Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1002 - 1164 | 1.4e-12 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1006 - 1297 | 3.7e-91 | SNF2-related domain |
| Helicase_C | PF00271 | 1323 - 1436 | 1.9e-21 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1531 - 1627 | 4.5e-14 | Snf2-ATP coupling, chromatin remodelling complex |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3953 |
| AarI | CACCTGC | 4 cut(s) | 652, 2027, 5836, 7009 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 6769 |
| Acc16I | TGCGCA | 1 cut(s) | 7747 |
| Acc36I | ACCTGC | 5 cut(s) | 652, 2027, 5836, 7009, 9519 |
| Acc65I | GGTACC | 1 cut(s) | 9475 |
| AccB1I | GGYRCC | 6 cut(s) | 3254, 4133, 5449, 5788, 5815, 9475 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 647, 1058, 4745, 6874 |
| AccBSI | CCGCTC | 1 cut(s) | 9066 |
| AccII | CGCG | 3 cut(s) | 3835, 4131, 5794 |
| AccIII | TCCGGA | 2 cut(s) | 3696, 7262 |
| AclI | AACGTT | 1 cut(s) | 4810 |
| AcoI | YGGCCR | 4 cut(s) | 4306, 4816, 7498, 9990 |
| AcyI | GRCGYC | 2 cut(s) | 5450, 5816 |
| AdeI | CACNNNGTG | 1 cut(s) | 5465 |
| AflII | CTTAAG | 3 cut(s) | 2564, 3031, 6448 |
| AflIII | ACRYGT | 2 cut(s) | 2234, 6764 |
| AgeI | ACCGGT | 2 cut(s) | 2996, 6212 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 442, 3689, 4966 |
| AhlI | ACTAGT | 1 cut(s) | 5282 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1537, 1569, 7196, 7228, 10065, 10097 |
| AleI | CACNNNNGTG | 2 cut(s) | 8951, 9149 |
| Alw44I | GTGCAC | 2 cut(s) | 3842, 7653 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1130, 1769, 5965, 7133, 7856 |
| Ama87I | CYCGRG | 7 cut(s) | 822, 3506, 4790, 5218, 5741, 6788, 7152 |
| Aor13HI | TCCGGA | 2 cut(s) | 3696, 7262 |
| ApaI | GGGCCC | 2 cut(s) | 3226, 5225 |
| ApaLI | GTGCAC | 2 cut(s) | 3842, 7653 |
| AseI | ATTAAT | 2 cut(s) | 174, 3122 |
| AsiGI | ACCGGT | 2 cut(s) | 2996, 6212 |
| Asp718I | GGTACC | 1 cut(s) | 9475 |
| AspA2I | CCTAGG | 1 cut(s) | 3094 |
| AspLEI | GCGC | 7 cut(s) | 1528, 3523, 3835, 5452, 5818, 7748, 9406 |
| AsuC2I | CCSGG | 2 cut(s) | 1970, 4820 |
| AvaI | CYCGRG | 7 cut(s) | 822, 3506, 4790, 5218, 5741, 6788, 7152 |
| AvrII | CCTAGG | 1 cut(s) | 3094 |
| AxyI | CCTNAGG | 2 cut(s) | 3261, 4097 |
| BaeGI | GKGCMC | 7 cut(s) | 3226, 3846, 4138, 5225, 5791, 7657, 9156 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 6027, 6060 |
| BalI | TGGCCA | 1 cut(s) | 7500 |
