Chromatin structure-remodeling complex protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3896 |
| AarI | CACCTGC | 2 cut(s) | 5752, 6055 |
| Acc36I | ACCTGC | 3 cut(s) | 5752, 6055, 6302 |
| Acc65I | GGTACC | 1 cut(s) | 4004 |
| AccB1I | GGYRCC | 4 cut(s) | 3197, 4004, 4045, 5731 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 356, 659, 1070, 1976 |
| AccI | GTMKAC | 1 cut(s) | 458 |
| AccII | CGCG | 3 cut(s) | 3778, 4043, 5710 |
| AccIII | TCCGGA | 2 cut(s) | 2313, 4819 |
| AciI | CCGC | 7 cut(s) | 572, 3778, 4043, 4690, 5496, 5708, 5710 |
| AclI | AACGTT | 1 cut(s) | 4726 |
| AcoI | YGGCCR | 2 cut(s) | 4222, 4732 |
| AcuI | CTGAAG | 8 cut(s) | 774, 879, 1402, 1836, 2259, 3111, 3668, 4383 |
| AcyI | GRCGYC | 1 cut(s) | 5732 |
| AdeI | CACNNNGTG | 1 cut(s) | 5381 |
| AfeI | AGCGCT | 1 cut(s) | 2543 |
| AflII | CTTAAG | 3 cut(s) | 2531, 2974, 6328 |
| AflIII | ACRYGT | 2 cut(s) | 2201, 6553 |
| AgeI | ACCGGT | 1 cut(s) | 4661 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 454, 3632, 4882 |
| AhlI | ACTAGT | 2 cut(s) | 5153, 5198 |
| AjiI | CACGTC | 1 cut(s) | 2635 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1549, 1581 |
| AleI | CACNNNNGTG | 1 cut(s) | 5438 |
| Alw21I | GWGCWC | 4 cut(s) | 2234, 3407, 3789, 4302 |
| Alw44I | GTGCAC | 1 cut(s) | 3785 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1781, 5881, 6047 |
| Ama87I | CYCGRG | 3 cut(s) | 834, 3449, 5913 |
| Aor13HI | TCCGGA | 2 cut(s) | 2313, 4819 |
| Aor51HI | AGCGCT | 1 cut(s) | 2543 |
| ApaI | GGGCCC | 1 cut(s) | 3169 |
| ApaLI | GTGCAC | 1 cut(s) | 3785 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1651, 1683, 2027, 2059, 6478, 6510 |
| AseI | ATTAAT | 2 cut(s) | 186, 1881 |
| AsiGI | ACCGGT | 1 cut(s) | 4661 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 2552, 2573, 4260, 4622, 5482, 6232 |
| Asp718I | GGTACC | 1 cut(s) | 4004 |
| AspLEI | GCGC | 6 cut(s) | 1396, 2544, 3466, 3778, 5689, 5734 |
| AsuC2I | CCSGG | 4 cut(s) | 1143, 4072, 4736, 6702 |
| AsuII | TTCGAA | 1 cut(s) | 3808 |
| AsuNHI | GCTAGC | 1 cut(s) | 1928 |
| AvaI | CYCGRG | 3 cut(s) | 834, 3449, 5913 |
| AxyI | CCTNAGG | 2 cut(s) | 3204, 4009 |
| BaeGI | GKGCMC | 3 cut(s) | 3169, 3789, 4050 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5943, 5976 |
| BalI | TGGCCA | 1 cut(s) | 4224 |
| BamHI | GGATCC | 1 cut(s) | 6319 |
| BanI | GGYRCC | 4 cut(s) | 3197, 4004, 4045, 5731 |
| BanII | GRGCYC | 6 cut(s) | 841, 2234, 2301, 3169, 3407, 4213 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 4230, 4262, 6465, 6497, 6659, 6691 |
| BauI | CACGAG | 1 cut(s) | 6747 |
| BbsI | GAAGAC | 3 cut(s) | 3602, 3750, 5324 |
| Bbv12I | GWGCWC | 4 cut(s) | 2234, 3407, 3789, 4302 |
| BceAI | ACGGC | 4 cut(s) | 998, 1036, 2292, 4992 |
| BciVI | GTATCC | 2 cut(s) | 2606, 5083 |
| BclI | TGATCA | 3 cut(s) | 424, 3597, 5557 |
| BcnI | CCSGG | 4 cut(s) | 1143, 4072, 4736, 6702 |
| BcuI | ACTAGT | 2 cut(s) | 5153, 5198 |
