RchiOBHm_Chr4g0420741
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001231
Physical Location & Seq
Reverse (-)
46476873 .. 46492601
15729 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39046

Sequence Viewer

Length: 6258 bp
ATGGCAGCTCCGTCACATAATGTTGAGTTGGAAGCAGCCAAGTTTCTGCACAAGCTCATTCAGGATTCTACCGATGAGCCCGCCAAACTTGCCACCAAGCTCTATGTGATACTGCAACACATGAAGTCGAGTGGCAAGGAACATTCCATGCCCTATCAAGTGATATCAAGGGCCATGGAGACTGTTATTAATCAACATGGCCTTGATATTGAGGCTTTGAAGTCATCACGCATTCCTTTGTCTGGTGGAGCTCAAACAGGGTCTTCTCATACTGCTGGAGTTGCAAAAGATTCCAATACGGGCTTGGCCGAAACTGAGGTGTCAAAGATGGACCCATTTTCTTCAAGCAGACCACCTGTTGGACCTATCAGTACAGGGCATGACTATTATCAAGGATCTGCAACTCATCGAAGTAGTCAGTCTTTTGATCATGAAAGTCCATCTAGTTTAGACTCGAGGTCTGCCAATTCCCAGTCCCAAGAAAGGCGTGATACAGCAAACCGGGACAACCAGGTGAATCGAAAGGATGGTAAAAAAGCCACCACTAAGAGGAAGAGGGGAGAGACTTCTGTACCCACAGAATCACAACTTGACAGCCCTCAAAATCTTGATACTATAGACAGTGTGGTTAATACGAGGAAGGGAAAGATGAGCAAAGGTGAACTGCCACCTGGTTTTTCAATTAAAGGTGGTGAAAATGCTAATTTTAATATCGTTCCCAGTAGTGGTCAAATGGAGCACTTTACTTCACCATCTGGAAGCATGAGACCAATGGTTAGAGTCAAGCAAGAAGGGCAACATTTAATAGAAAGGCAGGACTTGACCAACAGTAGCAATATGGAAGTTTCCTCTATTCAAAACGCTTCAGCTCAGCAGCATGCTGCTTCCCTACCTCCTACAAATGACATTATGGGTGTGTGGAGTCAAAACAAACCCGGGTTTCCTTATGAAAAGTCTCAAGTGCCCAGGTTTTCTTCCAATGTTGTCCCAGGAAATGTGACAGCAGAAAGTCCAATGCAGCAGTCAACAGCTCCATCTCCTGGATCAGGTTCTTTTGGCAAGATTCAAGGAGGTGTGCCTGGTTCTTCAAGTTCATATCAAGTAGCAGAACCACCAGCATTCTCAAGTCCAATGCACTATGGTGGCACATTGCCCTCAACTGGAAAGGCCATGGAGCTTGATGGAGGAAATACTAATCTGCTATCTGATGCAAATAAAACAGTGCAGGCTGGCAGGCAAAATAATGCAGCAGAAATGAGTGTGGTGAGAAGTGCAGCTTCTAGAGATACTGGTAAATCTCCAGTTCATGTGGCCTCTGCATCTTCTGGCATGCCTTTCAAGGAACAGCAGTTGAAACAGCTCAGAGCACAGTGCCTTGTCTTTTTAGCCTTCAGAAATGGTTTGCTGCCAAAGAAACTTCATCTTGAAATTGCACTCGGAAATACTTCACCTAAAGAAGGTGGCAATACAGATGGGCCTCGAAAAGATTTTGTTGACCATAAAGGAAAAGCACAATCTTCAAATGAGCCAAATAACAATTCTGATGCTAGTATGCCATTTGGAAGACTTAACCATGAAACTGATAAAAGTGCAGTCTCCAGTGGGAAACTCTTGGAGACTGACACCTTGGCAAAAGAATCCGAGAGCCTAAATATGGAGGTAAGTAATGGCCCACCTCGAGATCAGTTTTTGCAGAAAGCAGAAGCTGAAACACAACCTCAAGAGACTACAGCTTCACTGGCATGTTTAACTGTGGCATCACAGCAGCCTGACTCAGGTGCAAGACGTGGTTTAACTGTTAACCCTGTGGAAAATATAGAAACTGGACATTTGCAAGTTGTACGGGCTAACACAGCCTCTGCTCTAATGGGTATGAACAAGCAGAACTCTGATATAAGCAGCTGGACTGGGTTTGGGAGTCAAAGTGAAGTTTCCAGAGGACTGTTACCTCCTTCTGCCGGTCAGTCTGAGATTGTTCCTGAAAGAAAAGATACCGCTCCCAGTCAGTTCCAAACTCATGGTAACAATATTTTGGGGAATCAACATACTGCCAATCACCCAGCTTCTTTTGCATCTAGAGATCGTTGGAAACCAGTATCCGCAATTGGCAATGATCATCACCCAGTAGTTGCATCAAAGGATGCTCACATGTTGCAAAAACATGTTTCCAAAGAACAAGTAAAGGAGAATAACCCAGCTTCTGTTGATTTTCCACCTTCACCAAAGTACACAATGTCAGAGAAGTGGATTATGGATAAGCAGAAAAAGAAGCTCCTAGATGAACAAACTTGGACTCTTAAGCATCAAAAAGCAAGGGCAAAAATTGTGACATCTTTTCACAAGTTAAAGGAAAATGTGAGCTCCTCTGAAGATATATCTGCGAAAACCAAAAGTGTTATAGAGCTCAAAAAACTACAACTCTTGGAATTGCAACGCCGTCTCCGGAGTGAATTTTTGAATGATTTCTTCAAACCAATCAATACGGAGATGGATCGCTTGAAATCTTTTAAGAAACATAGACATGGCAGGAGGATAAAACAACTTGAAAAGTTTGAGCAAAAGATGAAGGAAGAAAGACAAAAGAGAATTCAGCAAAGACAAAAGGAATTCTTTGGGGAGTTAGAGATTCACAAGGAAAGACTGGATGATGCCTTCAAAATTAAGAGAGAGCGCTGGAAAGGTTTCAATAAATATGTAAAGGAGTTCCACAAAAGGAAGGAACGTATCCATCGTGAGAAGATTGATAGGATCCAACGTGAAAAGATAAACCTGTTGAAGATTAATGATGTGGAGGGTTATTTACGAATGGTGCAGGATGCCAAATCAGACCGTGTTAAGCAGCTTCTCAAAGAGACAGAAAAATATCTTCAAAAGCTTGGATCCAAGCTACAAGATGCTAAGGCTTTGGCAAGTAGGTTTGAGCATGATATGGACGAAAGTGGAAATGCAAGTGTTGTAGACAAGAGTGAACCTAGTTTGGAAAATGAAGATGAAAGTGACCAGGCGAAGCATTACTTGGAGAGCAATGAGAAATACTATTTGATGGCTCATAGTATAAAGGAGAACATTGCAGAGCAGCCGTCTTATGTTCAGGGTGGGAAATTGAGAGAGTACCAAATGAATGGCTTAAGGTGGTTGGTGTCACTGTACAACAATCATTTGAATGGTATTCTTGCTGATGAAATGGGCCTAGGTAAAACTGTTCAGGTTATATCTTTAATCTGTTACCTGATGGAAGCAAAAAATGATCGAGGACCTTTTCTAGTGGTTGTGCCTTCTTCGGTTTTACCAGGATGGGAAACAGAAATTAACTTTTGGGCCCCTACTATTAATAGGATTGTTTATTCCGGGCCCCCAGAGGAGAGGCGTAGGCTATTTAAGGAAAGAATAGTTCAACAGAAATTTAATGTCCTCCTTACTACGTATGAGTATCTGATGAATAAGCATGACAGACCTAAGCTGAGCAAAATCCACTGGCATTATATAATAATTGATGAAGGCCATCGCATAAAGAATGCTTCCTGCAAGTTAAATGCTGACTTGAAGCATTATCAGAGTTCTCACAGATTGCTGTTAACTGGAACTCCACTACAGAATAATCTTGAGGAGTTGTGGGCGCTACTAAACTTCTTGTTGCCTAATATATTTAATTCATCTGAAGATTTTTCTCAGTGGTTCAACAAACCATTTGAAAGTAGTGGTGATAGCTCAGCTGATCAAGCCTTATTATCTGAGGAGGAGAATCTATTGATCATAAACCGTCTCCACCAAGTACTTCGACCTTTTGTCCTTCGGAGGCTGAAGCATAAGGTTGAGAATGAACTACCCGAAAAGATTGAGAGACTTGTAAGATGCGAGGCTTCTGGTTACCAGAAGCTTTTGATGAAGAGGGTAGAGGAAAATCTGGGTTCAATTACTAATTCAAAGGCCCGGTCAGTGCACAACTCTGTTATGGAGCTTCGAAATATATGCAATCATCCATATCTCAGCCAGCTTCATGTAGAGGAGATTGATAACTTAATACCAAAGCACTATCTGCCACCAATTATAAGGCTTTGTGGGAAGCTTGAGATGTTAGACCGATTACTTCCCAAGCTAAAAGCAACAGATCATAGGGTTCTTTTCTTTTCCACAATGACTAGGCTACTTGATGTCATGGAGGAATATCTCAGCTTTAAGCAGTATCGGTACCTTAGGTTGGATGGACATACATCTGGTAGTGATCGTGGTTCCCTTATTGATAATTTCAATAAACCAGATTCTCCCTTTTTCATATTTCTTCTCAGCATTCGGGCTGGTGGTGTTGGTGTAAATCTTCAAGCTGCAGATACGGTGATAATATTTGACACGGACTGGAATCCACAGGTTGATTTGCAAGCACAGGCAAGGGCTCATAGACTTGGCCAGAAGAGGGATGTTCTTGTTCTTCGATTTGAAACGGTCCAAACTGTTGAAGAACAAGTCAGAGCTGCAGCTGAGCACAAACTGGGAGTTGCTAATCAGAGCATTACTGCTGGTTTCTTTGACAACAATACAAGTGCGGAAGATCGAAGAGAATATTTGGAGTCACTTTTGCGTGAGAATAAGAAAGAGGAAGCTGCACCTGTATTGGATGATGATGCTTTAAATGATCTCTTAGCTCGCAGTGAGTCAGAAATTGATGTCTTTGAATCAGTGGACAAAAGAAGGCGAGAGGAAGAAATGGCATCATGGAGGAAGTTAGCATGTGTACAAGGGAAGGATGGTTTTGAATCTCTGCCTCCCTTGCCTTCTCGGCTTGTGACAGAGGATGACTTGAAGGAGTTCTATGAAGCGATGAAGATATATGAGGTGCCAAAGACAGGTGTAGTTTCTAATGTTGGGATAAAGCGGAAGGGTCAGTCTCTGGGGGGACTTGATACTCAACGATATGGAAGGGGAAAGCGGGCTAGAGAGGTTCGCTCATATGAAGAGCAATGGACGGAAGAGGAATTTGAAAAGTTGTGTCAGGCTGAGTCCCCTGATTCCCCTGAAAAAGCAAAGGAAGAAATTACAGAGTTAAACTTACCGAAAGATGAAAGTGGCTCCGTGGTGGCTGTTAGTAGAACTGAACTTCCTGCTCCACCTCCACCAGACTTACCACTACCATCTGTTGAGCTGCCACAACAAAGTAAAGAGGTAACCCCACCAGCTAAACGAGGCCGTGGCAGGCCAAAAAGAGCAACAGTAGATCAATCACCAACTGCAGTTGTTCATACAGCGCCTGTTGGAACAGTCAAAGTGGATACAGGGTTAGAGATAGGACCGGTGACTAGCTGTGTAACAAACTCAGCCCCAGATTCAGTACCTGATTCTGGTGAAATTGAGGGTATTGGTGGAGTTGCAGGAAGTACCGATCTCGTGGCCTCACCTAGATCTCATCCAACAGCTCCTAAGCCTTCCGTTTCTGTTACTCCTCCCTCCCAATTGACTACTATTAGCCCTTCTGCACCCACACAAGTAAGAGGAAAGGGTCGGAAAACTAAGAGTGGACAGGAAGCACCCCGGCGTAGGGGAAAGAAACAGGTGGAAATATCTCCTGGTTCTGATTCAAAACAAATTGAGCTTTCACAGAAGACATCTGTTGATCCGTTGGAAAATGAAACCATTGGCATGAGTGAAACTGTTTCTACTGTTTCTGCAGCCCAGAGTCCTGCTTCTGGTGCTTTAAAAGGTGCAGAAGGGGCCGATCATCAATCTGGCATTGTAATGGTTTTGAGTTCTCAGTCCACCCGCCTTGTCCCTGCTGTTGCTCCTTTATCTGAACCTTCCCCTTCCCCTACTGTACCAGTGAAAATGAAACCACAAAACCGGATGGCTCAAAGTGGTGTTGGAGCTCCCCGCCGGAGGGGGAAGAAACAGGTGCCAGCATCACCTGCTGTTACTGATACGCTGGTTGGCCCTGATTCGACACCAAATATGCTTCCACTGGATAAATCAGGGGATTCACGTGGGAGCAAAGACATAGACATGAGAAGTAAGCAAGAGGCTGATGTTTTAGCAGGTGAGGATATAAATTCAACTCCAAATTCAGTTAACTTGGCCCAAGTTAAGCAGACTACAAACTCATCCATGGGCCCTGCATCAGGAGAAAGTCCAAACCTAAAAGAGGCTTTGCCTGAAAATTGCTCATCCAAACCTAAGAATGACAAGATTTCAGGAGATGAAGGTTCTACCACACCAGCTGCTGTATCAAATGAGACCATTTCAGAGTTCTACTCCCATGGAAAGCACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

2085

Amino Acids

231.1

Weight (kDa)

8.58

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 1034 - 1196 4.2e-13 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 1038 - 1329 3.1e-91 SNF2-related domain
Helicase_C PF00271 1355 - 1468 3.7e-22 Helicase conserved C-terminal domain
SnAC PF14619 1563 - 1659 6.1e-17 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4049
AarI CACCTGC 2 cut(s) 5902, 6011
Acc36I ACCTGC 2 cut(s) 5902, 6011
Acc65I GGTACC 1 cut(s) 4188
AccB1I GGYRCC 3 cut(s) 4188, 4831, 5881
AccB7I CCANNNNNTGG 2 cut(s) 359, 1040
AccBSI CCGCTC 1 cut(s) 1997
AccI GTMKAC 1 cut(s) 2958
AccIII TCCGGA 1 cut(s) 2442
AciI CCGC 8 cut(s) 81, 1995, 2100, 4541, 4870, 4924, 5752, 5860
AclWI GGATC 8 cut(s) 403, 1051, 2499, 2743, 2756, 2874, 2887, 5600
AcoI YGGCCR 2 cut(s) 306, 4402
AcsI RAATTY 7 cut(s) 2450, 2586, 2606, 3401, 4970, 6034, 6046
AcuI CTGAAG 5 cut(s) 849, 1375, 2388, 3678, 3821
AcvI CACGTG 1 cut(s) 5969
AfeI AGCGCT 1 cut(s) 2672
AflII CTTAAG 2 cut(s) 2297, 3127
AflIII ACRYGT 2 cut(s) 2148, 2161
AgeI ACCGGT 1 cut(s) 5284
AhdI GACNNNNNGTC 2 cut(s) 457, 3785
AjiI CACGTC 1 cut(s) 1787
AjnI CCWGG 9 cut(s) 510, 670, 965, 988, 1039, 1078, 3000, 3289, 5557