| BamHI | GGATCC | 2 cut(s) | 380, 2652 |
| BanI | GGYRCC | 6 cut(s) | 3254, 4133, 5449, 5788, 5815, 9475 |
| BanII | GRGCYC | 9 cut(s) | 829, 2267, 3226, 3464, 4297, 5225, 8197, 8342, 9221 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4314, 4346 |
| BauI | CACGAG | 1 cut(s) | 6735 |
| BbvCI | CCTCAGC | 1 cut(s) | 8073 |
| BceAI | ACGGC | 5 cut(s) | 2325, 5076, 6687, 8287, 9977 |
| BciVI | GTATCC | 4 cut(s) | 2639, 5167, 6716, 8125 |
| BclI | TGATCA | 4 cut(s) | 412, 2023, 5641, 9445 |
| BcnI | CCSGG | 2 cut(s) | 1970, 4820 |
| BcuI | ACTAGT | 1 cut(s) | 5282 |
| BfmI | CTRYAG | 7 cut(s) | 600, 4008, 4227, 4374, 6123, 7056, 9606 |
| BfoI | RGCGCY | 3 cut(s) | 3524, 5453, 5819 |
| BfrI | CTTAAG | 3 cut(s) | 2564, 3031, 6448 |
| BfuAI | ACCTGC | 5 cut(s) | 652, 2027, 5836, 7009, 9519 |
| BfuI | GTATCC | 4 cut(s) | 2639, 5167, 6716, 8125 |
| BglII | AGATCT | 1 cut(s) | 6047 |
| BlnI | CCTAGG | 1 cut(s) | 3094 |
| BlpI | GCTNAGC | 4 cut(s) | 2910, 2976, 4380, 9400 |
| BmcAI | AGTACT | 6 cut(s) | 2939, 3678, 4323, 5575, 8523, 9211 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 442, 3689, 4966 |
| BmeT110I | CYCGRG | 7 cut(s) | 822, 3506, 4790, 5218, 5741, 6788, 7152 |
| BmrI | ACTGGG | 6 cut(s) | 1310, 1611, 3941, 5187, 7385, 8037 |
| BmuI | ACTGGG | 6 cut(s) | 1310, 1611, 3941, 5187, 7385, 8037 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 7031, 7063 |
| BpmI | CTGGAG | 5 cut(s) | 1692, 6654, 7665, 7833, 9963 |
| Bpu10I | CCTNAGC | 3 cut(s) | 7458, 8073, 9624 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 2910, 2976, 4380, 9400 |
| BpuEI | CTTGAG | 7 cut(s) | 640, 957, 1123, 2422, 3992, 8181, 9281 |
| BpuMI | CCSGG | 2 cut(s) | 1970, 4820 |
| Bsa29I | ATCGAT | 1 cut(s) | 3985 |
| BsaAI | YACGTR | 1 cut(s) | 87 |
| BsaBI | GATNNNNATC | 3 cut(s) | 372, 4260, 8751 |
| BsaHI | GRCGYC | 2 cut(s) | 5450, 5816 |
| BsaI | GGTCTC | 4 cut(s) | 736, 1189, 1781, 4649 |
| Bse118I | RCCGGY | 3 cut(s) | 1801, 2996, 6212 |
| Bse21I | CCTNAGG | 2 cut(s) | 3261, 4097 |
| Bse3DI | GCAATG | 9 cut(s) | 1594, 1815, 1942, 2935, 4725, 4865, 5142, 5916, 7800 |
| Bse8I | GATNNNNATC | 3 cut(s) | 372, 4260, 8751 |
| BseAI | TCCGGA | 2 cut(s) | 3696, 7262 |
| BseCI | ATCGAT | 1 cut(s) | 3985 |
| BseJI | GATNNNNATC | 3 cut(s) | 372, 4260, 8751 |
| BseMI | GCAATG | 9 cut(s) | 1594, 1815, 1942, 2935, 4725, 4865, 5142, 5916, 7800 |
| BseSI | GKGCMC | 7 cut(s) | 3226, 3846, 4138, 5225, 5791, 7657, 9156 |