| BfmI | CTRYAG | 6 cut(s) | 612, 4143, 4290, 5577, 6039, 6763 |
| BfoI | RGCGCY | 3 cut(s) | 2545, 3467, 5735 |
| BfrI | CTTAAG | 3 cut(s) | 2531, 2974, 6328 |
| BfuAI | ACCTGC | 3 cut(s) | 5752, 6055, 6302 |
| BfuI | GTATCC | 2 cut(s) | 2606, 5083 |
| BlpI | GCTNAGC | 5 cut(s) | 2853, 2919, 3561, 4296, 4998 |
| BmcAI | AGTACT | 4 cut(s) | 2353, 2882, 3621, 5491 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 454, 3632, 4882 |
| BmeT110I | CYCGRG | 3 cut(s) | 834, 3449, 5913 |
| BmgBI | CACGTC | 1 cut(s) | 2635 |
| BmrI | ACTGGG | 3 cut(s) | 1623, 3884, 5103 |
| BmtI | GCTAGC | 1 cut(s) | 1932 |
| BmuI | ACTGGG | 3 cut(s) | 1623, 3884, 5103 |
| BoxI | GACNNNNGTC | 1 cut(s) | 6425 |
| BpiI | GAAGAC | 3 cut(s) | 3602, 3750, 5324 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1649, 1681 |
| BpmI | CTGGAG | 4 cut(s) | 1311, 1704, 6060, 6497 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 2853, 2919, 3561, 4296, 4998 |
| Bpu14I | TTCGAA | 1 cut(s) | 3808 |
| BpuEI | CTTGAG | 5 cut(s) | 652, 969, 1135, 2389, 3935 |
| BpuMI | CCSGG | 4 cut(s) | 1143, 4072, 4736, 6702 |
| Bsa29I | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| BsaBI | GATNNNNATC | 3 cut(s) | 384, 2619, 4176 |
| BsaHI | GRCGYC | 1 cut(s) | 5732 |
| BsaI | GGTCTC | 4 cut(s) | 748, 1201, 1793, 4379 |
| BsaWI | WCCGGW | 6 cut(s) | 2313, 3351, 4661, 4819, 5679, 6280 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2295, 2325, 4564, 4594, 5172, 5202, 6582, 6612 |
| Bse118I | RCCGGY | 3 cut(s) | 1813, 2760, 4661 |
| Bse21I | CCTNAGG | 2 cut(s) | 3204, 4009 |
| Bse3DI | GCAATG | 5 cut(s) | 2635, 2878, 4641, 4781, 5832 |
| Bse8I | GATNNNNATC | 3 cut(s) | 384, 2619, 4176 |
| BseAI | TCCGGA | 2 cut(s) | 2313, 4819 |
| BseCI | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| BseJI | GATNNNNATC | 3 cut(s) | 384, 2619, 4176 |
| BseMI | GCAATG | 5 cut(s) | 2635, 2878, 4641, 4781, 5832 |
| BseRI | GAGGAG | 5 cut(s) | 3221, 3467, 3866, 6153, 6463 |
| BseSI | GKGCMC | 3 cut(s) | 3169, 3789, 4050 |
| BseYI | CCCAGC | 2 cut(s) | 962, 4306 |
| BsgI | GTGCAG | 6 cut(s) | 1293, 1320, 2678, 4404, 6366, 6737 |
| Bsh1236I | CGCG | 3 cut(s) | 3778, 4043, 5710 |
| BshNI | GGYRCC | 4 cut(s) | 3197, 4004, 4045, 5731 |
| BshTI | ACCGGT | 1 cut(s) | 4661 |
| BshVI | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2234, 3407, 3789, 4302 |
| BsiHKCI | CYCGRG | 3 cut(s) | 834, 3449, 5913 |
| BslFI | GGGAC | 8 cut(s) | 1001, 1622, 2064, 3048, 5123, 6592, 6717, 6745 |
| BsmBI | CGTCTC | 2 cut(s) | 2315, 3205 |
| BsmFI | GGGAC | 8 cut(s) | 1001, 1622, 2064, 3048, 5123, 6592, 6717, 6745 |
| BsmI | GAATGC | 2 cut(s) | 3367, 6352 |
| Bso31I | GGTCTC | 4 cut(s) | 748, 1201, 1793, 4379 |
| BsoBI | CYCGRG | 3 cut(s) | 834, 3449, 5913 |
| Bsp119I | TTCGAA | 1 cut(s) | 3808 |
| Bsp120I | GGGCCC | 1 cut(s) | 3165 |
| Bsp1286I | GDGCHC | 9 cut(s) | 841, 2234, 2301, 3169, 3407, 3789, 4050, 4213, 4302 |
| Bsp13I | TCCGGA | 2 cut(s) | 2313, 4819 |
