RLG00000030287
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001231
Physical Location & Seq
Forward (+)
59021781 .. 59023137
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030287

Sequence Viewer

Length: 1161 bp
ATGGATTCCCACGATGCTTCTGGGAGAGTGGCAGAAATTGTTCAGCCTGTGGTTACATTAACCATGGGCAGTGATAGTGTTGAAGGCTCATCTGAGGCAGGGCCTGTAGGCAGTCTCAAGTTACAGGAGTCGGAACATGAAGCTAAAGCTAGTGATGCTTTTCAGGTATCTGGGACACTGCCTGAAATTGTGTCTGGAAACATTGATCAGCCTCTGGTTTCTTTGACTGTGGGAGGTGATAGTGTTGTAGGCTTATCTGAGGCACAACCTATAGACAGCTCCAAGCCGCCAGAGGAGTTGGAATGGGCAGCTAAAGTTGTTGAAACTTCTCAGATTTGTGTGACAAGCATAGATCAGCCTCCAATTTCCTTGACTACGGGGCGTGATATTGAACGTTTTGTAGGTAGCTGTAAACCTCCAGAGGAGGTGGAATGTGAGGTTAAAGTTGGTAATACTTCTCAAGTTAATGGGTCATTGCCGGCAAATGTGTCTGAAAACATGGATTTCCGGCCCTCTTCTGAAGCTGAAGTTGGTAATACTTCTCAAGTTTATGAGTCATTGCAGGAAAATGCGTCTGAAAACCTGGATTTCCAGCTCTCTTCTGAAGCTAAAGCTGGTGATTTCTCTGACATTTGTGAGACATTGAAAGAAGTTGTGCCCGAAAACATGGATTTGCAGCCATGTTCAACAGGGAAGAAGTCGGAATCAGAAACTATATTTGGTGTTGCTTCTCAGGTTTGTGAGACAGTGTTGGAGTTTGTACCTGAGAACATGGATTTGCAGCCATCTTCAACAGCGGATGAGTCGGAATCTGAAACTAGAGGTGGTGAGGCTTCTCAGGTTAGCAAAACATTGCCGGAGTCTGAAAACATGGATTTGCAGACATTGGCAACAGCATGTGACTCGGTATCTGCAGCTAAAGCTGGTGAGGTGTTTCAGTTTAGTGAAGCATTGCTAAAGTCTGGAAACATGGATTTGCAAACATCTTCAACAGCAAAGGAATCAGAATCTGAAGCTAAAGTAGGTGATGCTTCTGGGGTTTGTGAGACATTGCTGGAGTCCAAAATCATGGATTTGCAACCATCTTCAACAGTTCAGGATACACAATCTATAACTAAAGTTGGTGATGATTCCCAGGATTGTGAGACATTGCCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

387

Amino Acids

40.71

Weight (kDa)