| BseYI | CCCAGC | 3 cut(s) | 4390, 6937, 9088 |
| BsgI | GTGCAG | 7 cut(s) | 1281, 1308, 2735, 4488, 6138, 6486, 6996 |
| Bsh1236I | CGCG | 3 cut(s) | 3835, 4131, 5794 |
| BshNI | GGYRCC | 6 cut(s) | 3254, 4133, 5449, 5788, 5815, 9475 |
| BshTI | ACCGGT | 2 cut(s) | 2996, 6212 |
| BshVI | ATCGAT | 1 cut(s) | 3985 |
| BsiHKCI | CYCGRG | 7 cut(s) | 822, 3506, 4790, 5218, 5741, 6788, 7152 |
| BsmBI | CGTCTC | 4 cut(s) | 1053, 2348, 3262, 8712 |
| BsmI | GAATGC | 5 cut(s) | 3424, 4191, 6472, 9637, 9815 |
| Bso31I | GGTCTC | 4 cut(s) | 736, 1189, 1781, 4649 |
| BsoBI | CYCGRG | 7 cut(s) | 822, 3506, 4790, 5218, 5741, 6788, 7152 |
| Bsp120I | GGGCCC | 2 cut(s) | 3222, 5221 |
| Bsp13I | TCCGGA | 2 cut(s) | 3696, 7262 |
| Bsp1407I | TGTACA | 1 cut(s) | 5272 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 2910, 2976, 4380, 9400 |
| Bsp19I | CCATGG | 2 cut(s) | 159, 9705 |
| BspDI | ATCGAT | 1 cut(s) | 3985 |
| BspEI | TCCGGA | 2 cut(s) | 3696, 7262 |
| BspFNI | CGCG | 3 cut(s) | 3835, 4131, 5794 |
| BspHI | TCATGA | 4 cut(s) | 415, 6586, 7936, 8176 |
| BspMAI | CTGCAG | 4 cut(s) | 604, 4231, 4378, 6127 |
| BspMI | ACCTGC | 5 cut(s) | 652, 2027, 5836, 7009, 9519 |
| BspQI | GCTCTTC | 5 cut(s) | 2272, 2469, 4848, 6319, 9226 |
| BspT107I | GGYRCC | 6 cut(s) | 3254, 4133, 5449, 5788, 5815, 9475 |
| BspTI | CTTAAG | 3 cut(s) | 2564, 3031, 6448 |
| BspTNI | GGTCTC | 4 cut(s) | 736, 1189, 1781, 4649 |
| BsrBI | CCGCTC | 1 cut(s) | 9066 |
| BsrDI | GCAATG | 9 cut(s) | 1594, 1815, 1942, 2935, 4725, 4865, 5142, 5916, 7800 |
| BsrFI | RCCGGY | 3 cut(s) | 1801, 2996, 6212 |
| BsrGI | TGTACA | 1 cut(s) | 5272 |
| BssAI | RCCGGY | 3 cut(s) | 1801, 2996, 6212 |
| BssNI | GRCGYC | 2 cut(s) | 5450, 5816 |
| BssSI | CACGAG | 1 cut(s) | 6735 |
| BssT1I | CCWWGG | 7 cut(s) | 159, 3094, 7332, 7488, 8247, 9462, 9705 |
| Bst2BI | CACGAG | 1 cut(s) | 6735 |
| BstACI | GRCGYC | 2 cut(s) | 5450, 5816 |
| BstAFI | CTTAAG | 3 cut(s) | 2564, 3031, 6448 |
| BstAUI | TGTACA | 1 cut(s) | 5272 |
| BstBAI | YACGTR | 1 cut(s) | 87 |
| BstDSI | CCRYGG | 6 cut(s) | 159, 5092, 6201, 9705, 9831, 9993 |
| BstEII | GGTNACC | 3 cut(s) | 3404, 5068, 9694 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1470, 5622 |
| BstFNI | CGCG | 3 cut(s) | 3835, 4131, 5794 |
| BstH2I | RGCGCY | 3 cut(s) | 3524, 5453, 5819 |
| BstHHI | GCGC | 7 cut(s) | 1528, 3523, 3835, 5452, 5818, 7748, 9406 |