| Bsp1407I | TGTACA | 2 cut(s) | 4549, 5188 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 2853, 2919, 3561, 4296, 4998 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspACI | CCGC | 7 cut(s) | 572, 3778, 4043, 4690, 5496, 5708, 5710 |
| BspDI | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| BspEI | TCCGGA | 2 cut(s) | 2313, 4819 |
| BspFNI | CGCG | 3 cut(s) | 3778, 4043, 5710 |
| BspHI | TCATGA | 2 cut(s) | 427, 6429 |
| BspMAI | CTGCAG | 4 cut(s) | 616, 4147, 4294, 6043 |
| BspMI | ACCTGC | 3 cut(s) | 5752, 6055, 6302 |
| BspOI | GCTAGC | 1 cut(s) | 1932 |
| BspQI | GCTCTTC | 3 cut(s) | 2239, 2436, 4764 |
| BspT104I | TTCGAA | 1 cut(s) | 3808 |
| BspT107I | GGYRCC | 4 cut(s) | 3197, 4004, 4045, 5731 |
| BspTI | CTTAAG | 3 cut(s) | 2531, 2974, 6328 |
| BspTNI | GGTCTC | 4 cut(s) | 748, 1201, 1793, 4379 |
| BsrDI | GCAATG | 5 cut(s) | 2635, 2878, 4641, 4781, 5832 |
| BsrFI | RCCGGY | 3 cut(s) | 1813, 2760, 4661 |
| BsrGI | TGTACA | 2 cut(s) | 4549, 5188 |
| BssAI | RCCGGY | 3 cut(s) | 1813, 2760, 4661 |
| BssNI | GRCGYC | 1 cut(s) | 5732 |
| BssSI | CACGAG | 1 cut(s) | 6747 |
| BssT1I | CCWWGG | 4 cut(s) | 171, 1961, 3771, 5968 |
| Bst2BI | CACGAG | 1 cut(s) | 6747 |
| BstACI | GRCGYC | 1 cut(s) | 5732 |
| BstAFI | CTTAAG | 3 cut(s) | 2531, 2974, 6328 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3571, 6047 |
| BstAUI | TGTACA | 2 cut(s) | 4549, 5188 |
| BstBI | TTCGAA | 1 cut(s) | 3808 |
| BstDSI | CCRYGG | 3 cut(s) | 171, 5008, 5708 |
| BstEII | GGTNACC | 2 cut(s) | 3347, 4984 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1482 |
| BstFNI | CGCG | 3 cut(s) | 3778, 4043, 5710 |
| BstH2I | RGCGCY | 3 cut(s) | 2545, 3467, 5735 |
| BstHHI | GCGC | 6 cut(s) | 1396, 2544, 3466, 3778, 5689, 5734 |
| BstNSI | RCATGY | 4 cut(s) | 1821, 2205, 4867, 6009 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 6425 |
| BstPI | GGTNACC | 2 cut(s) | 3347, 4984 |
| BstSFI | CTRYAG | 6 cut(s) | 612, 4143, 4290, 5577, 6039, 6763 |
| BstSLI | GKGCMC | 3 cut(s) | 3169, 3789, 4050 |
| BstUI | CGCG | 3 cut(s) | 3778, 4043, 5710 |
| BstV2I | GAAGAC | 3 cut(s) | 3602, 3750, 5324 |
| BstX2I | RGATCY | 6 cut(s) | 392, 1346, 1957, 5878, 5963, 6319 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 565, 1760, 5086, 5134 |
| BstYI | RGATCY | 6 cut(s) | 392, 1346, 1957, 5878, 5963, 6319 |
| Bsu15I | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3204, 4009 |
| BsuI | GTATCC | 2 cut(s) | 2606, 5083 |
| BsuTUI | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| BtgI | CCRYGG | 3 cut(s) | 171, 5008, 5708 |
| BtgZI | GCGATG | 1 cut(s) | 5066 |
| BtrI | CACGTC | 1 cut(s) | 2635 |
| BtsI | GCAGTG | 4 cut(s) | 758, 1403, 4471, 6087 |
| BveI | ACCTGC | 3 cut(s) | 5752, 6055, 6302 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1781, 5881, 6047 |
| CciI | TCATGA | 2 cut(s) | 427, 6429 |
| CfoI | GCGC | 6 cut(s) | 1396, 2544, 3466, 3778, 5689, 5734 |
