Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 987 - 1149 | 1.3e-12 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 991 - 1282 | 7.2e-91 | SNF2-related domain |
| Helicase_C | PF00271 | 1308 - 1421 | 1.1e-21 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1516 - 1612 | 2.4e-15 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3908 |
| AarI | CACCTGC | 2 cut(s) | 5791, 6940 |
| Acc36I | ACCTGC | 3 cut(s) | 5791, 6341, 6940 |
| Acc65I | GGTACC | 1 cut(s) | 4047 |
| AccB1I | GGYRCC | 5 cut(s) | 3209, 4047, 4088, 5770, 9391 |
| AccB7I | CCANNNNNTGG | 6 cut(s) | 344, 647, 1058, 1964, 4700, 6805 |
| AccBSI | CCGCTC | 2 cut(s) | 8297, 8985 |
| AccI | GTMKAC | 2 cut(s) | 446, 8761 |
| AccII | CGCG | 4 cut(s) | 474, 3790, 4086, 5749 |
| AccIII | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| AclI | AACGTT | 1 cut(s) | 4765 |
| AcoI | YGGCCR | 2 cut(s) | 4261, 4771 |
| AdeI | CACNNNGTG | 1 cut(s) | 5420 |
| AfeI | AGCGCT | 1 cut(s) | 2531 |
| AflII | CTTAAG | 3 cut(s) | 2519, 2986, 6367 |
| AflIII | ACRYGT | 2 cut(s) | 2189, 6695 |
| AhdI | GACNNNNNGTC | 5 cut(s) | 442, 3644, 4921, 9507, 9982 |
| AhlI | ACTAGT | 2 cut(s) | 5192, 5237 |
| AjiI | CACGTC | 2 cut(s) | 2647, 7602 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1434, 1466, 1537, 1569 |
| AleI | CACNNNNGTG | 3 cut(s) | 5477, 9068, 9729 |
| Alw21I | GWGCWC | 9 cut(s) | 2222, 3419, 3801, 4341, 7257, 7599, 7636, 8170, 8898 |
| Alw44I | GTGCAC | 2 cut(s) | 3797, 7632 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 1130, 1769, 5920, 6086, 7070, 7490, 7835 |
| Ama87I | CYCGRG | 5 cut(s) | 822, 4745, 5952, 7089, 7623 |
| Aor13HI | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| Aor51HI | AGCGCT | 1 cut(s) | 2531 |
| ApaI | GGGCCC | 1 cut(s) | 3181 |
| ApaLI | GTGCAC | 2 cut(s) | 3797, 7632 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1639, 1671, 2015, 2047, 6566, 6598 |
| AseI | ATTAAT | 3 cut(s) | 174, 1869, 8700 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 2540, 2561, 4026, 4299, 4661, 5521, 6271 |
| Asp718I | GGTACC | 1 cut(s) | 4047 |
| AspA2I | CCTAGG | 1 cut(s) | 7319 |
| AspLEI | GCGC | 7 cut(s) | 474, 1384, 2532, 3478, 3790, 5728, 9322 |
| AsuC2I | CCSGG | 3 cut(s) | 4115, 4775, 9901 |
| AsuII | TTCGAA | 1 cut(s) | 3820 |
| AsuNHI | GCTAGC | 2 cut(s) | 1916, 6500 |