| BstNSI | RCATGY | 6 cut(s) | 1348, 2238, 4951, 6093, 7843, 7982 |
| BstPI | GGTNACC | 3 cut(s) | 3404, 5068, 9694 |
| BstSFI | CTRYAG | 7 cut(s) | 600, 4008, 4227, 4374, 6123, 7056, 9606 |
| BstSLI | GKGCMC | 7 cut(s) | 3226, 3846, 4138, 5225, 5791, 7657, 9156 |
| BstUI | CGCG | 3 cut(s) | 3835, 4131, 5794 |
| BstX2I | RGATCY | 8 cut(s) | 380, 1334, 1490, 2652, 4784, 5962, 6047, 8939 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 553, 1748 |
| BstYI | RGATCY | 8 cut(s) | 380, 1334, 1490, 2652, 4784, 5962, 6047, 8939 |
| Bsu15I | ATCGAT | 1 cut(s) | 3985 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3261, 4097 |
| BsuI | GTATCC | 4 cut(s) | 2639, 5167, 6716, 8125 |
| BsuTUI | ATCGAT | 1 cut(s) | 3985 |
| BtgI | CCRYGG | 6 cut(s) | 159, 5092, 6201, 9705, 9831, 9993 |
| BtgZI | GCGATG | 1 cut(s) | 10101 |
| BtsI | GCAGTG | 2 cut(s) | 746, 4555 |
| BveI | ACCTGC | 5 cut(s) | 652, 2027, 5836, 7009, 9519 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1130, 1769, 5965, 7133, 7856 |
| CciI | TCATGA | 4 cut(s) | 415, 6586, 7936, 8176 |
| CfoI | GCGC | 7 cut(s) | 1528, 3523, 3835, 5452, 5818, 7748, 9406 |
| Cfr10I | RCCGGY | 3 cut(s) | 1801, 2996, 6212 |
| ClaI | ATCGAT | 1 cut(s) | 3985 |
| CpoI | CGGWCCG | 1 cut(s) | 335 |
| CseI | GACGC | 3 cut(s) | 2287, 8729, 9890 |
| CsiI | ACCWGGT | 1 cut(s) | 5461 |
| CspAI | ACCGGT | 2 cut(s) | 2996, 6212 |
| CspI | CGGWCCG | 1 cut(s) | 335 |
| DinI | GGCGCC | 2 cut(s) | 5451, 5817 |
| DraI | TTTAAA | 3 cut(s) | 2560, 7893, 8463 |
| DraIII | CACNNNGTG | 1 cut(s) | 5465 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 6769 |
| DriI | GACNNNNNGTC | 3 cut(s) | 442, 3689, 4966 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 6769 |
| EaeI | YGGCCR | 4 cut(s) | 4306, 4816, 7498, 9990 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 442, 3689, 4966 |
| EciI | GGCGGA | 1 cut(s) | 9512 |
| Ecl136II | GAGCTC | 3 cut(s) | 2265, 3462, 8195 |
| Eco130I | CCWWGG | 7 cut(s) | 159, 3094, 7332, 7488, 8247, 9462, 9705 |
| Eco24I | GRGCYC | 9 cut(s) | 829, 2267, 3226, 3464, 4297, 5225, 8197, 8342, 9221 |
| Eco31I | GGTCTC | 4 cut(s) | 736, 1189, 1781, 4649 |
| Eco32I | GATATC | 2 cut(s) | 150, 2702 |
| Eco53kI | GAGCTC | 3 cut(s) | 2265, 3462, 8195 |
| Eco81I | CCTNAGG | 2 cut(s) | 3261, 4097 |
| Eco88I | CYCGRG | 7 cut(s) | 822, 3506, 4790, 5218, 5741, 6788, 7152 |
| Eco91I | GGTNACC | 3 cut(s) | 3404, 5068, 9694 |
