Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1063 - 1225 | 6.3e-13 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1067 - 1358 | 4.9e-91 | SNF2-related domain |
| Helicase_C | PF00271 | 1384 - 1497 | 7.4e-22 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1592 - 1688 | 1.6e-16 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4136 |
| AarI | CACCTGC | 2 cut(s) | 5989, 6098 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 9745 |
| Acc16I | TGCGCA | 1 cut(s) | 10644 |
| Acc36I | ACCTGC | 3 cut(s) | 5989, 6098, 7886 |
| Acc65I | GGTACC | 1 cut(s) | 4275 |
| AccB1I | GGYRCC | 4 cut(s) | 4275, 4918, 5968, 11422 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 446, 1127, 8812 |
| AccI | GTMKAC | 2 cut(s) | 3045, 7248 |
| AccII | CGCG | 2 cut(s) | 9650, 10113 |
| AccIII | TCCGGA | 2 cut(s) | 2529, 7490 |
| AclI | AACGTT | 1 cut(s) | 10008 |
| AcoI | YGGCCR | 5 cut(s) | 393, 4489, 7095, 8796, 9566 |
| AcvI | CACGTG | 1 cut(s) | 6056 |
| AcyI | GRCGYC | 2 cut(s) | 10871, 10970 |
| AfeI | AGCGCT | 1 cut(s) | 2759 |
| AflII | CTTAAG | 2 cut(s) | 2384, 3214 |
| AflIII | ACRYGT | 5 cut(s) | 2235, 2248, 6769, 7001, 8504 |
| AgeI | ACCGGT | 1 cut(s) | 5371 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| AjiI | CACGTC | 3 cut(s) | 1874, 7004, 11383 |
| AleI | CACNNNNGTG | 1 cut(s) | 1227 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5164, 5196 |
| Alw44I | GTGCAC | 1 cut(s) | 4025 |
| Ama87I | CYCGRG | 3 cut(s) | 541, 1022, 1764 |
| Aor13HI | TCCGGA | 2 cut(s) | 2529, 7490 |
| Aor51HI | AGCGCT | 1 cut(s) | 2759 |
| ApaI | GGGCCC | 3 cut(s) | 3409, 3441, 6185 |
| ApaLI | GTGCAC | 1 cut(s) | 4025 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4004, 4036 |
| AseI | ATTAAT | 3 cut(s) | 276, 2868, 3417 |
| AsiGI | ACCGGT | 1 cut(s) | 5371 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1531, 2549, 2768, 4889, 6577, 10212 |
| Asp718I | GGTACC | 1 cut(s) | 4275 |
| AspA2I | CCTAGG | 1 cut(s) | 3277 |
| AspLEI | GCGC | 7 cut(s) | 2760, 3706, 5329, 5998, 10113, 10645, 11368 |
| AsuC2I | CCSGG | 6 cut(s) | 590, 1023, 1024, 3436, 4018, 5611 |
| AsuII | TTCGAA | 2 cut(s) | 4048, 7175 |
| AvaI | CYCGRG | 3 cut(s) | 541, 1022, 1764 |
| AvaII | GGWCC | 8 cut(s) | 418, 449, 3341, 4528, 5369, 6650, 7898, 9653 |
| AvrII | CCTAGG | 1 cut(s) | 3277 |
| AxyI | CCTNAGG | 3 cut(s) | 4280, 9477, 9801 |
| BaeGI | GKGCMC | 8 cut(s) | 1053, 3409, 3441, 4029, 6185, 9333, 11334, 11425 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 642, 675 |
| BalI | TGGCCA | 3 cut(s) | 4491, 8798, 9568 |
| BamHI | GGATCC | 4 cut(s) | 2835, 2966, 6664, 6911 |
| BanI | GGYRCC | 4 cut(s) | 4275, 4918, 5968, 11422 |
| BauI | CACGAG | 2 cut(s) | 5465, 6972 |
| BbrPI | CACGTG | 1 cut(s) | 6056 |
