195400.v1.1
prunus_persica	Prupe.1G015400_v2.0.a1
pyrus_communis	pycom05g06220 pycom13g16690 pycom16g16460
rosa_chinensis	RchiOBHm_Chr4g0415991
rosa_laevigata	RLG00000008025
rosa_multiflora	Rmu_sc0005415.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359840
rosa_rugosa	Rorug02G0491700 Rorug03G0025900 Rorug04G0137200 Rorug06G0075100
rosa_samantha	Rh4AG199700 Rh4BG197200 Rh4CG210700 Rh5BG016200 Rh6BG368700
rosa_wichuraiana	Rw4G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	562
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	2 cut(s)	279, 446
AcoI	YGGCCR	3 cut(s)	370, 512, 522
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	234, 256
AcyI	GRCGYC	2 cut(s)	306, 312
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	191, 699
AfiI	CCNNNNNNNGG	4 cut(s)	63, 322, 409, 499
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	140, 198
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	219, 524
AluBI	AGCT	8 cut(s)	250, 289, 366, 454, 469, 475, 520, 550
AluI	AGCT	8 cut(s)	250, 289, 366, 454, 469, 475, 520, 550
Alw21I	GWGCWC	2 cut(s)	291, 552
Ama87I	CYCGRG	2 cut(s)	284, 407
AoxI	GGCC	8 cut(s)	65, 114, 222, 232, 370, 384, 512, 522
ApaI	GGGCCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	586
AseI	ATTAAT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	6 cut(s)	115, 151, 223, 384, 385, 441
AsuC2I	CCSGG	3 cut(s)	408, 409, 511
AsuHPI	GGTGA	3 cut(s)	70, 229, 424
AvaI	CYCGRG	2 cut(s)	284, 407
AvaII	GGWCC	2 cut(s)	151, 441
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	3 cut(s)	291, 388, 552
BbsI	GAAGAC	2 cut(s)	114, 262
Bbv12I	GWGCWC	2 cut(s)	291, 552
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	5 cut(s)	162, 191, 565, 574, 596
BciT130I	CCWGG	2 cut(s)	221, 526
BcnI	CCSGG	3 cut(s)	408, 409, 511
Bme1390I	CCNGG	5 cut(s)	221, 408, 409, 511, 526
Bme18I	GGWCC	2 cut(s)	151, 441
BmeT110I	CYCGRG	2 cut(s)	284, 407
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	6 cut(s)	115, 151, 223, 384, 385, 441
BmiI	GGNNCC	4 cut(s)	386, 442, 491, 564
BmrFI	CCNGG	5 cut(s)	221, 408, 409, 511, 526
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	2 cut(s)	114, 262
BpmI	CTGGAG	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	408, 409, 511
BsaHI	GRCGYC	2 cut(s)	306, 312
BsaJI	CCNNGG	7 cut(s)	219, 229, 406, 407, 408, 444, 525
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 322, 409, 499
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	221, 526
BseDI	CCNNGG	7 cut(s)	219, 229, 406, 407, 408, 444, 525
BseGI	GGATG	3 cut(s)	154, 183, 585
BseLI	CCNNNNNNNGG	4 cut(s)	63, 322, 409, 499
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	3 cut(s)	218, 338, 684
BseSI	GKGCMC	1 cut(s)	388
BseX3I	CGGCCG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	279, 446
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	8 cut(s)	67, 116, 224, 234, 372, 386, 514, 524
BshNI	GGYRCC	1 cut(s)	562
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	291, 552
BsiHKCI	CYCGRG	2 cut(s)	284, 407
BsiSI	CCGG	5 cut(s)	408, 493, 500, 511, 515
BslI	CCNNNNNNNGG	4 cut(s)	63, 322, 409, 499