| EcoICRI | GAGCTC | 3 cut(s) | 2265, 3462, 8195 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1470, 5622 |
| EcoO109I | RGGNCCY | 7 cut(s) | 1915, 3158, 3223, 4795, 5222, 7185, 7387 |
| EcoO65I | GGTNACC | 3 cut(s) | 3404, 5068, 9694 |
| EcoRI | GAATTC | 3 cut(s) | 2354, 2490, 7204 |
| EcoRV | GATATC | 2 cut(s) | 150, 2702 |
| EcoT14I | CCWWGG | 7 cut(s) | 159, 3094, 7332, 7488, 8247, 9462, 9705 |
| EcoT22I | ATGCAT | 5 cut(s) | 6033, 6472, 9100, 9460, 10126 |
| EcoT38I | GRGCYC | 9 cut(s) | 829, 2267, 3226, 3464, 4297, 5225, 8197, 8342, 9221 |
| EgeI | GGCGCC | 2 cut(s) | 5451, 5817 |
| EheI | GGCGCC | 2 cut(s) | 5451, 5817 |
| ErhI | CCWWGG | 7 cut(s) | 159, 3094, 7332, 7488, 8247, 9462, 9705 |
| Esp3I | CGTCTC | 4 cut(s) | 1053, 2348, 3262, 8712 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2498, 2530, 6737, 6769, 7988, 8020 |
| FauI | CCCGC | 1 cut(s) | 6574 |
| FauNDI | CATATG | 4 cut(s) | 932, 1573, 3328, 8651 |
| FbaI | TGATCA | 4 cut(s) | 412, 2023, 5641, 9445 |
| FriOI | GRGCYC | 9 cut(s) | 829, 2267, 3226, 3464, 4297, 5225, 8197, 8342, 9221 |
| FspI | TGCGCA | 1 cut(s) | 7747 |
| GlaI | GCGC | 7 cut(s) | 1527, 3522, 3834, 5451, 5817, 7747, 9405 |
| GsaI | CCCAGC | 3 cut(s) | 4394, 6941, 9092 |
| GsuI | CTGGAG | 5 cut(s) | 1692, 6654, 7665, 7833, 9963 |
| HaeII | RGCGCY | 3 cut(s) | 3524, 5453, 5819 |
| HgaI | GACGC | 3 cut(s) | 2287, 8729, 9890 |
| HhaI | GCGC | 7 cut(s) | 1528, 3523, 3835, 5452, 5818, 7748, 9406 |
| Hin1I | GRCGYC | 2 cut(s) | 5450, 5816 |
| Hin6I | GCGC | 7 cut(s) | 1526, 3521, 3833, 5450, 5816, 7746, 9404 |
| HinP1I | GCGC | 7 cut(s) | 1526, 3521, 3833, 5450, 5816, 7746, 9404 |
| HindIII | AAGCTT | 8 cut(s) | 79, 198, 2174, 2777, 3779, 3968, 7929, 9105 |
| HpaI | GTTAAC | 2 cut(s) | 3480, 9985 |
| Hpy99I | CGWCG | 2 cut(s) | 5799, 6381 |
| Hsp92I | GRCGYC | 2 cut(s) | 5450, 5816 |
| HspAI | GCGC | 7 cut(s) | 1526, 3521, 3833, 5450, 5816, 7746, 9404 |
| KasI | GGCGCC | 2 cut(s) | 5449, 5815 |
| KflI | GGGWCCC | 2 cut(s) | 1915, 7387 |
| Kpn2I | TCCGGA | 2 cut(s) | 3696, 7262 |
| KpnI | GGTACC | 1 cut(s) | 9479 |
| KroI | GCCGGC | 1 cut(s) | 1801 |
| KroNI | GCCGGC | 1 cut(s) | 1803 |
| Ksp22I | TGATCA | 4 cut(s) | 412, 2023, 5641, 9445 |
| KspAI | GTTAAC | 2 cut(s) | 3480, 9985 |
| LguI | GCTCTTC | 5 cut(s) | 2272, 2469, 4848, 6319, 9226 |
| MabI | ACCWGGT | 1 cut(s) | 5461 |
| MbiI | CCGCTC | 1 cut(s) | 9066 |
| MfeI | CAATTG | 2 cut(s) | 3816, 5313 |