| BbsI | GAAGAC | 6 cut(s) | 342, 1657, 5687, 8241, 9330, 11385 |
| BceAI | ACGGC | 5 cut(s) | 1131, 2508, 3151, 5253, 5934 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 4038, 4072, 10824, 10858, 10923, 10957 |
| BciVI | GTATCC | 5 cut(s) | 2822, 5344, 6953, 7081, 8782 |
| BclI | TGATCA | 6 cut(s) | 514, 2200, 3802, 3837, 7360, 9109 |
| BcnI | CCSGG | 6 cut(s) | 590, 1023, 1024, 3436, 4018, 5611 |
| BfoI | RGCGCY | 3 cut(s) | 2761, 3707, 5330 |
| BfrI | CTTAAG | 2 cut(s) | 2384, 3214 |
| BfuAI | ACCTGC | 3 cut(s) | 5989, 6098, 7886 |
| BfuI | GTATCC | 5 cut(s) | 2822, 5344, 6953, 7081, 8782 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4861 |
| BglII | AGATCT | 2 cut(s) | 5480, 8869 |
| BlnI | CCTAGG | 1 cut(s) | 3277 |
| BlpI | GCTNAGC | 3 cut(s) | 957, 3796, 4563 |
| BmcAI | AGTACT | 2 cut(s) | 3861, 7957 |
| Bme18I | GGWCC | 8 cut(s) | 418, 449, 3341, 4528, 5369, 6650, 7898, 9653 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| BmeT110I | CYCGRG | 3 cut(s) | 541, 1022, 1764 |
| BmgBI | CACGTC | 3 cut(s) | 1874, 7004, 11383 |
| BmrI | ACTGGG | 7 cut(s) | 801, 2004, 2082, 2204, 4583, 6411, 6740 |
| BmuI | ACTGGG | 7 cut(s) | 801, 2004, 2082, 2204, 4583, 6411, 6740 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9651 |
| BpiI | GAAGAC | 6 cut(s) | 342, 1657, 5687, 8241, 9330, 11385 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 5012, 5044, 6319, 6351, 6916, 6948 |
| Bpu10I | CCTNAGC | 6 cut(s) | 2985, 5499, 8953, 10392, 11262, 11416 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 957, 3796, 4563 |
| Bpu14I | TTCGAA | 2 cut(s) | 4048, 7175 |
| BpuMI | CCSGG | 6 cut(s) | 590, 1023, 1024, 3436, 4018, 5611 |
| BsaAI | YACGTR | 2 cut(s) | 3510, 6056 |
| BsaBI | GATNNNNATC | 1 cut(s) | 6825 |
| BsaHI | GRCGYC | 2 cut(s) | 10871, 10970 |
| BsaI | GGTCTC | 2 cut(s) | 847, 10295 |
| BsaWI | WCCGGW | 6 cut(s) | 2529, 5371, 5916, 7084, 7490, 10486 |
| Bse118I | RCCGGY | 1 cut(s) | 5371 |
| Bse21I | CCTNAGG | 3 cut(s) | 4280, 9477, 9801 |
| Bse8I | GATNNNNATC | 1 cut(s) | 6825 |
| BseAI | TCCGGA | 2 cut(s) | 2529, 7490 |
| BseJI | GATNNNNATC | 1 cut(s) | 6825 |
| BseSI | GKGCMC | 8 cut(s) | 1053, 3409, 3441, 4029, 6185, 9333, 11334, 11425 |
| BseYI | CCCAGC | 3 cut(s) | 2146, 2281, 6634 |
| Bsh1236I | CGCG | 2 cut(s) | 9650, 10113 |
| BshNI | GGYRCC | 4 cut(s) | 4275, 4918, 5968, 11422 |
| BshTI | ACCGGT | 1 cut(s) | 5371 |
| BsiHKCI | CYCGRG | 3 cut(s) | 541, 1022, 1764 |
| BslFI | GGGAC | 9 cut(s) | 547, 605, 1058, 4992, 5068, 5831, 6951, 7600, 9574 |
| BsmBI | CGTCTC | 8 cut(s) | 2531, 3854, 8156, 10488, 10680, 10878, 10977, 11306 |
| BsmFI | GGGAC | 9 cut(s) | 547, 605, 1058, 4992, 5068, 5831, 6951, 7600, 9574 |
| BsmI | GAATGC | 8 cut(s) | 318, 1205, 3607, 4374, 7183, 7409, 7668, 8884 |