BsnI	GGCC	8 cut(s)	67, 116, 224, 234, 372, 386, 514, 524
BsoBI	CYCGRG	2 cut(s)	284, 407
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	291, 388, 552
Bsp1407I	TGTACA	1 cut(s)	697
BspANI	GGCC	8 cut(s)	67, 116, 224, 234, 372, 386, 514, 524
BspFNI	CGCG	2 cut(s)	279, 446
BspLI	GGNNCC	4 cut(s)	386, 442, 491, 564
BspT107I	GGYRCC	1 cut(s)	562
BsrBI	CCGCTC	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	7 cut(s)	219, 229, 406, 407, 408, 444, 525
BssNI	GRCGYC	2 cut(s)	306, 312
Bst2UI	CCWGG	2 cut(s)	221, 526
Bst4CI	ACNGT	3 cut(s)	394, 562, 702
BstACI	GRCGYC	2 cut(s)	306, 312
BstAUI	TGTACA	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	412
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	3 cut(s)	154, 183, 585
BstFNI	CGCG	2 cut(s)	279, 446
BstHHI	GCGC	1 cut(s)	174
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	6 cut(s)	627, 630, 633, 636, 639, 642
BstNI	CCWGG	2 cut(s)	221, 526
BstNSI	RCATGY	1 cut(s)	484
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	5 cut(s)	219, 406, 407, 509, 524
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	2 cut(s)	279, 446
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	2 cut(s)	114, 262
BstZI	CGGCCG	1 cut(s)	512
BsuRI	GGCC	8 cut(s)	67, 116, 224, 234, 372, 386, 514, 524
BtgI	CCRYGG	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	3 cut(s)	154, 183, 585
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	6 cut(s)	115, 151, 223, 384, 385, 441
Cfr42I	CCGCGG	1 cut(s)	447
Cfr9I	CCCGGG	1 cut(s)	407
CseI	GACGC	2 cut(s)	268, 314
Csp6I	GTAC	2 cut(s)	190, 698
CviAII	CATG	3 cut(s)	145, 266, 481
CviQI	GTAC	2 cut(s)	190, 698
DraIII	CACNNNGTG	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	3 cut(s)	370, 512, 522
EagI	CGGCCG	1 cut(s)	512
EciI	GGCGGA	2 cut(s)	242, 464
Ecl136II	GAGCTC	2 cut(s)	289, 550
EclXI	CGGCCG	1 cut(s)	512
Eco24I	GRGCYC	3 cut(s)	291, 388, 552
Eco47I	GGWCC	2 cut(s)	151, 441
Eco52I	CGGCCG	1 cut(s)	512
Eco53kI	GAGCTC	2 cut(s)	289, 550
Eco57I	CTGAAG	2 cut(s)	234, 256
Eco88I	CYCGRG	2 cut(s)	284, 407
Eco91I	GGTNACC	1 cut(s)	412
EcoICRI	GAGCTC	2 cut(s)	289, 550
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	223, 384
EcoO65I	GGTNACC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	219, 524
EcoT38I	GRGCYC	3 cut(s)	291, 388, 552
FaeI	CATG	3 cut(s)	148, 269, 484
FaiI	YATR	5 cut(s)	18, 146, 267, 482, 677
FatI	CATG	3 cut(s)	144, 265, 480
FauI	CCCGC	1 cut(s)	638
FblI	GTMKAC	1 cut(s)	506
FokI	GGATG	3 cut(s)	141, 170, 592
FriOI	GRGCYC	3 cut(s)	291, 388, 552
GlaI	GCGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	8 cut(s)	67, 116, 224, 234, 372, 386, 514, 524
HapII	CCGG	5 cut(s)	408, 493, 500, 511, 515
HgaI	GACGC	2 cut(s)	268, 314
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	2 cut(s)	306, 312
Hin1II	CATG	3 cut(s)	148, 269, 484
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	507, 541
HindII	GTYRAC	2 cut(s)	507, 541
HinfI	GANTC	3 cut(s)	4, 49, 503
HpaII	CCGG	5 cut(s)	408, 493, 500, 511, 515
HphI	GGTGA	3 cut(s)	70, 229, 424
Hpy166II	GTNNAC	2 cut(s)	507, 541