| MflI | RGATCY | 8 cut(s) | 380, 1334, 1490, 2652, 4784, 5962, 6047, 8939 |
| MlsI | TGGCCA | 1 cut(s) | 7500 |
| MluNI | TGGCCA | 1 cut(s) | 7500 |
| Mly113I | GGCGCC | 2 cut(s) | 5450, 5816 |
| Mox20I | TGGCCA | 1 cut(s) | 7500 |
| Mph1103I | ATGCAT | 5 cut(s) | 6033, 6472, 9100, 9460, 10126 |
| MroI | TCCGGA | 2 cut(s) | 3696, 7262 |
| MroNI | GCCGGC | 1 cut(s) | 1801 |
| MscI | TGGCCA | 1 cut(s) | 7500 |
| Msp20I | TGGCCA | 1 cut(s) | 7500 |
| MspA1I | CMGCKG | 6 cut(s) | 3617, 4379, 5132, 6431, 7055, 9409 |
| MspCI | CTTAAG | 3 cut(s) | 2564, 3031, 6448 |
| MssI | GTTTAAAC | 1 cut(s) | 2560 |
| MunI | CAATTG | 2 cut(s) | 3816, 5313 |
| Mva1269I | GAATGC | 5 cut(s) | 3424, 4191, 6472, 9637, 9815 |
| MvnI | CGCG | 3 cut(s) | 3835, 4131, 5794 |
| NaeI | GCCGGC | 1 cut(s) | 1803 |
| NarI | GGCGCC | 2 cut(s) | 5450, 5816 |
| NciI | CCSGG | 2 cut(s) | 1970, 4820 |
| NcoI | CCATGG | 2 cut(s) | 159, 9705 |
| NdeI | CATATG | 4 cut(s) | 932, 1573, 3328, 8651 |
| NgoMIV | GCCGGC | 1 cut(s) | 1801 |
| NmeAIII | GCCGAG | 1 cut(s) | 3466 |
| NmuCI | GTSAC | 9 cut(s) | 459, 796, 2900, 3404, 5025, 8398, 8770, 8803, 10001 |
| NsbI | TGCGCA | 1 cut(s) | 7747 |
| NsiI | ATGCAT | 5 cut(s) | 6033, 6472, 9100, 9460, 10126 |
| NspI | RCATGY | 6 cut(s) | 1348, 2238, 4951, 6093, 7843, 7982 |
| OliI | CACNNNNGTG | 2 cut(s) | 8951, 9149 |
| PaeI | GCATGC | 2 cut(s) | 1348, 6093 |
| PaeR7I | CTCGAG | 2 cut(s) | 3506, 7152 |
| PagI | TCATGA | 4 cut(s) | 415, 6586, 7936, 8176 |
| PaqCI | CACCTGC | 4 cut(s) | 652, 2027, 5836, 7009 |
| PciI | ACATGT | 1 cut(s) | 2234 |
| PciSI | GCTCTTC | 5 cut(s) | 2272, 2469, 4848, 6319, 9226 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2344, 2632 |
| PctI | GAATGC | 5 cut(s) | 3424, 4191, 6472, 9637, 9815 |
| PdiI | GCCGGC | 1 cut(s) | 1803 |
| PflFI | GACNNNGTC | 2 cut(s) | 6342, 7147 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 647, 1058, 4745, 6874 |
| PfoI | TCCNGGA | 3 cut(s) | 1353, 6670, 7642 |
| PinAI | ACCGGT | 2 cut(s) | 2996, 6212 |
| PluTI | GGCGCC | 2 cut(s) | 5453, 5819 |
| PmeI | GTTTAAAC | 1 cut(s) | 2560 |
| Ppu21I | YACGTR | 1 cut(s) | 87 |
| PpuMI | RGGWCCY | 4 cut(s) | 1915, 3158, 7185, 7387 |
| PscI | ACATGT | 1 cut(s) | 2234 |
| PshBI | ATTAAT | 2 cut(s) | 174, 3122 |
| PsiI | TTATAA | 1 cut(s) | 3953 |
| Psp124BI | GAGCTC | 3 cut(s) | 2267, 3464, 8197 |
| Psp1406I | AACGTT | 1 cut(s) | 4810 |