| Bso31I | GGTCTC | 2 cut(s) | 847, 10295 |
| BsoBI | CYCGRG | 3 cut(s) | 541, 1022, 1764 |
| Bsp119I | TTCGAA | 2 cut(s) | 4048, 7175 |
| Bsp120I | GGGCCC | 3 cut(s) | 3405, 3437, 6181 |
| Bsp13I | TCCGGA | 2 cut(s) | 2529, 7490 |
| Bsp1407I | TGTACA | 3 cut(s) | 3234, 4816, 8695 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 957, 3796, 4563 |
| Bsp19I | CCATGG | 7 cut(s) | 261, 1257, 6177, 6429, 7383, 7716, 9132 |
| BspEI | TCCGGA | 2 cut(s) | 2529, 7490 |
| BspFNI | CGCG | 2 cut(s) | 9650, 10113 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspMAI | CTGCAG | 5 cut(s) | 4414, 4561, 5314, 5749, 9021 |
| BspMI | ACCTGC | 3 cut(s) | 5989, 6098, 7886 |
| BspQI | GCTCTTC | 2 cut(s) | 5031, 6357 |
| BspT104I | TTCGAA | 2 cut(s) | 4048, 7175 |
| BspT107I | GGYRCC | 4 cut(s) | 4275, 4918, 5968, 11422 |
| BspTI | CTTAAG | 2 cut(s) | 2384, 3214 |
| BspTNI | GGTCTC | 2 cut(s) | 847, 10295 |
| BsrFI | RCCGGY | 1 cut(s) | 5371 |
| BsrGI | TGTACA | 3 cut(s) | 3234, 4816, 8695 |
| BssAI | RCCGGY | 1 cut(s) | 5371 |
| BssNI | GRCGYC | 2 cut(s) | 10871, 10970 |
| BssSI | CACGAG | 2 cut(s) | 5465, 6972 |
| Bst2BI | CACGAG | 2 cut(s) | 5465, 6972 |
| Bst6I | CTCTTC | 9 cut(s) | 635, 3968, 4490, 4633, 5031, 5046, 5490, 6357, 9778 |
| BstACI | GRCGYC | 2 cut(s) | 10871, 10970 |
| BstAFI | CTTAAG | 2 cut(s) | 2384, 3214 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4123, 5981 |
| BstAUI | TGTACA | 3 cut(s) | 3234, 4816, 8695 |
| BstBAI | YACGTR | 2 cut(s) | 3510, 6056 |
| BstBI | TTCGAA | 2 cut(s) | 4048, 7175 |
| BstDSI | CCRYGG | 8 cut(s) | 261, 1257, 5269, 6177, 6429, 7383, 7716, 9132 |
| BstEII | GGTNACC | 3 cut(s) | 3953, 5245, 7537 |
| BstENI | CCTNNNNNAGG | 5 cut(s) | 1131, 1542, 1860, 6189, 6212 |
| BstFNI | CGCG | 2 cut(s) | 9650, 10113 |
| BstH2I | RGCGCY | 3 cut(s) | 2761, 3707, 5330 |
| BstHHI | GCGC | 7 cut(s) | 2760, 3706, 5329, 5998, 10113, 10645, 11368 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9651 |
| BstPI | GGTNACC | 3 cut(s) | 3953, 5245, 7537 |
| BstSLI | GKGCMC | 8 cut(s) | 1053, 3409, 3441, 4029, 6185, 9333, 11334, 11425 |
| BstSNI | TACGTA | 1 cut(s) | 3510 |
| BstUI | CGCG | 2 cut(s) | 9650, 10113 |
| BstV2I | GAAGAC | 6 cut(s) | 342, 1657, 5687, 8241, 9330, 11385 |
| BstX2I | RGATCY | 8 cut(s) | 482, 2835, 2966, 5480, 6664, 6911, 7295, 8869 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 2105, 3209, 6550, 10519, 10711, 11341 |
| BstYI | RGATCY | 8 cut(s) | 482, 2835, 2966, 5480, 6664, 6911, 7295, 8869 |
| Bsu36I | CCTNAGG | 3 cut(s) | 4280, 9477, 9801 |
| BsuI | GTATCC | 5 cut(s) | 2822, 5344, 6953, 7081, 8782 |
| BtgI | CCRYGG | 8 cut(s) | 261, 1257, 5269, 6177, 6429, 7383, 7716, 9132 |
| BtgZI | GCGATG | 4 cut(s) | 3575, 4916, 10485, 10677 |
| BtrI | CACGTC | 3 cut(s) | 1874, 7004, 11383 |