Hpy188I	TCNGA	3 cut(s)	214, 304, 668
Hpy188III	TCNNGA	2 cut(s)	40, 198
Hpy8I	GTNNAC	2 cut(s)	507, 541
Hpy99I	CGWCG	5 cut(s)	308, 314, 353, 380, 398
HpyAV	CCTTC	3 cut(s)	78, 136, 142
HpyCH4III	ACNGT	3 cut(s)	394, 562, 702
HpyCH4IV	ACGT	3 cut(s)	312, 378, 458
HpyF10VI	GCNNNNNNNGC	6 cut(s)	627, 630, 633, 636, 639, 642
HpySE526I	ACGT	3 cut(s)	312, 378, 458
Hsp92I	GRCGYC	2 cut(s)	306, 312
Hsp92II	CATG	3 cut(s)	148, 269, 484
HspAI	GCGC	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	447
LmnI	GCTCC	7 cut(s)	255, 294, 305, 451, 472, 517, 547
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	3 cut(s)	312, 378, 458
MaeIII	GTNAC	2 cut(s)	412, 556
MbiI	CCGCTC	1 cut(s)	300
MboII	GAAGA	4 cut(s)	114, 121, 262, 580
MhlI	GDGCHC	3 cut(s)	291, 388, 552
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	1 cut(s)	586
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	327, 441
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	5 cut(s)	408, 493, 500, 511, 515
MspR9I	CCNGG	5 cut(s)	221, 408, 409, 511, 526
MvaI	CCWGG	2 cut(s)	221, 526
MvnI	CGCG	2 cut(s)	279, 446
MwoI	GCNNNNNNNGC	6 cut(s)	627, 630, 633, 636, 639, 642
NciI	CCSGG	3 cut(s)	408, 409, 511
NlaIII	CATG	3 cut(s)	148, 269, 484
NlaIV	GGNNCC	4 cut(s)	386, 442, 491, 564
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	412, 556
NspI	RCATGY	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 357, 375
PfeI	GAWTC	2 cut(s)	4, 49
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PscI	ACATGT	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	107
Psp124BI	GAGCTC	2 cut(s)	291, 552
Psp6I	CCWGG	2 cut(s)	219, 524
PspEI	GGTNACC	1 cut(s)	412
PspGI	CCWGG	2 cut(s)	219, 524
PspN4I	GGNNCC	4 cut(s)	386, 442, 491, 564
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	6 cut(s)	115, 151, 223, 384, 385, 441
PspXI	VCTCGAGB	1 cut(s)	284
RsaI	GTAC	2 cut(s)	191, 699
RsaNI	GTAC	2 cut(s)	190, 698
SacI	GAGCTC	2 cut(s)	291, 552
SacII	CCGCGG	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	107
Sau96I	GGNCC	6 cut(s)	115, 151, 223, 384, 385, 441
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	5 cut(s)	221, 408, 409, 511, 526
SduI	GDGCHC	3 cut(s)	291, 388, 552
SfaNI	GCATC	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	284
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	151, 441
SlaI	CTCGAG	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	586
SstI	GAGCTC	2 cut(s)	291, 552
StyD4I	CCNGG	5 cut(s)	219, 406, 407, 509, 524
TaaI	ACNGT	3 cut(s)	394, 562, 702
TaiI	ACGT	3 cut(s)	315, 381, 461
TaqI	TCGA	4 cut(s)	285, 321, 396, 506
TasI	AATT	1 cut(s)	586
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	2 cut(s)	4, 49
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseFI	GTSAC	2 cut(s)	412, 556
TseI	GCWGC	1 cut(s)	496
Tsp45I	GTSAC	2 cut(s)	412, 556
TspDTI	ATGAA	2 cut(s)	5, 161
TspMI	CCCGGG	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	151, 441
VspI	ATTAAT	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	284
XmaI	CCCGGG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	506
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.