AjuI GAANNNNNNNTTGG 4 cut(s) 1522, 1554, 2999, 3031
AleI CACNNNNGTG 1 cut(s) 1140
AloI GAACNNNNNNTCC 2 cut(s) 5077, 5109
Alw21I GWGCWC 8 cut(s) 253, 741, 1369, 2363, 2406, 3942, 4482, 5857
Alw44I GTGCAC 1 cut(s) 3938
AlwI GGATC 8 cut(s) 403, 1051, 2499, 2743, 2756, 2874, 2887, 5600
AlwNI CAGNNNCTG 7 cut(s) 1706, 1859, 2201, 4885, 5243, 5327, 6206
Ama87I CYCGRG 3 cut(s) 454, 935, 1677
Aor13HI TCCGGA 1 cut(s) 2442
Aor51HI AGCGCT 1 cut(s) 2672
ApaI GGGCCC 3 cut(s) 3322, 3354, 6098
ApaLI GTGCAC 1 cut(s) 3938
ApoI RAATTY 7 cut(s) 2450, 2586, 2606, 3401, 4970, 6034, 6046
ArsI GACNNNNNNTTYG 2 cut(s) 3917, 3949
AseI ATTAAT 3 cut(s) 189, 2781, 3330
AsiGI ACCGGT 1 cut(s) 5284
Asp700I GAANNNNTTC 4 cut(s) 1444, 2462, 2681, 4802
Asp718I GGTACC 1 cut(s) 4188
AspA2I CCTAGG 1 cut(s) 3190
AspLEI GCGC 3 cut(s) 2673, 3619, 5242
AsuC2I CCSGG 6 cut(s) 503, 936, 937, 3349, 3931, 5524
AsuII TTCGAA 1 cut(s) 3961
AvaI CYCGRG 3 cut(s) 454, 935, 1677
AvaII GGWCC 5 cut(s) 331, 362, 3254, 4441, 5282
AvrII CCTAGG 1 cut(s) 3190
AxyI CCTNAGG 1 cut(s) 4193
BaeGI GKGCMC 5 cut(s) 966, 3322, 3354, 3942, 6098
BaeI ACNNNNGTAYC 4 cut(s) 555, 588, 5898, 5931
BalI TGGCCA 1 cut(s) 4404
BamHI GGATCC 2 cut(s) 2748, 2879
BanI GGYRCC 3 cut(s) 4188, 4831, 5881
BanII GRGCYC 9 cut(s) 81, 253, 2363, 2406, 3322, 3354, 4393, 5857, 6098
BauI CACGAG 1 cut(s) 5378
BbrPI CACGTG 1 cut(s) 5969
BbsI GAAGAC 3 cut(s) 255, 1570, 5600
Bbv12I GWGCWC 8 cut(s) 253, 741, 1369, 2363, 2406, 3942, 4482, 5857
BceAI ACGGC 3 cut(s) 2421, 3064, 5166
BcgI CGANNNNNNTGC 2 cut(s) 3951, 3985
BciT130I CCWGG 9 cut(s) 512, 672, 967, 990, 1041, 1080, 3002, 3291, 5559
BciVI GTATCC 3 cut(s) 2107, 2735, 5257
BclI TGATCA 4 cut(s) 427, 2113, 3715, 3750
BcnI CCSGG 6 cut(s) 503, 936, 937, 3349, 3931, 5524
BfmI CTRYAG 7 cut(s) 615, 1728, 3590, 4323, 4470, 5223, 5658
BfoI RGCGCY 3 cut(s) 2674, 3620, 5243
BfrI CTTAAG 2 cut(s) 2297, 3127
BfuAI ACCTGC 2 cut(s) 5902, 6011
BfuI GTATCC 3 cut(s) 2107, 2735, 5257
BglI GCCNNNNNGGC 1 cut(s) 4774
BglII AGATCT 1 cut(s) 5393
BlnI CCTAGG 1 cut(s) 3190
BlpI GCTNAGC 4 cut(s) 870, 3461, 3709, 4476
BmcAI AGTACT 1 cut(s) 3774
Bme18I GGWCC 5 cut(s) 331, 362, 3254, 4441, 5282
BmeRI GACNNNNNGTC 2 cut(s) 457, 3785
BmeT110I CYCGRG 3 cut(s) 454, 935, 1677
BmgBI CACGTC 1 cut(s) 1787
BmrI ACTGGG 6 cut(s) 466, 714, 1917, 1995, 2117, 4496
BmuI ACTGGG 6 cut(s) 466, 714, 1917, 1995, 2117, 4496
BpiI GAAGAC 3 cut(s) 255, 1570, 5600
BplI GAGNNNNNCTC 4 cut(s) 4925, 4957, 6221, 6253
BpmI CTGGAG 3 cut(s) 297, 1284, 1582
Bpu10I CCTNAGC 3 cut(s) 2898, 3456, 5412
