Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1045 - 1207 | 9.9e-13 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1049 - 1340 | 7.2e-91 | SNF2-related domain |
| Helicase_C | PF00271 | 1366 - 1479 | 1.2e-21 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1574 - 1670 | 3.1e-16 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 4 cut(s) | 403, 5500, 5818, 10742 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 10558 |
| Acc16I | TGCGCA | 1 cut(s) | 5992 |
| Acc36I | ACCTGC | 5 cut(s) | 403, 5500, 5818, 9137, 10742 |
| AccB1I | GGYRCC | 3 cut(s) | 4765, 5797, 10930 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 260, 983, 6862, 8956 |
| AccI | GTMKAC | 6 cut(s) | 250, 1265, 2892, 6814, 7008, 7998 |
| AccII | CGCG | 2 cut(s) | 5118, 6724 |
| AccIII | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| AcoI | YGGCCR | 4 cut(s) | 207, 4336, 7140, 8940 |
| AcyI | GRCGYC | 3 cut(s) | 746, 4640, 8480 |
| AfeI | AGCGCT | 1 cut(s) | 2606 |
| AflII | CTTAAG | 2 cut(s) | 2231, 3061 |
| AflIII | ACRYGT | 6 cut(s) | 2095, 5410, 6304, 6520, 6752, 6875 |
| AgeI | ACCGGT | 3 cut(s) | 1232, 6197, 10912 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 358, 3719 |
| AjiI | CACGTC | 2 cut(s) | 1721, 5905 |
| AleI | CACNNNNGTG | 3 cut(s) | 1083, 6305, 9219 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5011, 5043 |
| Alw21I | GWGCWC | 9 cut(s) | 154, 2297, 3876, 4327, 4416, 6597, 8743, 9883, 10726 |
| Alw44I | GTGCAC | 2 cut(s) | 3872, 9879 |
| Ama87I | CYCGRG | 6 cut(s) | 750, 1629, 9434, 9785, 10107, 10665 |
| Aor13HI | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| Aor51HI | AGCGCT | 1 cut(s) | 2606 |
| ApaI | GGGCCC | 2 cut(s) | 3256, 3288 |
| ApaLI | GTGCAC | 2 cut(s) | 3872, 9879 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3851, 3883 |
| AseI | ATTAAT | 3 cut(s) | 90, 2715, 3264 |
| AsiGI | ACCGGT | 3 cut(s) | 1232, 6197, 10912 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1387, 2396, 2615, 5559, 6334, 9429 |
| AspLEI | GCGC | 8 cut(s) | 1217, 1312, 1378, 2607, 3553, 4315, 5993, 6724 |
| AsuC2I | CCSGG | 2 cut(s) | 3225, 3865 |
| AsuII | TTCGAA | 1 cut(s) | 3895 |
| AsuNHI | GCTAGC | 1 cut(s) | 1499 |
| AvaI | CYCGRG | 6 cut(s) | 750, 1629, 9434, 9785, 10107, 10665 |
| AvaII | GGWCC | 8 cut(s) | 232, 3188, 4375, 4826, 5619, 6401, 6415, 9149 |
| AxyI | CCTNAGG | 1 cut(s) | 7368 |
| BaeGI | GKGCMC | 6 cut(s) | 909, 3256, 3288, 3876, 9883, 10135 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 456, 456, 489, 489, 8900, 8933 |
| BalI | TGGCCA | 2 cut(s) | 4338, 8942 |
| BamHI | GGATCC | 2 cut(s) | 2682, 2813 |
| BanI | GGYRCC | 3 cut(s) | 4765, 5797, 10930 |