| BtsI | GCAGTG | 5 cut(s) | 4738, 7203, 9014, 9145, 11216 |
| BveI | ACCTGC | 3 cut(s) | 5989, 6098, 7886 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 7 cut(s) | 2760, 3706, 5329, 5998, 10113, 10645, 11368 |
| Cfr10I | RCCGGY | 1 cut(s) | 5371 |
| Cfr9I | CCCGGG | 1 cut(s) | 1022 |
| CseI | GACGC | 8 cut(s) | 7170, 8871, 9383, 9656, 9788, 10662, 10860, 10959 |
| CsiI | ACCWGGT | 2 cut(s) | 597, 757 |
| CspAI | ACCGGT | 1 cut(s) | 5371 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5824, 5859 |
| DraI | TTTAAA | 2 cut(s) | 4713, 5775 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 9745 |
| DriI | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 9745 |
| EaeI | YGGCCR | 5 cut(s) | 393, 4489, 7095, 8796, 9566 |
| Eam1104I | CTCTTC | 9 cut(s) | 635, 3968, 4490, 4633, 5031, 5046, 5490, 6357, 9778 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| EarI | CTCTTC | 9 cut(s) | 635, 3968, 4490, 4633, 5031, 5046, 5490, 6357, 9778 |
| Ecl136II | GAGCTC | 5 cut(s) | 338, 2448, 2491, 5942, 11261 |
| Eco105I | TACGTA | 1 cut(s) | 3510 |
| Eco31I | GGTCTC | 2 cut(s) | 847, 10295 |
| Eco32I | GATATC | 2 cut(s) | 252, 8061 |
| Eco47I | GGWCC | 8 cut(s) | 418, 449, 3341, 4528, 5369, 6650, 7898, 9653 |
| Eco47III | AGCGCT | 1 cut(s) | 2759 |
| Eco53kI | GAGCTC | 5 cut(s) | 338, 2448, 2491, 5942, 11261 |
| Eco72I | CACGTG | 1 cut(s) | 6056 |
| Eco81I | CCTNAGG | 3 cut(s) | 4280, 9477, 9801 |
| Eco88I | CYCGRG | 3 cut(s) | 541, 1022, 1764 |
| Eco91I | GGTNACC | 3 cut(s) | 3953, 5245, 7537 |
| EcoICRI | GAGCTC | 5 cut(s) | 338, 2448, 2491, 5942, 11261 |
| EcoNI | CCTNNNNNAGG | 5 cut(s) | 1131, 1542, 1860, 6189, 6212 |
| EcoO109I | RGGNCCY | 8 cut(s) | 3341, 3406, 3438, 6182, 7421, 7898, 9170, 9653 |
| EcoO65I | GGTNACC | 3 cut(s) | 3953, 5245, 7537 |
| EcoRI | GAATTC | 4 cut(s) | 2673, 2693, 8276, 9058 |
| EcoRV | GATATC | 2 cut(s) | 252, 8061 |
| EcoT22I | ATGCAT | 2 cut(s) | 7993, 8920 |
| Esp3I | CGTCTC | 8 cut(s) | 2531, 3854, 8156, 10488, 10680, 10878, 10977, 11306 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1348, 1380, 2681, 2713, 3086, 3118 |
| FaqI | GGGAC | 9 cut(s) | 547, 605, 1058, 4992, 5068, 5831, 6951, 7600, 9574 |
| FauI | CCCGC | 5 cut(s) | 175, 5004, 5846, 5954, 9643 |
| FauNDI | CATATG | 1 cut(s) | 5032 |
| FbaI | TGATCA | 6 cut(s) | 514, 2200, 3802, 3837, 7360, 9109 |
| FblI | GTMKAC | 2 cut(s) | 3045, 7248 |
| FspI | TGCGCA | 1 cut(s) | 10644 |
| GlaI | GCGC | 7 cut(s) | 2759, 3705, 5328, 5997, 10112, 10644, 11367 |
| GsaI | CCCAGC | 3 cut(s) | 2150, 2285, 6638 |
| HaeII | RGCGCY | 3 cut(s) | 2761, 3707, 5330 |
| HgaI | GACGC | 8 cut(s) | 7170, 8871, 9383, 9656, 9788, 10662, 10860, 10959 |
| HhaI | GCGC | 7 cut(s) | 2760, 3706, 5329, 5998, 10113, 10645, 11368 |