| AvaI | CYCGRG | 5 cut(s) | 822, 4745, 5952, 7089, 7623 |
| AvrII | CCTAGG | 1 cut(s) | 7319 |
| AxyI | CCTNAGG | 2 cut(s) | 3216, 4052 |
| BaeGI | GKGCMC | 7 cut(s) | 3181, 3214, 3801, 4093, 7636, 8191, 9075 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 5982, 6015, 7059, 7092 |
| BalI | TGGCCA | 1 cut(s) | 4263 |
| BamHI | GGATCC | 3 cut(s) | 2607, 6358, 9301 |
| BanI | GGYRCC | 5 cut(s) | 3209, 4047, 4088, 5770, 9391 |
| BauI | CACGAG | 2 cut(s) | 6666, 6977 |
| Bbv12I | GWGCWC | 9 cut(s) | 2222, 3419, 3801, 4341, 7257, 7599, 7636, 8170, 8898 |
| BbvCI | CCTCAGC | 4 cut(s) | 5898, 7179, 8046, 10155 |
| BceAI | ACGGC | 5 cut(s) | 2280, 5031, 6618, 9994, 10137 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 8672, 8706 |
| BciVI | GTATCC | 5 cut(s) | 2594, 5122, 6647, 7267, 9529 |
| BclI | TGATCA | 6 cut(s) | 412, 3609, 5596, 8053, 8356, 9786 |
| BcnI | CCSGG | 3 cut(s) | 4115, 4775, 9901 |
| BcuI | ACTAGT | 2 cut(s) | 5192, 5237 |
| BfmI | CTRYAG | 9 cut(s) | 600, 4182, 4329, 5616, 6078, 8182, 8286, 9522, 9663 |
| BfoI | RGCGCY | 3 cut(s) | 2533, 3479, 9323 |
| BfrI | CTTAAG | 3 cut(s) | 2519, 2986, 6367 |
| BfuAI | ACCTGC | 3 cut(s) | 5791, 6341, 6940 |
| BfuI | GTATCC | 5 cut(s) | 2594, 5122, 6647, 7267, 9529 |
| BglII | AGATCT | 1 cut(s) | 9230 |
| BlnI | CCTAGG | 1 cut(s) | 7319 |
| BlpI | GCTNAGC | 6 cut(s) | 2865, 2931, 3573, 4335, 5037, 9316 |
| BmcAI | AGTACT | 4 cut(s) | 2894, 3633, 5530, 8496 |
| BmeRI | GACNNNNNGTC | 5 cut(s) | 442, 3644, 4921, 9507, 9982 |
| BmeT110I | CYCGRG | 5 cut(s) | 822, 4745, 5952, 7089, 7623 |
| BmgBI | CACGTC | 2 cut(s) | 2647, 7602 |
| BmrI | ACTGGG | 4 cut(s) | 1611, 3896, 5142, 8852 |
| BmtI | GCTAGC | 2 cut(s) | 1920, 6504 |
| BmuI | ACTGGG | 4 cut(s) | 1611, 3896, 5142, 8852 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1637, 1669 |
| BpmI | CTGGAG | 6 cut(s) | 1299, 1692, 6099, 6585, 8334, 8541 |
| Bpu10I | CCTNAGC | 4 cut(s) | 5898, 7179, 8046, 10155 |
| Bpu1102I | GCTNAGC | 6 cut(s) | 2865, 2931, 3573, 4335, 5037, 9316 |
| Bpu14I | TTCGAA | 1 cut(s) | 3820 |
| BpuEI | CTTGAG | 8 cut(s) | 640, 957, 1123, 2377, 3482, 3947, 8154, 9197 |
| BpuMI | CCSGG | 3 cut(s) | 4115, 4775, 9901 |
| Bsa29I | ATCGAT | 1 cut(s) | 3940 |
| BsaAI | YACGTR | 1 cut(s) | 87 |
| BsaBI | GATNNNNATC | 4 cut(s) | 372, 4215, 8361, 8721 |
| BsaI | GGTCTC | 5 cut(s) | 736, 1189, 1781, 4418, 4746 |