Bpu1102I GCTNAGC 4 cut(s) 870, 3461, 3709, 4476
Bpu14I TTCGAA 1 cut(s) 3961
BpuEI CTTGAG 5 cut(s) 942, 1108, 1704, 3623, 4088
BpuMI CCSGG 6 cut(s) 503, 936, 937, 3349, 3931, 5524
BsaAI YACGTR 2 cut(s) 3423, 5969
BsaI GGTCTC 2 cut(s) 760, 6212
BsaWI WCCGGW 3 cut(s) 2442, 5284, 5829
BsaXI ACNNNNNCTCC 6 cut(s) 1909, 1939, 2424, 2454, 3568, 3598
Bse118I RCCGGY 2 cut(s) 1958, 5284
Bse21I CCTNAGG 1 cut(s) 4193
Bse3DI GCAATG 5 cut(s) 1148, 2116, 3031, 3066, 4961
BseAI TCCGGA 1 cut(s) 2442
BseBI CCWGG 9 cut(s) 512, 672, 967, 990, 1041, 1080, 3002, 3291, 5559
BseMI GCAATG 5 cut(s) 1148, 2116, 3031, 3066, 4961
BseRI GAGGAG 7 cut(s) 2353, 3374, 3620, 3749, 3752, 4019, 5424
BseSI GKGCMC 5 cut(s) 966, 3322, 3354, 3942, 6098
BseYI CCCAGC 2 cut(s) 2059, 2194
BsgI GTGCAG 8 cut(s) 32, 1244, 1293, 1611, 2831, 4584, 5451, 5715
BshNI GGYRCC 3 cut(s) 4188, 4831, 5881
BshTI ACCGGT 1 cut(s) 5284
BsiHKAI GWGCWC 8 cut(s) 253, 741, 1369, 2363, 2406, 3942, 4482, 5857
BsiHKCI CYCGRG 3 cut(s) 454, 935, 1677
BslFI GGGAC 6 cut(s) 460, 518, 971, 4905, 4981, 5744
BsmBI CGTCTC 2 cut(s) 2444, 3767
BsmFI GGGAC 6 cut(s) 460, 518, 971, 4905, 4981, 5744
BsmI GAATGC 4 cut(s) 231, 1118, 3520, 4287
Bso31I GGTCTC 2 cut(s) 760, 6212
BsoBI CYCGRG 3 cut(s) 454, 935, 1677
Bsp119I TTCGAA 1 cut(s) 3961
Bsp120I GGGCCC 3 cut(s) 3318, 3350, 6094
Bsp13I TCCGGA 1 cut(s) 2442
Bsp1407I TGTACA 2 cut(s) 3147, 4729
Bsp1720I GCTNAGC 4 cut(s) 870, 3461, 3709, 4476
Bsp19I CCATGG 4 cut(s) 174, 1170, 6090, 6241
BspACI CCGC 8 cut(s) 81, 1995, 2100, 4541, 4870, 4924, 5752, 5860
BspEI TCCGGA 1 cut(s) 2442
BspHI TCATGA 1 cut(s) 430
BspMAI CTGCAG 4 cut(s) 4327, 4474, 5227, 5662
BspMI ACCTGC 2 cut(s) 5902, 6011
BspPI GGATC 8 cut(s) 403, 1051, 2499, 2743, 2756, 2874, 2887, 5600
BspQI GCTCTTC 1 cut(s) 4944
BspT104I TTCGAA 1 cut(s) 3961
BspT107I GGYRCC 3 cut(s) 4188, 4831, 5881
BspTI CTTAAG 2 cut(s) 2297, 3127
BspTNI GGTCTC 2 cut(s) 760, 6212
BsrBI CCGCTC 1 cut(s) 1997
BsrDI GCAATG 5 cut(s) 1148, 2116, 3031, 3066, 4961
BsrFI RCCGGY 2 cut(s) 1958, 5284
BsrGI TGTACA 2 cut(s) 3147, 4729
BssAI RCCGGY 2 cut(s) 1958, 5284
BssSI CACGAG 1 cut(s) 5378
BssT1I CCWWGG 6 cut(s) 174, 1170, 1626, 3190, 6090, 6241
Bst2BI CACGAG 1 cut(s) 5378
Bst2UI CCWGG 9 cut(s) 512, 672, 967, 990, 1041, 1080, 3002, 3291, 5559
Bst6I CTCTTC 6 cut(s) 548, 3881, 4403, 4546, 4944, 4959
BstAFI CTTAAG 2 cut(s) 2297, 3127
BstAPI GCANNNNNTGC 2 cut(s) 4036, 5894
BstAUI TGTACA 2 cut(s) 3147, 4729
BstBAI YACGTR 2 cut(s) 3423, 5969
BstBI TTCGAA 1 cut(s) 3961
BstDSI CCRYGG 6 cut(s) 174, 1170, 5067, 5182, 6090, 6241
BstEII GGTNACC 2 cut(s) 3866, 5158