| BanII | GRGCYC | 5 cut(s) | 154, 2297, 3256, 3288, 4327 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6460, 6492 |
| BbsI | GAAGAC | 4 cut(s) | 156, 6246, 9765, 10635 |
| Bbv12I | GWGCWC | 9 cut(s) | 154, 2297, 3876, 4327, 4416, 6597, 8743, 9883, 10726 |
| BbvCI | CCTCAGC | 1 cut(s) | 808 |
| BceAI | ACGGC | 6 cut(s) | 1877, 2355, 7127, 9754, 10624, 10904 |
| BciVI | GTATCC | 4 cut(s) | 2669, 5191, 6704, 6832 |
| BclI | TGATCA | 5 cut(s) | 328, 2047, 3649, 3684, 7120 |
| BcnI | CCSGG | 2 cut(s) | 3225, 3865 |
| BfoI | RGCGCY | 2 cut(s) | 2608, 3554 |
| BfrI | CTTAAG | 2 cut(s) | 2231, 3061 |
| BfuAI | ACCTGC | 5 cut(s) | 403, 5500, 5818, 9137, 10742 |
| BfuI | GTATCC | 4 cut(s) | 2669, 5191, 6704, 6832 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4708 |
| BglII | AGATCT | 3 cut(s) | 2435, 7410, 7626 |
| BlpI | GCTNAGC | 2 cut(s) | 813, 3643 |
| BmcAI | AGTACT | 4 cut(s) | 3708, 5386, 6655, 7096 |
| Bme18I | GGWCC | 8 cut(s) | 232, 3188, 4375, 4826, 5619, 6401, 6415, 9149 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 358, 3719 |
| BmeT110I | CYCGRG | 6 cut(s) | 750, 1629, 9434, 9785, 10107, 10665 |
| BmgBI | CACGTC | 2 cut(s) | 1721, 5905 |
| BmrI | ACTGGG | 5 cut(s) | 615, 1767, 4430, 6168, 6491 |
| BmtI | GCTAGC | 1 cut(s) | 1503 |
| BmuI | ACTGGG | 5 cut(s) | 615, 1767, 4430, 6168, 6491 |
| BoxI | GACNNNNGTC | 1 cut(s) | 10330 |
| BpiI | GAAGAC | 4 cut(s) | 156, 6246, 9765, 10635 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 6076, 6108, 6667, 6699 |
| Bpu10I | CCTNAGC | 3 cut(s) | 808, 5346, 9489 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 813, 3643 |
| Bpu14I | TTCGAA | 1 cut(s) | 3895 |
| BpuEI | CTTGAG | 9 cut(s) | 885, 1051, 2452, 3557, 4022, 5025, 8181, 9999, 10233 |
| BpuMI | CCSGG | 2 cut(s) | 3225, 3865 |
| Bsa29I | ATCGAT | 1 cut(s) | 2676 |
| BsaBI | GATNNNNATC | 4 cut(s) | 288, 3232, 6576, 8679 |
| BsaHI | GRCGYC | 3 cut(s) | 746, 4640, 8480 |
| BsaI | GGTCTC | 1 cut(s) | 661 |
| Bse118I | RCCGGY | 3 cut(s) | 1232, 6197, 10912 |
| Bse21I | CCTNAGG | 1 cut(s) | 7368 |
| Bse8I | GATNNNNATC | 4 cut(s) | 288, 3232, 6576, 8679 |
| BseAI | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| BseCI | ATCGAT | 1 cut(s) | 2676 |
| BseJI | GATNNNNATC | 4 cut(s) | 288, 3232, 6576, 8679 |
| BseSI | GKGCMC | 6 cut(s) | 909, 3256, 3288, 3876, 9883, 10135 |
| BseYI | CCCAGC | 5 cut(s) | 1786, 1934, 1993, 2128, 5677 |
| BsgI | GTGCAG | 8 cut(s) | 1209, 1563, 2765, 4518, 5385, 9383, 9593, 10850 |
| Bsh1236I | CGCG | 2 cut(s) | 5118, 6724 |
| BshNI | GGYRCC | 3 cut(s) | 4765, 5797, 10930 |
| BshTI | ACCGGT | 3 cut(s) | 1232, 6197, 10912 |
| BshVI | ATCGAT | 1 cut(s) | 2676 |
| BsiHKAI | GWGCWC | 9 cut(s) | 154, 2297, 3876, 4327, 4416, 6597, 8743, 9883, 10726 |