| BsaWI | WCCGGW | 9 cut(s) | 2301, 3363, 3651, 4858, 5718, 6319, 6689, 9775, 9943 |
| Bse118I | RCCGGY | 3 cut(s) | 1801, 2772, 7433 |
| Bse21I | CCTNAGG | 2 cut(s) | 3216, 4052 |
| Bse3DI | GCAATG | 4 cut(s) | 2890, 4680, 4820, 5871 |
| Bse8I | GATNNNNATC | 4 cut(s) | 372, 4215, 8361, 8721 |
| BseAI | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| BseCI | ATCGAT | 1 cut(s) | 3940 |
| BseJI | GATNNNNATC | 4 cut(s) | 372, 4215, 8361, 8721 |
| BseMI | GCAATG | 4 cut(s) | 2890, 4680, 4820, 5871 |
| BseSI | GKGCMC | 7 cut(s) | 3181, 3214, 3801, 4093, 7636, 8191, 9075 |
| BseYI | CCCAGC | 2 cut(s) | 950, 4345 |
| BsgI | GTGCAG | 7 cut(s) | 1281, 1308, 2690, 4443, 6093, 6405, 6927 |
| Bsh1236I | CGCG | 4 cut(s) | 474, 3790, 4086, 5749 |
| BshNI | GGYRCC | 5 cut(s) | 3209, 4047, 4088, 5770, 9391 |
| BshVI | ATCGAT | 1 cut(s) | 3940 |
| BsiHKAI | GWGCWC | 9 cut(s) | 2222, 3419, 3801, 4341, 7257, 7599, 7636, 8170, 8898 |
| BsiHKCI | CYCGRG | 5 cut(s) | 822, 4745, 5952, 7089, 7623 |
| BsmBI | CGTCTC | 3 cut(s) | 2303, 3217, 7647 |
| BsmI | GAATGC | 6 cut(s) | 3379, 4146, 6391, 7543, 8975, 9553 |
| Bso31I | GGTCTC | 5 cut(s) | 736, 1189, 1781, 4418, 4746 |
| BsoBI | CYCGRG | 5 cut(s) | 822, 4745, 5952, 7089, 7623 |
| Bsp119I | TTCGAA | 1 cut(s) | 3820 |
| Bsp120I | GGGCCC | 1 cut(s) | 3177 |
| Bsp13I | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| Bsp1407I | TGTACA | 3 cut(s) | 4588, 5227, 7724 |
| Bsp1720I | GCTNAGC | 6 cut(s) | 2865, 2931, 3573, 4335, 5037, 9316 |
| Bsp19I | CCATGG | 3 cut(s) | 159, 7359, 9621 |
| BspDI | ATCGAT | 1 cut(s) | 3940 |
| BspEI | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| BspFNI | CGCG | 4 cut(s) | 474, 3790, 4086, 5749 |
| BspHI | TCATGA | 5 cut(s) | 415, 6517, 7576, 7909, 8149 |
| BspMAI | CTGCAG | 4 cut(s) | 604, 4186, 4333, 6082 |
| BspMI | ACCTGC | 3 cut(s) | 5791, 6341, 6940 |
| BspOI | GCTAGC | 2 cut(s) | 1920, 6504 |
| BspQI | GCTCTTC | 4 cut(s) | 2227, 2424, 4803, 9145 |
| BspT104I | TTCGAA | 1 cut(s) | 3820 |
| BspT107I | GGYRCC | 5 cut(s) | 3209, 4047, 4088, 5770, 9391 |
| BspTI | CTTAAG | 3 cut(s) | 2519, 2986, 6367 |
| BspTNI | GGTCTC | 5 cut(s) | 736, 1189, 1781, 4418, 4746 |
| BsrBI | CCGCTC | 2 cut(s) | 8297, 8985 |
| BsrDI | GCAATG | 4 cut(s) | 2890, 4680, 4820, 5871 |
| BsrFI | RCCGGY | 3 cut(s) | 1801, 2772, 7433 |