4.05

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 287, 797
AclI AACGTT 1 cut(s) 394
AcuI CTGAAG 4 cut(s) 540, 546, 624, 1032
AfaI GTAC 1 cut(s) 762
AgsI TTSAA 8 cut(s) 83, 323, 392, 646, 687, 792, 990, 1089
AjnI CCWGG 2 cut(s) 582, 1134
AjuI GAANNNNNNNTTGG 4 cut(s) 513, 545, 702, 734
Alw26I GTCTC 5 cut(s) 119, 632, 737, 1040, 1139
AlwNI CAGNNNCTG 3 cut(s) 104, 214, 1010
AoxI GGCC 2 cut(s) 101, 509
ApeKI GCWGC 4 cut(s) 308, 676, 781, 914
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 101, 510
AsuHPI GGTGA 6 cut(s) 248, 629, 839, 938, 1037, 1136
BaeGI GKGCMC 1 cut(s) 660
BbvI GCAGC 4 cut(s) 320, 688, 793, 926
BccI CCATC 2 cut(s) 793, 1090
BcgI CGANNNNNNTGC 2 cut(s) 885, 919
BciT130I CCWGG 2 cut(s) 584, 1136
BciVI GTATCC 1 cut(s) 1093
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 5 cut(s) 119, 632, 737, 1040, 1139
BfaI CTAG 2 cut(s) 150, 819
BfmI CTRYAG 3 cut(s) 105, 270, 912
BfuI GTATCC 1 cut(s) 1093
BisI GCNGC 5 cut(s) 287, 309, 677, 782, 915
BlsI GCNGC 5 cut(s) 288, 310, 678, 783, 916
Bme1390I CCNGG 2 cut(s) 584, 1136
BmgT120I GGNCC 2 cut(s) 101, 510
BmrFI CCNGG 2 cut(s) 584, 1136
BmsI GCATC 3 cut(s) 4, 145, 1018
BpmI CTGGAG 2 cut(s) 402, 1076
BpuEI CTTGAG 3 cut(s) 101, 444, 528
BsaJI CCNNGG 2 cut(s) 63, 1134
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 1154
Bse3DI GCAATG 6 cut(s) 473, 557, 851, 950, 1049, 1148
BseBI CCWGG 2 cut(s) 584, 1136
BseDI CCNNGG 2 cut(s) 63, 1134
BseGI GGATG 1 cut(s) 805
BseMI GCAATG 6 cut(s) 473, 557, 851, 950, 1049, 1148
BseMII CTCAG 6 cut(s) 84, 249, 344, 746, 756, 851
BseNI ACTGG 1 cut(s) 1154
BseRI GAGGAG 2 cut(s) 308, 437
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 4 cut(s) 320, 688, 793, 926
BshFI GGCC 2 cut(s) 103, 511
BsiSI CCGG 3 cut(s) 479, 508, 857
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 5 cut(s) 119, 632, 737, 1040, 1139
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 2 cut(s) 103, 511
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 2 cut(s) 205, 352
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 287, 797
BspANI GGCC 2 cut(s) 103, 511
BspCNI CTCAG 6 cut(s) 85, 250, 343, 745, 757, 850
BspMAI CTGCAG 1 cut(s) 916
BsrDI GCAATG 6 cut(s) 473, 557, 851, 950, 1049, 1148
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 1 cut(s) 1154
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 2 cut(s) 63, 1134
BssMI GATC 2 cut(s) 205, 352
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 584, 1136
Bst4CI ACNGT 3 cut(s) 229, 748, 1093
Bst6I CTCTTC 2 cut(s) 520, 604
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 6 cut(s) 93, 258, 330, 732, 765, 837
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 805
BstKTI GATC 2 cut(s) 208, 355
BstMAI GTCTC 5 cut(s) 119, 632, 737, 1040, 1139
BstMBI GATC 2 cut(s) 205, 352
BstMWI GCNNNNNNNGC 2 cut(s) 155, 920
BstNI CCWGG 2 cut(s) 584, 1136
BstNSI RCATGY 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 582, 1134
BstSFI CTRYAG 3 cut(s) 105, 270, 912
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 4 cut(s) 320, 688, 793, 926
BstXI CCANNNNNNTGG 1 cut(s) 1069
BsuI GTATCC 1 cut(s) 1093
BsuRI GGCC 2 cut(s) 103, 511
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 805
BtsI GCAGTG 2 cut(s) 76, 176
BtsIMutI CAGTG 3 cut(s) 76, 176, 753
Cac8I GCNNGC 1 cut(s) 480
CaiI CAGNNNCTG 3 cut(s) 104, 214, 1010
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 101, 510
CseI GACGC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 761
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 6 cut(s) 93, 258, 330, 732, 765, 837
DpnI GATC 2 cut(s) 207, 354
DpnII GATC 2 cut(s) 205, 352
Eam1104I CTCTTC 2 cut(s) 520, 604
EarI CTCTTC 2 cut(s) 520, 604
Eco130I CCWWGG 1 cut(s) 63