| BsiHKCI | CYCGRG | 6 cut(s) | 750, 1629, 9434, 9785, 10107, 10665 |
| BslFI | GGGAC | 6 cut(s) | 361, 914, 4839, 5313, 5632, 5660 |
| BsmBI | CGTCTC | 8 cut(s) | 753, 2378, 3701, 6144, 8487, 9827, 10110, 10370 |
| BsmFI | GGGAC | 6 cut(s) | 361, 914, 4839, 5313, 5632, 5660 |
| BsmI | GAATGC | 6 cut(s) | 132, 1061, 3454, 3472, 4221, 6550 |
| Bso31I | GGTCTC | 1 cut(s) | 661 |
| BsoBI | CYCGRG | 6 cut(s) | 750, 1629, 9434, 9785, 10107, 10665 |
| Bsp119I | TTCGAA | 1 cut(s) | 3895 |
| Bsp120I | GGGCCC | 2 cut(s) | 3252, 3284 |
| Bsp13I | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| Bsp1407I | TGTACA | 2 cut(s) | 5443, 8839 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 813, 3643 |
| Bsp19I | CCATGG | 4 cut(s) | 75, 1113, 7761, 10881 |
| BspDI | ATCGAT | 1 cut(s) | 2676 |
| BspEI | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| BspFNI | CGCG | 2 cut(s) | 5118, 6724 |
| BspHI | TCATGA | 2 cut(s) | 331, 5836 |
| BspMAI | CTGCAG | 7 cut(s) | 4261, 4408, 5161, 5578, 6388, 7843, 8035 |
| BspMI | ACCTGC | 5 cut(s) | 403, 5500, 5818, 9137, 10742 |
| BspOI | GCTAGC | 1 cut(s) | 1503 |
| BspQI | GCTCTTC | 3 cut(s) | 4878, 6114, 7245 |
| BspT104I | TTCGAA | 1 cut(s) | 3895 |
| BspT107I | GGYRCC | 3 cut(s) | 4765, 5797, 10930 |
| BspTI | CTTAAG | 2 cut(s) | 2231, 3061 |
| BspTNI | GGTCTC | 1 cut(s) | 661 |
| BsrFI | RCCGGY | 3 cut(s) | 1232, 6197, 10912 |
| BsrGI | TGTACA | 2 cut(s) | 5443, 8839 |
| BssAI | RCCGGY | 3 cut(s) | 1232, 6197, 10912 |
| BssNI | GRCGYC | 3 cut(s) | 746, 4640, 8480 |
| BssT1I | CCWWGG | 9 cut(s) | 68, 75, 1113, 1578, 2056, 6936, 7293, 7761, 10881 |
| BstACI | GRCGYC | 3 cut(s) | 746, 4640, 8480 |
| BstAFI | CTTAAG | 2 cut(s) | 2231, 3061 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 1469, 2258, 3970, 5810, 5942, 6047, 8975 |
| BstAUI | TGTACA | 2 cut(s) | 5443, 8839 |
| BstBI | TTCGAA | 1 cut(s) | 3895 |
| BstDSI | CCRYGG | 6 cut(s) | 75, 1113, 5116, 7143, 7761, 10881 |
| BstEII | GGTNACC | 1 cut(s) | 5092 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1707, 5946, 10320 |
| BstFNI | CGCG | 2 cut(s) | 5118, 6724 |
| BstH2I | RGCGCY | 2 cut(s) | 2608, 3554 |
| BstHHI | GCGC | 8 cut(s) | 1217, 1312, 1378, 2607, 3553, 4315, 5993, 6724 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 10330 |
| BstPI | GGTNACC | 1 cut(s) | 5092 |
| BstSLI | GKGCMC | 6 cut(s) | 909, 3256, 3288, 3876, 9883, 10135 |
| BstUI | CGCG | 2 cut(s) | 5118, 6724 |
| BstV2I | GAAGAC | 4 cut(s) | 156, 6246, 9765, 10635 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1952, 3056, 6307, 10300 |
| Bsu15I | ATCGAT | 1 cut(s) | 2676 |
| Bsu36I | CCTNAGG | 1 cut(s) | 7368 |
| BsuI | GTATCC | 4 cut(s) | 2669, 5191, 6704, 6832 |
| BsuTUI | ATCGAT | 1 cut(s) | 2676 |