| BsrGI | TGTACA | 3 cut(s) | 4588, 5227, 7724 |
| BssAI | RCCGGY | 3 cut(s) | 1801, 2772, 7433 |
| BssSI | CACGAG | 2 cut(s) | 6666, 6977 |
| Bst2BI | CACGAG | 2 cut(s) | 6666, 6977 |
| BstAFI | CTTAAG | 3 cut(s) | 2519, 2986, 6367 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3583, 6086, 6181 |
| BstAUI | TGTACA | 3 cut(s) | 4588, 5227, 7724 |
| BstBAI | YACGTR | 1 cut(s) | 87 |
| BstBI | TTCGAA | 1 cut(s) | 3820 |
| BstDSI | CCRYGG | 7 cut(s) | 159, 5047, 5747, 6556, 7359, 9621, 9831 |
| BstEII | GGTNACC | 3 cut(s) | 3359, 5023, 9610 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| BstFNI | CGCG | 4 cut(s) | 474, 3790, 4086, 5749 |
| BstH2I | RGCGCY | 3 cut(s) | 2533, 3479, 9323 |
| BstHHI | GCGC | 7 cut(s) | 474, 1384, 2532, 3478, 3790, 5728, 9322 |
| BstNSI | RCATGY | 7 cut(s) | 1809, 2193, 4906, 6048, 7178, 7822, 7955 |
| BstPI | GGTNACC | 3 cut(s) | 3359, 5023, 9610 |
| BstSFI | CTRYAG | 9 cut(s) | 600, 4182, 4329, 5616, 6078, 8182, 8286, 9522, 9663 |
| BstSLI | GKGCMC | 7 cut(s) | 3181, 3214, 3801, 4093, 7636, 8191, 9075 |
| BstUI | CGCG | 4 cut(s) | 474, 3790, 4086, 5749 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 553, 1748, 5173 |
| Bsu15I | ATCGAT | 1 cut(s) | 3940 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3216, 4052 |
| BsuI | GTATCC | 5 cut(s) | 2594, 5122, 6647, 7267, 9529 |
| BsuTUI | ATCGAT | 1 cut(s) | 3940 |
| BtgI | CCRYGG | 7 cut(s) | 159, 5047, 5747, 6556, 7359, 9621, 9831 |
| BtgZI | GCGATG | 1 cut(s) | 5105 |
| BtrI | CACGTC | 2 cut(s) | 2647, 7602 |
| BtsI | GCAGTG | 5 cut(s) | 746, 1391, 4510, 6126, 9663 |
| BveI | ACCTGC | 3 cut(s) | 5791, 6341, 6940 |
| CaiI | CAGNNNCTG | 7 cut(s) | 1130, 1769, 5920, 6086, 7070, 7490, 7835 |
| CciI | TCATGA | 5 cut(s) | 415, 6517, 7576, 7909, 8149 |
| CfoI | GCGC | 7 cut(s) | 474, 1384, 2532, 3478, 3790, 5728, 9322 |
| Cfr10I | RCCGGY | 3 cut(s) | 1801, 2772, 7433 |
| Cfr42I | CCGCGG | 1 cut(s) | 5750 |
| ClaI | ATCGAT | 1 cut(s) | 3940 |
| CseI | GACGC | 4 cut(s) | 485, 2242, 8747, 9023 |
| CsiI | ACCWGGT | 1 cut(s) | 5416 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 2796, 2831, 6918, 6953, 7326, 7361, 9813, 9848 |
| DraI | TTTAAA | 4 cut(s) | 2515, 5122, 7866, 8436 |
| DraIII | CACNNNGTG | 1 cut(s) | 5420 |
| DriI | GACNNNNNGTC | 5 cut(s) | 442, 3644, 4921, 9507, 9982 |
| EaeI | YGGCCR | 2 cut(s) | 4261, 4771 |