BstENI CCTNNNNNAGG 5 cut(s) 1044, 1455, 1773, 6102, 6125
BstH2I RGCGCY 3 cut(s) 2674, 3620, 5243
BstHHI GCGC 3 cut(s) 2673, 3619, 5242
BstNI CCWGG 9 cut(s) 512, 672, 967, 990, 1041, 1080, 3002, 3291, 5559
BstNSI RCATGY 6 cut(s) 881, 1333, 1746, 2152, 2165, 4728
BstPI GGTNACC 2 cut(s) 3866, 5158
BstSFI CTRYAG 7 cut(s) 615, 1728, 3590, 4323, 4470, 5223, 5658
BstSLI GKGCMC 5 cut(s) 966, 3322, 3354, 3942, 6098
BstSNI TACGTA 1 cut(s) 3423
BstV2I GAAGAC 3 cut(s) 255, 1570, 5600
BstX2I RGATCY 4 cut(s) 395, 2748, 2879, 5393
BstXI CCANNNNNNTGG 2 cut(s) 2018, 3122
BstYI RGATCY 4 cut(s) 395, 2748, 2879, 5393
Bsu36I CCTNAGG 1 cut(s) 4193
BsuI GTATCC 3 cut(s) 2107, 2735, 5257
BtgI CCRYGG 6 cut(s) 174, 1170, 5067, 5182, 6090, 6241
BtgZI GCGATG 2 cut(s) 3488, 4829
BtrI CACGTC 1 cut(s) 1787
BtsI GCAGTG 1 cut(s) 4651
BveI ACCTGC 2 cut(s) 5902, 6011
CaiI CAGNNNCTG 7 cut(s) 1706, 1859, 2201, 4885, 5243, 5327, 6206
CciI TCATGA 1 cut(s) 430
CfoI GCGC 3 cut(s) 2673, 3619, 5242
Cfr10I RCCGGY 2 cut(s) 1958, 5284
Cfr9I CCCGGG 1 cut(s) 935
CsiI ACCWGGT 2 cut(s) 510, 670
CspAI ACCGGT 1 cut(s) 5284
CspCI CAANNNNNGTGG 2 cut(s) 5737, 5772
DraI TTTAAA 2 cut(s) 4626, 5688
DriI GACNNNNNGTC 2 cut(s) 457, 3785
EaeI YGGCCR 2 cut(s) 306, 4402
Eam1104I CTCTTC 6 cut(s) 548, 3881, 4403, 4546, 4944, 4959
Eam1105I GACNNNNNGTC 2 cut(s) 457, 3785
EarI CTCTTC 6 cut(s) 548, 3881, 4403, 4546, 4944, 4959
Ecl136II GAGCTC 4 cut(s) 251, 2361, 2404, 5855
Eco105I TACGTA 1 cut(s) 3423
Eco130I CCWWGG 6 cut(s) 174, 1170, 1626, 3190, 6090, 6241
Eco24I GRGCYC 9 cut(s) 81, 253, 2363, 2406, 3322, 3354, 4393, 5857, 6098
Eco31I GGTCTC 2 cut(s) 760, 6212
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 5 cut(s) 331, 362, 3254, 4441, 5282
Eco47III AGCGCT 1 cut(s) 2672
Eco53kI GAGCTC 4 cut(s) 251, 2361, 2404, 5855
Eco57I CTGAAG 5 cut(s) 849, 1375, 2388, 3678, 3821
Eco72I CACGTG 1 cut(s) 5969
Eco81I CCTNAGG 1 cut(s) 4193
Eco88I CYCGRG 3 cut(s) 454, 935, 1677
Eco91I GGTNACC 2 cut(s) 3866, 5158
EcoICRI GAGCTC 4 cut(s) 251, 2361, 2404, 5855
EcoNI CCTNNNNNAGG 5 cut(s) 1044, 1455, 1773, 6102, 6125
EcoO109I RGGNCCY 4 cut(s) 3254, 3319, 3351, 6095
EcoO65I GGTNACC 2 cut(s) 3866, 5158
EcoRI GAATTC 2 cut(s) 2586, 2606
EcoRII CCWGG 9 cut(s) 510, 670, 965, 988, 1039, 1078, 3000, 3289, 5557
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 6 cut(s) 174, 1170, 1626, 3190, 6090, 6241
EcoT38I GRGCYC 9 cut(s) 81, 253, 2363, 2406, 3322, 3354, 4393, 5857, 6098
ErhI CCWWGG 6 cut(s) 174, 1170, 1626, 3190, 6090, 6241
Esp3I CGTCTC 2 cut(s) 2444, 3767
FalI AAGNNNNNCTT 6 cut(s) 1261, 1293, 2594, 2626, 2999, 3031