| Psp5II | RGGWCCY | 4 cut(s) | 1915, 3158, 7185, 7387 |
| PspEI | GGTNACC | 3 cut(s) | 3404, 5068, 9694 |
| PspFI | CCCAGC | 3 cut(s) | 4390, 6937, 9088 |
| PspOMI | GGGCCC | 2 cut(s) | 3222, 5221 |
| PspPPI | RGGWCCY | 4 cut(s) | 1915, 3158, 7185, 7387 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4719, 4751 |
| PstI | CTGCAG | 4 cut(s) | 604, 4231, 4378, 6127 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1130, 1769, 5965, 7133, 7856 |
| PsuI | RGATCY | 8 cut(s) | 380, 1334, 1490, 2652, 4784, 5962, 6047, 8939 |
| PsyI | GACNNNGTC | 2 cut(s) | 6342, 7147 |
| PvuII | CAGCTG | 6 cut(s) | 3617, 4379, 5132, 6431, 7055, 9409 |
| Rsr2I | CGGWCCG | 1 cut(s) | 335 |
| RsrII | CGGWCCG | 1 cut(s) | 335 |
| SacI | GAGCTC | 3 cut(s) | 2267, 3464, 8197 |
| SapI | GCTCTTC | 5 cut(s) | 2272, 2469, 4848, 6319, 9226 |
| ScaI | AGTACT | 6 cut(s) | 2939, 3678, 4323, 5575, 8523, 9211 |
| SexAI | ACCWGGT | 1 cut(s) | 5461 |
| SfcI | CTRYAG | 7 cut(s) | 600, 4008, 4227, 4374, 6123, 7056, 9606 |
| SfoI | GGCGCC | 2 cut(s) | 5451, 5817 |
| Sfr274I | CTCGAG | 2 cut(s) | 3506, 7152 |
| SgrAI | CRCCGGYG | 1 cut(s) | 6212 |
| SlaI | CTCGAG | 2 cut(s) | 3506, 7152 |
| SpeI | ACTAGT | 1 cut(s) | 5282 |
| SphI | GCATGC | 2 cut(s) | 1348, 6093 |
| SspDI | GGCGCC | 2 cut(s) | 5449, 5815 |
| SspI | AATATT | 7 cut(s) | 688, 3547, 4463, 5260, 8608, 9795, 10009 |
| SstI | GAGCTC | 3 cut(s) | 2267, 3464, 8197 |
| StyI | CCWWGG | 7 cut(s) | 159, 3094, 7332, 7488, 8247, 9462, 9705 |
| TaqII | GACCGA | 1 cut(s) | 4467 |
| TseFI | GTSAC | 9 cut(s) | 459, 796, 2900, 3404, 5025, 8398, 8770, 8803, 10001 |
| Tsp45I | GTSAC | 9 cut(s) | 459, 796, 2900, 3404, 5025, 8398, 8770, 8803, 10001 |
| TspGWI | ACGGA | 2 cut(s) | 6031, 6190 |
| Tth111I | GACNNNGTC | 2 cut(s) | 6342, 7147 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 647, 1058, 4745, 6874 |
| Vha464I | CTTAAG | 3 cut(s) | 2564, 3031, 6448 |
| VneI | GTGCAC | 2 cut(s) | 3842, 7653 |
| VspI | ATTAAT | 2 cut(s) | 174, 3122 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1470, 5622 |
| XbaI | TCTAGA | 2 cut(s) | 8705, 9568 |
| XceI | RCATGY | 6 cut(s) | 1348, 2238, 4951, 6093, 7843, 7982 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 286, 7033, 7072, 9469 |
| XhoI | CTCGAG | 2 cut(s) | 3506, 7152 |
| XmaJI | CCTAGG | 1 cut(s) | 3094 |
| ZrmI | AGTACT | 6 cut(s) | 2939, 3678, 4323, 5575, 8523, 9211 |
| Zsp2I | ATGCAT | 5 cut(s) | 6033, 6472, 9100, 9460, 10126 |