| Eam1105I | GACNNNNNGTC | 5 cut(s) | 442, 3644, 4921, 9507, 9982 |
| EciI | GGCGGA | 2 cut(s) | 9428, 10139 |
| Ecl136II | GAGCTC | 4 cut(s) | 2220, 3417, 8168, 8896 |
| Eco31I | GGTCTC | 5 cut(s) | 736, 1189, 1781, 4418, 4746 |
| Eco32I | GATATC | 3 cut(s) | 150, 2479, 2657 |
| Eco47III | AGCGCT | 1 cut(s) | 2531 |
| Eco53kI | GAGCTC | 4 cut(s) | 2220, 3417, 8168, 8896 |
| Eco81I | CCTNAGG | 2 cut(s) | 3216, 4052 |
| Eco88I | CYCGRG | 5 cut(s) | 822, 4745, 5952, 7089, 7623 |
| Eco91I | GGTNACC | 3 cut(s) | 3359, 5023, 9610 |
| EcoICRI | GAGCTC | 4 cut(s) | 2220, 3417, 8168, 8896 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| EcoO109I | RGGNCCY | 5 cut(s) | 3113, 3178, 4750, 7324, 9995 |
| EcoO65I | GGTNACC | 3 cut(s) | 3359, 5023, 9610 |
| EcoRI | GAATTC | 2 cut(s) | 2445, 7141 |
| EcoRV | GATATC | 3 cut(s) | 150, 2479, 2657 |
| EcoT22I | ATGCAT | 5 cut(s) | 5988, 6391, 7953, 9376, 10090 |
| Esp3I | CGTCTC | 3 cut(s) | 2303, 3217, 7647 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2453, 2485, 6668, 6700, 6760, 6792, 7961, 7993 |
| FauI | CCCGC | 2 cut(s) | 7788, 8131 |
| FauNDI | CATATG | 3 cut(s) | 932, 1573, 4804 |
| FbaI | TGATCA | 6 cut(s) | 412, 3609, 5596, 8053, 8356, 9786 |
| FblI | GTMKAC | 2 cut(s) | 446, 8761 |
| GlaI | GCGC | 7 cut(s) | 473, 1383, 2531, 3477, 3789, 5727, 9321 |
| GsaI | CCCAGC | 2 cut(s) | 954, 4349 |
| GsuI | CTGGAG | 6 cut(s) | 1299, 1692, 6099, 6585, 8334, 8541 |
| HaeII | RGCGCY | 3 cut(s) | 2533, 3479, 9323 |
| HgaI | GACGC | 4 cut(s) | 485, 2242, 8747, 9023 |
| HhaI | GCGC | 7 cut(s) | 474, 1384, 2532, 3478, 3790, 5728, 9322 |
| Hin6I | GCGC | 7 cut(s) | 472, 1382, 2530, 3476, 3788, 5726, 9320 |
| HinP1I | GCGC | 7 cut(s) | 472, 1382, 2530, 3476, 3788, 5726, 9320 |
| HindIII | AAGCTT | 7 cut(s) | 79, 198, 2129, 3734, 3923, 7902, 9024 |
| HpaI | GTTAAC | 2 cut(s) | 3435, 9949 |
| Hpy99I | CGWCG | 2 cut(s) | 479, 6300 |
| HspAI | GCGC | 7 cut(s) | 472, 1382, 2530, 3476, 3788, 5726, 9320 |
| KflI | GGGWCCC | 1 cut(s) | 7324 |
| Kpn2I | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| KpnI | GGTACC | 1 cut(s) | 4051 |
| KroI | GCCGGC | 2 cut(s) | 1801, 7433 |
| KroNI | GCCGGC | 2 cut(s) | 1803, 7435 |
| Ksp22I | TGATCA | 6 cut(s) | 412, 3609, 5596, 8053, 8356, 9786 |
| KspAI | GTTAAC | 2 cut(s) | 3435, 9949 |
| KspI | CCGCGG | 1 cut(s) | 5750 |