| Hin1I | GRCGYC | 2 cut(s) | 10871, 10970 |
| Hin6I | GCGC | 7 cut(s) | 2758, 3704, 5327, 5996, 10111, 10643, 11366 |
| HinP1I | GCGC | 7 cut(s) | 2758, 3704, 5327, 5996, 10111, 10643, 11366 |
| HincII | GTYRAC | 8 cut(s) | 1113, 1582, 1888, 3663, 6142, 7969, 9129, 10807 |
| HindII | GTYRAC | 8 cut(s) | 1113, 1582, 1888, 3663, 6142, 7969, 9129, 10807 |
| HindIII | AAGCTT | 4 cut(s) | 2960, 3962, 4151, 9543 |
| HpaI | GTTAAC | 5 cut(s) | 1888, 3663, 6142, 7969, 10807 |
| Hpy99I | CGWCG | 2 cut(s) | 6606, 11411 |
| Hsp92I | GRCGYC | 2 cut(s) | 10871, 10970 |
| HspAI | GCGC | 7 cut(s) | 2758, 3704, 5327, 5996, 10111, 10643, 11366 |
| Kpn2I | TCCGGA | 2 cut(s) | 2529, 7490 |
| KpnI | GGTACC | 1 cut(s) | 4279 |
| Ksp22I | TGATCA | 6 cut(s) | 514, 2200, 3802, 3837, 7360, 9109 |
| KspAI | GTTAAC | 5 cut(s) | 1888, 3663, 6142, 7969, 10807 |
| LguI | GCTCTTC | 2 cut(s) | 5031, 6357 |
| MabI | ACCWGGT | 2 cut(s) | 597, 757 |
| MfeI | CAATTG | 3 cut(s) | 2190, 5531, 6894 |
| MflI | RGATCY | 8 cut(s) | 482, 2835, 2966, 5480, 6664, 6911, 7295, 8869 |
| MlsI | TGGCCA | 3 cut(s) | 4491, 8798, 9568 |
| MluNI | TGGCCA | 3 cut(s) | 4491, 8798, 9568 |
| Mox20I | TGGCCA | 3 cut(s) | 4491, 8798, 9568 |
| Mph1103I | ATGCAT | 2 cut(s) | 7993, 8920 |
| MroI | TCCGGA | 2 cut(s) | 2529, 7490 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1531, 2549, 2768, 4889, 6577, 10212 |
| MscI | TGGCCA | 3 cut(s) | 4491, 8798, 9568 |
| Msp20I | TGGCCA | 3 cut(s) | 4491, 8798, 9568 |
| MspA1I | CMGCKG | 7 cut(s) | 1989, 3800, 4562, 6290, 6638, 7304, 9041 |
| MspCI | CTTAAG | 2 cut(s) | 2384, 3214 |
| MunI | CAATTG | 3 cut(s) | 2190, 5531, 6894 |
| Mva1269I | GAATGC | 8 cut(s) | 318, 1205, 3607, 4374, 7183, 7409, 7668, 8884 |
| MvnI | CGCG | 2 cut(s) | 9650, 10113 |
| NciI | CCSGG | 6 cut(s) | 590, 1023, 1024, 3436, 4018, 5611 |
| NcoI | CCATGG | 7 cut(s) | 261, 1257, 6177, 6429, 7383, 7716, 9132 |
| NdeI | CATATG | 1 cut(s) | 5032 |
| NmeAIII | GCCGAG | 1 cut(s) | 4840 |
| NsbI | TGCGCA | 1 cut(s) | 10644 |
| NsiI | ATGCAT | 2 cut(s) | 7993, 8920 |
| NspV | TTCGAA | 2 cut(s) | 4048, 7175 |
| OliI | CACNNNNGTG | 1 cut(s) | 1227 |
| PaeI | GCATGC | 2 cut(s) | 968, 1420 |
| PaeR7I | CTCGAG | 2 cut(s) | 541, 1764 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PaqCI | CACCTGC | 2 cut(s) | 5989, 6098 |
| PciI | ACATGT | 4 cut(s) | 2235, 2248, 6769, 8504 |
| PciSI | GCTCTTC | 2 cut(s) | 5031, 6357 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2815 |
| PctI | GAATGC | 8 cut(s) | 318, 1205, 3607, 4374, 7183, 7409, 7668, 8884 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1531, 2549, 2768, 4889, 6577, 10212 |
| PflFI | GACNNNGTC | 1 cut(s) | 9616 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 446, 1127, 8812 |
| PfoI | TCCNGGA | 1 cut(s) | 1126 |