FaqI GGGAC 6 cut(s) 460, 518, 971, 4905, 4981, 5744
FauI CCCGC 4 cut(s) 88, 4917, 5759, 5867
FauNDI CATATG 1 cut(s) 4945
FbaI TGATCA 4 cut(s) 427, 2113, 3715, 3750
FblI GTMKAC 1 cut(s) 2958
FriOI GRGCYC 9 cut(s) 81, 253, 2363, 2406, 3322, 3354, 4393, 5857, 6098
GlaI GCGC 3 cut(s) 2672, 3618, 5241
GsaI CCCAGC 2 cut(s) 2063, 2198
GsuI CTGGAG 3 cut(s) 297, 1284, 1582
HaeII RGCGCY 3 cut(s) 2674, 3620, 5243
HhaI GCGC 3 cut(s) 2673, 3619, 5242
Hin6I GCGC 3 cut(s) 2671, 3617, 5240
HinP1I GCGC 3 cut(s) 2671, 3617, 5240
HincII GTYRAC 5 cut(s) 1026, 1495, 1801, 3576, 6055
HindII GTYRAC 5 cut(s) 1026, 1495, 1801, 3576, 6055
HindIII AAGCTT 3 cut(s) 2873, 3875, 4064
HpaI GTTAAC 3 cut(s) 1801, 3576, 6055
HpyCH4IV ACGT 5 cut(s) 1786, 2722, 2755, 3422, 5968
HpySE526I ACGT 5 cut(s) 1786, 2722, 2755, 3422, 5968
HspAI GCGC 3 cut(s) 2671, 3617, 5240
Kpn2I TCCGGA 1 cut(s) 2442
KpnI GGTACC 1 cut(s) 4192
Ksp22I TGATCA 4 cut(s) 427, 2113, 3715, 3750
KspAI GTTAAC 3 cut(s) 1801, 3576, 6055
LguI GCTCTTC 1 cut(s) 4944
MabI ACCWGGT 2 cut(s) 510, 670
MaeII ACGT 5 cut(s) 1786, 2722, 2755, 3422, 5968
MbiI CCGCTC 1 cut(s) 1997
MfeI CAATTG 2 cut(s) 2103, 5444
MflI RGATCY 4 cut(s) 395, 2748, 2879, 5393
MlsI TGGCCA 1 cut(s) 4404
MluNI TGGCCA 1 cut(s) 4404
Mox20I TGGCCA 1 cut(s) 4404
MroI TCCGGA 1 cut(s) 2442
MroXI GAANNNNTTC 4 cut(s) 1444, 2462, 2681, 4802
MscI TGGCCA 1 cut(s) 4404
MslI CAYNNNNRTG 7 cut(s) 1140, 1741, 2520, 3162, 5630, 5726, 5987
Msp20I TGGCCA 1 cut(s) 4404
MspA1I CMGCKG 4 cut(s) 1902, 3713, 4475, 6203
MspCI CTTAAG 2 cut(s) 2297, 3127
MunI CAATTG 2 cut(s) 2103, 5444
Mva1269I GAATGC 4 cut(s) 231, 1118, 3520, 4287
MvaI CCWGG 9 cut(s) 512, 672, 967, 990, 1041, 1080, 3002, 3291, 5559
NciI CCSGG 6 cut(s) 503, 936, 937, 3349, 3931, 5524
NcoI CCATGG 4 cut(s) 174, 1170, 6090, 6241
NdeI CATATG 1 cut(s) 4945
NmeAIII GCCGAG 1 cut(s) 4753
NmuCI GTSAC 8 cut(s) 12, 997, 2326, 2996, 3141, 4566, 4780, 5287
NspI RCATGY 6 cut(s) 881, 1333, 1746, 2152, 2165, 4728
NspV TTCGAA 1 cut(s) 3961
OliI CACNNNNGTG 1 cut(s) 1140
PaeI GCATGC 2 cut(s) 881, 1333
PaeR7I CTCGAG 2 cut(s) 454, 1677
PagI TCATGA 1 cut(s) 430
PaqCI CACCTGC 2 cut(s) 5902, 6011
PciI ACATGT 2 cut(s) 2148, 2161
PciSI GCTCTTC 1 cut(s) 4944
PcsI WCGNNNNNNNCGW 1 cut(s) 2728
PctI GAATGC 4 cut(s) 231, 1118, 3520, 4287
PdmI GAANNNNTTC 4 cut(s) 1444, 2462, 2681, 4802
PflMI CCANNNNNTGG 2 cut(s) 359, 1040
PfoI TCCNGGA 1 cut(s) 1039
PinAI ACCGGT 1 cut(s) 5284
PmaCI CACGTG 1 cut(s) 5969
PmlI CACGTG 1 cut(s) 5969
Ppu21I YACGTR 2 cut(s) 3423, 5969
PpuMI RGGWCCY 1 cut(s) 3254
PscI ACATGT 2 cut(s) 2148, 2161