| LguI | GCTCTTC | 4 cut(s) | 2227, 2424, 4803, 9145 |
| MabI | ACCWGGT | 1 cut(s) | 5416 |
| MbiI | CCGCTC | 2 cut(s) | 8297, 8985 |
| MfeI | CAATTG | 3 cut(s) | 3771, 5268, 6825 |
| MlsI | TGGCCA | 1 cut(s) | 4263 |
| MluNI | TGGCCA | 1 cut(s) | 4263 |
| MmeI | TCCRAC | 9 cut(s) | 771, 2635, 5333, 5566, 6213, 7430, 8923, 9672, 9966 |
| Mox20I | TGGCCA | 1 cut(s) | 4263 |
| Mph1103I | ATGCAT | 5 cut(s) | 5988, 6391, 7953, 9376, 10090 |
| MroI | TCCGGA | 4 cut(s) | 2301, 3651, 4858, 6689 |
| MroNI | GCCGGC | 2 cut(s) | 1801, 7433 |
| MroXI | GAANNNNTTC | 7 cut(s) | 2540, 2561, 4026, 4299, 4661, 5521, 6271 |
| MscI | TGGCCA | 1 cut(s) | 4263 |
| Msp20I | TGGCCA | 1 cut(s) | 4263 |
| MspA1I | CMGCKG | 6 cut(s) | 3572, 4334, 5749, 9286, 9325, 10154 |
| MspCI | CTTAAG | 3 cut(s) | 2519, 2986, 6367 |
| MssI | GTTTAAAC | 1 cut(s) | 2515 |
| MunI | CAATTG | 3 cut(s) | 3771, 5268, 6825 |
| Mva1269I | GAATGC | 6 cut(s) | 3379, 4146, 6391, 7543, 8975, 9553 |
| MvnI | CGCG | 4 cut(s) | 474, 3790, 4086, 5749 |
| NaeI | GCCGGC | 2 cut(s) | 1803, 7435 |
| NciI | CCSGG | 3 cut(s) | 4115, 4775, 9901 |
| NcoI | CCATGG | 3 cut(s) | 159, 7359, 9621 |
| NdeI | CATATG | 3 cut(s) | 932, 1573, 4804 |
| NgoMIV | GCCGGC | 2 cut(s) | 1801, 7433 |
| NheI | GCTAGC | 2 cut(s) | 1916, 6500 |
| NmeAIII | GCCGAG | 1 cut(s) | 8745 |
| NsiI | ATGCAT | 5 cut(s) | 5988, 6391, 7953, 9376, 10090 |
| NspI | RCATGY | 7 cut(s) | 1809, 2193, 4906, 6048, 7178, 7822, 7955 |
| NspV | TTCGAA | 1 cut(s) | 3820 |
| OliI | CACNNNNGTG | 3 cut(s) | 5477, 9068, 9729 |
| PaeI | GCATGC | 2 cut(s) | 6048, 7178 |
| PaeR7I | CTCGAG | 2 cut(s) | 7089, 7623 |
| PagI | TCATGA | 5 cut(s) | 415, 6517, 7576, 7909, 8149 |
| PaqCI | CACCTGC | 2 cut(s) | 5791, 6940 |
| PciI | ACATGT | 1 cut(s) | 2189 |
| PciSI | GCTCTTC | 4 cut(s) | 2227, 2424, 4803, 9145 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2587, 7338 |
| PctI | GAATGC | 6 cut(s) | 3379, 4146, 6391, 7543, 8975, 9553 |
| PdiI | GCCGGC | 2 cut(s) | 1803, 7435 |
| PdmI | GAANNNNTTC | 7 cut(s) | 2540, 2561, 4026, 4299, 4661, 5521, 6271 |
| PflFI | GACNNNGTC | 1 cut(s) | 6261 |
| PflMI | CCANNNNNTGG | 6 cut(s) | 344, 647, 1058, 1964, 4700, 6805 |
| PfoI | TCCNGGA | 3 cut(s) | 1353, 6601, 9899 |
| PmeI | GTTTAAAC | 1 cut(s) | 2515 |
| Ppu21I | YACGTR | 1 cut(s) | 87 |
| PpuMI | RGGWCCY | 2 cut(s) | 3113, 7324 |