| BtgI | CCRYGG | 6 cut(s) | 75, 1113, 5116, 7143, 7761, 10881 |
| BtgZI | GCGATG | 4 cut(s) | 1677, 3422, 4763, 10494 |
| BtrI | CACGTC | 2 cut(s) | 1721, 5905 |
| BtsI | GCAGTG | 6 cut(s) | 1319, 4585, 7565, 7637, 8210, 10679 |
| BveI | ACCTGC | 5 cut(s) | 403, 5500, 5818, 9137, 10742 |
| CciI | TCATGA | 2 cut(s) | 331, 5836 |
| CfoI | GCGC | 8 cut(s) | 1217, 1312, 1378, 2607, 3553, 4315, 5993, 6724 |
| Cfr10I | RCCGGY | 3 cut(s) | 1232, 6197, 10912 |
| Cfr42I | CCGCGG | 1 cut(s) | 5119 |
| ClaI | ATCGAT | 1 cut(s) | 2676 |
| CsiI | ACCWGGT | 1 cut(s) | 571 |
| CspAI | ACCGGT | 3 cut(s) | 1232, 6197, 10912 |
| DraI | TTTAAA | 5 cut(s) | 2404, 4560, 5604, 5998, 9699 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10558 |
| DriI | GACNNNNNGTC | 2 cut(s) | 358, 3719 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10558 |
| EaeI | YGGCCR | 4 cut(s) | 207, 4336, 7140, 8940 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 358, 3719 |
| Ecl136II | GAGCTC | 3 cut(s) | 152, 2295, 4325 |
| Eco130I | CCWWGG | 9 cut(s) | 68, 75, 1113, 1578, 2056, 6936, 7293, 7761, 10881 |
| Eco24I | GRGCYC | 5 cut(s) | 154, 2297, 3256, 3288, 4327 |
| Eco31I | GGTCTC | 1 cut(s) | 661 |
| Eco47I | GGWCC | 8 cut(s) | 232, 3188, 4375, 4826, 5619, 6401, 6415, 9149 |
| Eco47III | AGCGCT | 1 cut(s) | 2606 |
| Eco53kI | GAGCTC | 3 cut(s) | 152, 2295, 4325 |
| Eco81I | CCTNAGG | 1 cut(s) | 7368 |
| Eco88I | CYCGRG | 6 cut(s) | 750, 1629, 9434, 9785, 10107, 10665 |
| Eco91I | GGTNACC | 1 cut(s) | 5092 |
| EcoICRI | GAGCTC | 3 cut(s) | 152, 2295, 4325 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1707, 5946, 10320 |
| EcoO109I | RGGNCCY | 8 cut(s) | 3188, 3253, 3285, 4826, 5939, 6415, 7181, 9149 |
| EcoO65I | GGTNACC | 1 cut(s) | 5092 |
| EcoRI | GAATTC | 3 cut(s) | 2520, 2540, 9530 |
| EcoT14I | CCWWGG | 9 cut(s) | 68, 75, 1113, 1578, 2056, 6936, 7293, 7761, 10881 |
| EcoT22I | ATGCAT | 5 cut(s) | 4664, 5827, 9064, 10264, 10480 |
| EcoT38I | GRGCYC | 5 cut(s) | 154, 2297, 3256, 3288, 4327 |
| ErhI | CCWWGG | 9 cut(s) | 68, 75, 1113, 1578, 2056, 6936, 7293, 7761, 10881 |
| Esp3I | CGTCTC | 8 cut(s) | 753, 2378, 3701, 6144, 8487, 9827, 10110, 10370 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1204, 1236, 2528, 2560, 2933, 2965 |
| FaqI | GGGAC | 6 cut(s) | 361, 914, 4839, 5313, 5632, 5660 |
| FauI | CCCGC | 1 cut(s) | 4768 |
| FauNDI | CATATG | 1 cut(s) | 4879 |
| FbaI | TGATCA | 5 cut(s) | 328, 2047, 3649, 3684, 7120 |
| FblI | GTMKAC | 6 cut(s) | 250, 1265, 2892, 6814, 7008, 7998 |
| FriOI | GRGCYC | 5 cut(s) | 154, 2297, 3256, 3288, 4327 |
| FspI | TGCGCA | 1 cut(s) | 5992 |
| GlaI | GCGC | 8 cut(s) | 1216, 1311, 1377, 2606, 3552, 4314, 5992, 6723 |