| PinAI | ACCGGT | 1 cut(s) | 5371 |
| PmaCI | CACGTG | 1 cut(s) | 6056 |
| PmlI | CACGTG | 1 cut(s) | 6056 |
| Ppu21I | YACGTR | 2 cut(s) | 3510, 6056 |
| PpuMI | RGGWCCY | 3 cut(s) | 3341, 7898, 9653 |
| PscI | ACATGT | 4 cut(s) | 2235, 2248, 6769, 8504 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9651 |
| PshBI | ATTAAT | 3 cut(s) | 276, 2868, 3417 |
| PsiI | TTATAA | 1 cut(s) | 4136 |
| Psp124BI | GAGCTC | 5 cut(s) | 340, 2450, 2493, 5944, 11263 |
| Psp1406I | AACGTT | 1 cut(s) | 10008 |
| Psp5II | RGGWCCY | 3 cut(s) | 3341, 7898, 9653 |
| PspCI | CACGTG | 1 cut(s) | 6056 |
| PspEI | GGTNACC | 3 cut(s) | 3953, 5245, 7537 |
| PspFI | CCCAGC | 3 cut(s) | 2146, 2281, 6634 |
| PspOMI | GGGCCC | 3 cut(s) | 3405, 3437, 6181 |
| PspPPI | RGGWCCY | 3 cut(s) | 3341, 7898, 9653 |
| PspXI | VCTCGAGB | 1 cut(s) | 541 |
| PstI | CTGCAG | 5 cut(s) | 4414, 4561, 5314, 5749, 9021 |
| PsuI | RGATCY | 8 cut(s) | 482, 2835, 2966, 5480, 6664, 6911, 7295, 8869 |
| PsyI | GACNNNGTC | 1 cut(s) | 9616 |
| PvuII | CAGCTG | 7 cut(s) | 1989, 3800, 4562, 6290, 6638, 7304, 9041 |
| SacI | GAGCTC | 5 cut(s) | 340, 2450, 2493, 5944, 11263 |
| SapI | GCTCTTC | 2 cut(s) | 5031, 6357 |
| ScaI | AGTACT | 2 cut(s) | 3861, 7957 |
| SexAI | ACCWGGT | 2 cut(s) | 597, 757 |
| Sfr274I | CTCGAG | 2 cut(s) | 541, 1764 |
| SfuI | TTCGAA | 2 cut(s) | 4048, 7175 |
| SinI | GGWCC | 8 cut(s) | 418, 449, 3341, 4528, 5369, 6650, 7898, 9653 |
| SlaI | CTCGAG | 2 cut(s) | 541, 1764 |
| SmaI | CCCGGG | 1 cut(s) | 1024 |
| SnaBI | TACGTA | 1 cut(s) | 3510 |
| SphI | GCATGC | 2 cut(s) | 968, 1420 |
| SspI | AATATT | 3 cut(s) | 2116, 4428, 4646 |
| SstI | GAGCTC | 5 cut(s) | 340, 2450, 2493, 5944, 11263 |
| TaqII | GACCGA | 1 cut(s) | 4182 |
| TatI | WGTACW | 8 cut(s) | 458, 2313, 3234, 3859, 4816, 7955, 8215, 8695 |
| TspGWI | ACGGA | 9 cut(s) | 87, 2585, 4451, 5063, 5497, 5685, 9437, 9935, 10792 |
| TspMI | CCCGGG | 1 cut(s) | 1022 |
| Tth111I | GACNNNGTC | 1 cut(s) | 9616 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 446, 1127, 8812 |
| Vha464I | CTTAAG | 2 cut(s) | 2384, 3214 |
| VneI | GTGCAC | 1 cut(s) | 4025 |
| VpaK11BI | GGWCC | 8 cut(s) | 418, 449, 3341, 4528, 5369, 6650, 7898, 9653 |
| VspI | ATTAAT | 3 cut(s) | 276, 2868, 3417 |
| XagI | CCTNNNNNAGG | 5 cut(s) | 1131, 1542, 1860, 6189, 6212 |
| XbaI | TCTAGA | 3 cut(s) | 1367, 2162, 9676 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 388 |
| XhoI | CTCGAG | 2 cut(s) | 541, 1764 |
| XmaI | CCCGGG | 1 cut(s) | 1022 |
| XmaJI | CCTAGG | 1 cut(s) | 3277 |
| XmiI | GTMKAC | 2 cut(s) | 3045, 7248 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1531, 2549, 2768, 4889, 6577, 10212 |
| ZrmI | AGTACT | 2 cut(s) | 3861, 7957 |
| Zsp2I | ATGCAT | 2 cut(s) | 7993, 8920 |