| PscI | ACATGT | 1 cut(s) | 2189 |
| PshBI | ATTAAT | 3 cut(s) | 174, 1869, 8700 |
| PsiI | TTATAA | 1 cut(s) | 3908 |
| Psp124BI | GAGCTC | 4 cut(s) | 2222, 3419, 8170, 8898 |
| Psp1406I | AACGTT | 1 cut(s) | 4765 |
| Psp5II | RGGWCCY | 2 cut(s) | 3113, 7324 |
| PspEI | GGTNACC | 3 cut(s) | 3359, 5023, 9610 |
| PspFI | CCCAGC | 2 cut(s) | 950, 4345 |
| PspOMI | GGGCCC | 1 cut(s) | 3177 |
| PspPPI | RGGWCCY | 2 cut(s) | 3113, 7324 |
| PstI | CTGCAG | 4 cut(s) | 604, 4186, 4333, 6082 |
| PstNI | CAGNNNCTG | 7 cut(s) | 1130, 1769, 5920, 6086, 7070, 7490, 7835 |
| PsyI | GACNNNGTC | 1 cut(s) | 6261 |
| PvuII | CAGCTG | 3 cut(s) | 3572, 4334, 10154 |
| SacI | GAGCTC | 4 cut(s) | 2222, 3419, 8170, 8898 |
| SacII | CCGCGG | 1 cut(s) | 5750 |
| SapI | GCTCTTC | 4 cut(s) | 2227, 2424, 4803, 9145 |
| ScaI | AGTACT | 4 cut(s) | 2894, 3633, 5530, 8496 |
| SexAI | ACCWGGT | 1 cut(s) | 5416 |
| SfcI | CTRYAG | 9 cut(s) | 600, 4182, 4329, 5616, 6078, 8182, 8286, 9522, 9663 |
| Sfr274I | CTCGAG | 2 cut(s) | 7089, 7623 |
| Sfr303I | CCGCGG | 1 cut(s) | 5750 |
| SfuI | TTCGAA | 1 cut(s) | 3820 |
| SgrBI | CCGCGG | 1 cut(s) | 5750 |
| SlaI | CTCGAG | 2 cut(s) | 7089, 7623 |
| SpeI | ACTAGT | 2 cut(s) | 5192, 5237 |
| SphI | GCATGC | 2 cut(s) | 6048, 7178 |
| SspI | AATATT | 8 cut(s) | 688, 1015, 3502, 4200, 4418, 7155, 7733, 8578 |
| SstI | GAGCTC | 4 cut(s) | 2222, 3419, 8170, 8898 |
| TaqII | GACCGA | 2 cut(s) | 308, 3123 |
| TauI | GCSGC | 3 cut(s) | 5752, 9325, 9397 |
| TspGWI | ACGGA | 2 cut(s) | 5986, 9518 |
| Tth111I | GACNNNGTC | 1 cut(s) | 6261 |
| Van91I | CCANNNNNTGG | 6 cut(s) | 344, 647, 1058, 1964, 4700, 6805 |
| Vha464I | CTTAAG | 3 cut(s) | 2519, 2986, 6367 |
| VneI | GTGCAC | 2 cut(s) | 3797, 7632 |
| VspI | ATTAAT | 3 cut(s) | 174, 1869, 8700 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| XbaI | TCTAGA | 2 cut(s) | 8675, 9484 |
| XceI | RCATGY | 7 cut(s) | 1809, 2193, 4906, 6048, 7178, 7822, 7955 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 6964, 7009, 9385 |
| XhoI | CTCGAG | 2 cut(s) | 7089, 7623 |
| XmaJI | CCTAGG | 1 cut(s) | 7319 |
| XmiI | GTMKAC | 2 cut(s) | 446, 8761 |
| XmnI | GAANNNNTTC | 7 cut(s) | 2540, 2561, 4026, 4299, 4661, 5521, 6271 |
| ZrmI | AGTACT | 4 cut(s) | 2894, 3633, 5530, 8496 |
| Zsp2I | ATGCAT | 5 cut(s) | 5988, 6391, 7953, 9376, 10090 |