| GsaI | CCCAGC | 5 cut(s) | 1790, 1938, 1997, 2132, 5681 |
| HaeII | RGCGCY | 2 cut(s) | 2608, 3554 |
| HhaI | GCGC | 8 cut(s) | 1217, 1312, 1378, 2607, 3553, 4315, 5993, 6724 |
| Hin1I | GRCGYC | 3 cut(s) | 746, 4640, 8480 |
| Hin6I | GCGC | 8 cut(s) | 1215, 1310, 1376, 2605, 3551, 4313, 5991, 6722 |
| HinP1I | GCGC | 8 cut(s) | 1215, 1310, 1376, 2605, 3551, 4313, 5991, 6722 |
| HincII | GTYRAC | 6 cut(s) | 969, 1447, 3510, 5223, 8203, 8298 |
| HindII | GTYRAC | 6 cut(s) | 969, 1447, 3510, 5223, 8203, 8298 |
| HindIII | AAGCTT | 4 cut(s) | 2807, 2819, 3809, 3998 |
| HpaI | GTTAAC | 3 cut(s) | 3510, 8203, 8298 |
| Hpy99I | CGWCG | 2 cut(s) | 5463, 6363 |
| Hsp92I | GRCGYC | 3 cut(s) | 746, 4640, 8480 |
| HspAI | GCGC | 8 cut(s) | 1215, 1310, 1376, 2605, 3551, 4313, 5991, 6722 |
| Kpn2I | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| Ksp22I | TGATCA | 5 cut(s) | 328, 2047, 3649, 3684, 7120 |
| KspAI | GTTAAC | 3 cut(s) | 3510, 8203, 8298 |
| KspI | CCGCGG | 1 cut(s) | 5119 |
| LguI | GCTCTTC | 3 cut(s) | 4878, 6114, 7245 |
| MabI | ACCWGGT | 1 cut(s) | 571 |
| MfeI | CAATTG | 1 cut(s) | 6159 |
| MlsI | TGGCCA | 2 cut(s) | 4338, 8942 |
| MluNI | TGGCCA | 2 cut(s) | 4338, 8942 |
| Mox20I | TGGCCA | 2 cut(s) | 4338, 8942 |
| Mph1103I | ATGCAT | 5 cut(s) | 4664, 5827, 9064, 10264, 10480 |
| MroI | TCCGGA | 3 cut(s) | 2376, 8155, 10192 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1387, 2396, 2615, 5559, 6334, 9429 |
| MscI | TGGCCA | 2 cut(s) | 4338, 8942 |
| Msp20I | TGGCCA | 2 cut(s) | 4338, 8942 |
| MspCI | CTTAAG | 2 cut(s) | 2231, 3061 |
| MunI | CAATTG | 1 cut(s) | 6159 |
| Mva1269I | GAATGC | 6 cut(s) | 132, 1061, 3454, 3472, 4221, 6550 |
| MvnI | CGCG | 2 cut(s) | 5118, 6724 |
| NciI | CCSGG | 2 cut(s) | 3225, 3865 |
| NcoI | CCATGG | 4 cut(s) | 75, 1113, 7761, 10881 |
| NdeI | CATATG | 1 cut(s) | 4879 |
| NheI | GCTAGC | 1 cut(s) | 1499 |
| NmeAIII | GCCGAG | 1 cut(s) | 4687 |
| NsbI | TGCGCA | 1 cut(s) | 5992 |
| NsiI | ATGCAT | 5 cut(s) | 4664, 5827, 9064, 10264, 10480 |
| NspV | TTCGAA | 1 cut(s) | 3895 |
| OliI | CACNNNNGTG | 3 cut(s) | 1083, 6305, 9219 |
| PaeI | GCATGC | 4 cut(s) | 824, 1276, 1507, 4662 |
| PaeR7I | CTCGAG | 1 cut(s) | 1629 |
| PagI | TCATGA | 2 cut(s) | 331, 5836 |
| PaqCI | CACCTGC | 4 cut(s) | 403, 5500, 5818, 10742 |
| PciI | ACATGT | 5 cut(s) | 2095, 5410, 6304, 6520, 6875 |
| PciSI | GCTCTTC | 3 cut(s) | 4878, 6114, 7245 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2662, 6134 |
| PctI | GAATGC | 6 cut(s) | 132, 1061, 3454, 3472, 4221, 6550 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1387, 2396, 2615, 5559, 6334, 9429 |
| PflFI | GACNNNGTC | 1 cut(s) | 9733 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 260, 983, 6862, 8956 |