Eco57I CTGAAG 4 cut(s) 540, 546, 624, 1032
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 582, 1134
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaqI GGGAC 1 cut(s) 187
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 5 cut(s) 287, 309, 677, 782, 915
FokI GGATG 1 cut(s) 812
Fsp4HI GCNGC 5 cut(s) 287, 309, 677, 782, 915
FspBI CTAG 2 cut(s) 150, 819
GluI GCNGC 5 cut(s) 287, 309, 677, 782, 915
GsuI CTGGAG 2 cut(s) 402, 1076
HaeIII GGCC 2 cut(s) 103, 511
HapII CCGG 3 cut(s) 479, 508, 857
HgaI GACGC 1 cut(s) 561
HpaII CCGG 3 cut(s) 479, 508, 857
HphI GGTGA 6 cut(s) 248, 629, 839, 938, 1037, 1136
Hpy166II GTNNAC 1 cut(s) 413
Hpy188III TCNNGA 4 cut(s) 195, 419, 963, 1097
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 3 cut(s) 229, 748, 1093
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 7 cut(s) 562, 676, 781, 880, 914, 979, 1078
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 920
HpyF3I CTNAG 6 cut(s) 93, 258, 330, 732, 765, 837
HpySE526I ACGT 1 cut(s) 394
KroI GCCGGC 1 cut(s) 478
KroNI GCCGGC 1 cut(s) 480
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 205, 352
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 4 cut(s) 320, 688, 793, 926
LweI GCATC 3 cut(s) 4, 145, 1018
MaeI CTAG 2 cut(s) 150, 819
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 4 cut(s) 52, 120, 340, 899
MalI GATC 2 cut(s) 207, 354
MboI GATC 2 cut(s) 205, 352
MboII GAAGA 6 cut(s) 507, 591, 706, 780, 978, 1077
MhlI GDGCHC 1 cut(s) 660
MluCI AATT 3 cut(s) 36, 186, 363
MlyI GAGTC 6 cut(s) 137, 563, 812, 869, 896, 1067
MmeI TCCRAC 5 cut(s) 111, 279, 681, 732, 786
MroNI GCCGGC 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 3 cut(s) 59, 441, 465
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 3 cut(s) 479, 508, 857
MspR9I CCNGG 2 cut(s) 584, 1136
MvaI CCWGG 2 cut(s) 584, 1136
MwoI GCNNNNNNNGC 2 cut(s) 155, 920
NaeI GCCGGC 1 cut(s) 480
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 205, 352
NgoMIV GCCGGC 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 340, 899
NspI RCATGY 1 cut(s) 900
PdiI GCCGGC 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 6 cut(s) 5, 704, 809, 1001, 1007, 1130
PkrI GCNGC 5 cut(s) 288, 310, 678, 783, 916
PleI GAGTC 6 cut(s) 136, 562, 811, 868, 896, 1066
PpsI GAGTC 6 cut(s) 136, 562, 811, 868, 896, 1066
Psp1406I AACGTT 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 582, 1134
PspGI CCWGG 2 cut(s) 582, 1134
PspPI GGNCC 2 cut(s) 101, 510
PstI CTGCAG 1 cut(s) 916
PstNI CAGNNNCTG 3 cut(s) 104, 214, 1010
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
SaqAI TTAA 3 cut(s) 59, 441, 465
SatI GCNGC 5 cut(s) 287, 309, 677, 782, 915
Sau3AI GATC 2 cut(s) 205, 352
Sau96I GGNCC 2 cut(s) 101, 510
SchI GAGTC 6 cut(s) 137, 563, 812, 869, 896, 1067
ScrFI CCNGG 2 cut(s) 584, 1136
SduI GDGCHC 1 cut(s) 660
SfaNI GCATC 3 cut(s) 4, 145, 1018
SfcI CTRYAG 3 cut(s) 105, 270, 912
SmlI CTYRAG 3 cut(s) 116, 459, 543
SmoI CTYRAG 3 cut(s) 116, 459, 543
Sse9I AATT 3 cut(s) 36, 186, 363
SsiI CCGC 2 cut(s) 287, 797
SspMI CTAG 2 cut(s) 150, 819
StyD4I CCNGG 2 cut(s) 582, 1134
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 3 cut(s) 229, 748, 1093
TaiI ACGT 1 cut(s) 397
TasI AATT 3 cut(s) 36, 186, 363
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 6 cut(s) 5, 704, 809, 1001, 1007, 1130
Tru1I TTAA 3 cut(s) 59, 441, 465
Tru9I TTAA 3 cut(s) 59, 441, 465
TscAI CASTG 3 cut(s) 76, 183, 753
TseFI GTSAC 2 cut(s) 340, 899
TseI GCWGC 4 cut(s) 308, 676, 781, 914
Tsp45I GTSAC 2 cut(s) 340, 899
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 3 cut(s) 76, 183, 753
XceI RCATGY 1 cut(s) 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 150, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.