PshBI ATTAAT 3 cut(s) 189, 2781, 3330
PsiI TTATAA 1 cut(s) 4049
Psp124BI GAGCTC 4 cut(s) 253, 2363, 2406, 5857
Psp5II RGGWCCY 1 cut(s) 3254
Psp6I CCWGG 9 cut(s) 510, 670, 965, 988, 1039, 1078, 3000, 3289, 5557
PspCI CACGTG 1 cut(s) 5969
PspEI GGTNACC 2 cut(s) 3866, 5158
PspFI CCCAGC 2 cut(s) 2059, 2194
PspGI CCWGG 9 cut(s) 510, 670, 965, 988, 1039, 1078, 3000, 3289, 5557
PspOMI GGGCCC 3 cut(s) 3318, 3350, 6094
PspPPI RGGWCCY 1 cut(s) 3254
PspXI VCTCGAGB 1 cut(s) 454
PstI CTGCAG 4 cut(s) 4327, 4474, 5227, 5662
PstNI CAGNNNCTG 7 cut(s) 1706, 1859, 2201, 4885, 5243, 5327, 6206
PsuI RGATCY 4 cut(s) 395, 2748, 2879, 5393
PvuII CAGCTG 4 cut(s) 1902, 3713, 4475, 6203
RseI CAYNNNNRTG 7 cut(s) 1140, 1741, 2520, 3162, 5630, 5726, 5987
SacI GAGCTC 4 cut(s) 253, 2363, 2406, 5857
SapI GCTCTTC 1 cut(s) 4944
ScaI AGTACT 1 cut(s) 3774
SexAI ACCWGGT 2 cut(s) 510, 670
SfcI CTRYAG 7 cut(s) 615, 1728, 3590, 4323, 4470, 5223, 5658
Sfr274I CTCGAG 2 cut(s) 454, 1677
SfuI TTCGAA 1 cut(s) 3961
SinI GGWCC 5 cut(s) 331, 362, 3254, 4441, 5282
SlaI CTCGAG 2 cut(s) 454, 1677
SmaI CCCGGG 1 cut(s) 937
SmiMI CAYNNNNRTG 7 cut(s) 1140, 1741, 2520, 3162, 5630, 5726, 5987
SmlI CTYRAG 9 cut(s) 454, 957, 1123, 1677, 1719, 2297, 3127, 3602, 4067
SmoI CTYRAG 9 cut(s) 454, 957, 1123, 1677, 1719, 2297, 3127, 3602, 4067
SnaBI TACGTA 1 cut(s) 3423
SphI GCATGC 2 cut(s) 881, 1333
SsiI CCGC 8 cut(s) 81, 1995, 2100, 4541, 4870, 4924, 5752, 5860
SspI AATATT 3 cut(s) 2029, 4341, 4559
SstI GAGCTC 4 cut(s) 253, 2363, 2406, 5857
StyI CCWWGG 6 cut(s) 174, 1170, 1626, 3190, 6090, 6241
TaiI ACGT 5 cut(s) 1789, 2725, 2758, 3425, 5971
TaqII GACCGA 1 cut(s) 4095
TatI WGTACW 5 cut(s) 371, 2226, 3147, 3772, 4729
TseFI GTSAC 8 cut(s) 12, 997, 2326, 2996, 3141, 4566, 4780, 5287
Tsp45I GTSAC 8 cut(s) 12, 997, 2326, 2996, 3141, 4566, 4780, 5287
TspGWI ACGGA 6 cut(s) 2498, 4364, 4976, 5056, 5410, 5598
TspMI CCCGGG 1 cut(s) 935
Van91I CCANNNNNTGG 2 cut(s) 359, 1040
Vha464I CTTAAG 2 cut(s) 2297, 3127
VneI GTGCAC 1 cut(s) 3938
VpaK11BI GGWCC 5 cut(s) 331, 362, 3254, 4441, 5282
VspI ATTAAT 3 cut(s) 189, 2781, 3330
XagI CCTNNNNNAGG 5 cut(s) 1044, 1455, 1773, 6102, 6125
XapI RAATTY 7 cut(s) 2450, 2586, 2606, 3401, 4970, 6034, 6046
XbaI TCTAGA 2 cut(s) 1280, 2075
XceI RCATGY 6 cut(s) 881, 1333, 1746, 2152, 2165, 4728
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XhoI CTCGAG 2 cut(s) 454, 1677
XmaI CCCGGG 1 cut(s) 935
XmaJI CCTAGG 1 cut(s) 3190
XmiI GTMKAC 1 cut(s) 2958
XmnI GAANNNNTTC 4 cut(s) 1444, 2462, 2681, 4802
ZrmI AGTACT 1 cut(s) 3774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.