| PfoI | TCCNGGA | 1 cut(s) | 1563 |
| PinAI | ACCGGT | 3 cut(s) | 1232, 6197, 10912 |
| PpuMI | RGGWCCY | 4 cut(s) | 3188, 4826, 6415, 9149 |
| PscI | ACATGT | 5 cut(s) | 2095, 5410, 6304, 6520, 6875 |
| PshAI | GACNNNNGTC | 1 cut(s) | 10330 |
| PshBI | ATTAAT | 3 cut(s) | 90, 2715, 3264 |
| Psp124BI | GAGCTC | 3 cut(s) | 154, 2297, 4327 |
| Psp5II | RGGWCCY | 4 cut(s) | 3188, 4826, 6415, 9149 |
| PspEI | GGTNACC | 1 cut(s) | 5092 |
| PspFI | CCCAGC | 5 cut(s) | 1786, 1934, 1993, 2128, 5677 |
| PspOMI | GGGCCC | 2 cut(s) | 3252, 3284 |
| PspPPI | RGGWCCY | 4 cut(s) | 3188, 4826, 6415, 9149 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 6646, 6678, 10161, 10193 |
| PstI | CTGCAG | 7 cut(s) | 4261, 4408, 5161, 5578, 6388, 7843, 8035 |
| PsyI | GACNNNGTC | 1 cut(s) | 9733 |
| PvuII | CAGCTG | 7 cut(s) | 1836, 3647, 5681, 6047, 6389, 7064, 10399 |
| SacI | GAGCTC | 3 cut(s) | 154, 2297, 4327 |
| SacII | CCGCGG | 1 cut(s) | 5119 |
| SapI | GCTCTTC | 3 cut(s) | 4878, 6114, 7245 |
| ScaI | AGTACT | 4 cut(s) | 3708, 5386, 6655, 7096 |
| SexAI | ACCWGGT | 1 cut(s) | 571 |
| Sfr274I | CTCGAG | 1 cut(s) | 1629 |
| Sfr303I | CCGCGG | 1 cut(s) | 5119 |
| SfuI | TTCGAA | 1 cut(s) | 3895 |
| SgrAI | CRCCGGYG | 1 cut(s) | 6197 |
| SgrBI | CCGCGG | 1 cut(s) | 5119 |
| SinI | GGWCC | 8 cut(s) | 232, 3188, 4375, 4826, 5619, 6401, 6415, 9149 |
| SlaI | CTCGAG | 1 cut(s) | 1629 |
| SphI | GCATGC | 4 cut(s) | 824, 1276, 1507, 4662 |
| SspI | AATATT | 3 cut(s) | 613, 4275, 4493 |
| SstI | GAGCTC | 3 cut(s) | 154, 2297, 4327 |
| StyI | CCWWGG | 9 cut(s) | 68, 75, 1113, 1578, 2056, 6936, 7293, 7761, 10881 |
| TaqII | GACCGA | 4 cut(s) | 4029, 5636, 5996, 8443 |
| TatI | WGTACW | 8 cut(s) | 272, 2160, 3706, 5384, 5443, 6653, 7094, 8839 |
| TauI | GCSGC | 3 cut(s) | 5118, 9818, 10219 |
| TspGWI | ACGGA | 5 cut(s) | 2432, 4298, 9437, 10381, 10820 |
| Tth111I | GACNNNGTC | 1 cut(s) | 9733 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 260, 983, 6862, 8956 |
| Vha464I | CTTAAG | 2 cut(s) | 2231, 3061 |
| VneI | GTGCAC | 2 cut(s) | 3872, 9879 |
| VpaK11BI | GGWCC | 8 cut(s) | 232, 3188, 4375, 4826, 5619, 6401, 6415, 9149 |
| VspI | ATTAAT | 3 cut(s) | 90, 2715, 3264 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1707, 5946, 10320 |
| XbaI | TCTAGA | 3 cut(s) | 1223, 2009, 9172 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 202, 6943 |
| XhoI | CTCGAG | 1 cut(s) | 1629 |
| XmiI | GTMKAC | 6 cut(s) | 250, 1265, 2892, 6814, 7008, 7998 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1387, 2396, 2615, 5559, 6334, 9429 |
| ZrmI | AGTACT | 4 cut(s) | 3708, 5386, 6655, 7096 |
| Zsp2I | ATGCAT | 5 cut(s) | 4664, 5827, 9064, 10264, 10480 |