| Cfr10I | RCCGGY | 3 cut(s) | 1813, 2760, 4661 |
| Cfr42I | CCGCGG | 1 cut(s) | 5711 |
| ClaI | ATCGAT | 3 cut(s) | 2613, 3339, 3928 |
| CseI | GACGC | 2 cut(s) | 497, 2254 |
| CsiI | ACCWGGT | 1 cut(s) | 5377 |
| CspAI | ACCGGT | 1 cut(s) | 4661 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2784, 2819 |
| DinI | GGCGCC | 1 cut(s) | 5733 |
| DraI | TTTAAA | 1 cut(s) | 2527 |
| DraIII | CACNNNGTG | 1 cut(s) | 5381 |
| DriI | GACNNNNNGTC | 3 cut(s) | 454, 3632, 4882 |
| EaeI | YGGCCR | 2 cut(s) | 4222, 4732 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 454, 3632, 4882 |
| Ecl136II | GAGCTC | 2 cut(s) | 2232, 3405 |
| Eco130I | CCWWGG | 4 cut(s) | 171, 1961, 3771, 5968 |
| Eco24I | GRGCYC | 6 cut(s) | 841, 2234, 2301, 3169, 3407, 4213 |
| Eco31I | GGTCTC | 4 cut(s) | 748, 1201, 1793, 4379 |
| Eco32I | GATATC | 3 cut(s) | 162, 2491, 2645 |
| Eco47III | AGCGCT | 1 cut(s) | 2543 |
| Eco53kI | GAGCTC | 2 cut(s) | 2232, 3405 |
| Eco57I | CTGAAG | 8 cut(s) | 774, 879, 1402, 1836, 2259, 3111, 3668, 4383 |
| Eco81I | CCTNAGG | 2 cut(s) | 3204, 4009 |
| Eco88I | CYCGRG | 3 cut(s) | 834, 3449, 5913 |
| Eco91I | GGTNACC | 2 cut(s) | 3347, 4984 |
| EcoICRI | GAGCTC | 2 cut(s) | 2232, 3405 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1482 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3101, 3166, 4711 |
| EcoO65I | GGTNACC | 2 cut(s) | 3347, 4984 |
| EcoRI | GAATTC | 1 cut(s) | 2457 |
| EcoRV | GATATC | 3 cut(s) | 162, 2491, 2645 |
| EcoT14I | CCWWGG | 4 cut(s) | 171, 1961, 3771, 5968 |
| EcoT22I | ATGCAT | 2 cut(s) | 5949, 6352 |
| EcoT38I | GRGCYC | 6 cut(s) | 841, 2234, 2301, 3169, 3407, 4213 |
| EgeI | GGCGCC | 1 cut(s) | 5733 |
| EheI | GGCGCC | 1 cut(s) | 5733 |
| ErhI | CCWWGG | 4 cut(s) | 171, 1961, 3771, 5968 |
| Esp3I | CGTCTC | 2 cut(s) | 2315, 3205 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2465, 2497 |
| FaqI | GGGAC | 8 cut(s) | 1001, 1622, 2064, 3048, 5123, 6592, 6717, 6745 |
| FauNDI | CATATG | 4 cut(s) | 944, 1585, 2040, 4765 |
| FbaI | TGATCA | 3 cut(s) | 424, 3597, 5557 |
| FblI | GTMKAC | 1 cut(s) | 458 |
| FriOI | GRGCYC | 6 cut(s) | 841, 2234, 2301, 3169, 3407, 4213 |
| GlaI | GCGC | 6 cut(s) | 1395, 2543, 3465, 3777, 5688, 5733 |
| GsaI | CCCAGC | 2 cut(s) | 966, 4310 |
| GsuI | CTGGAG | 4 cut(s) | 1311, 1704, 6060, 6497 |
| HaeII | RGCGCY | 3 cut(s) | 2545, 3467, 5735 |
| HgaI | GACGC | 2 cut(s) | 497, 2254 |
| HhaI | GCGC | 6 cut(s) | 1396, 2544, 3466, 3778, 5689, 5734 |
| Hin1I | GRCGYC | 1 cut(s) | 5732 |
| Hin6I | GCGC | 6 cut(s) | 1394, 2542, 3464, 3776, 5687, 5732 |
| HinP1I | GCGC | 6 cut(s) | 1394, 2542, 3464, 3776, 5687, 5732 |
| HincII | GTYRAC | 7 cut(s) | 785, 1056, 3423, 4498, 6420, 6497, 6644 |
| HindII | GTYRAC | 7 cut(s) | 785, 1056, 3423, 4498, 6420, 6497, 6644 |
| HindIII | AAGCTT | 4 cut(s) | 95, 210, 3722, 3911 |
| HpaI | GTTAAC | 1 cut(s) | 3423 |
| Hpy99I | CGWCG | 1 cut(s) | 6261 |
| HpyCH4IV | ACGT | 6 cut(s) | 2593, 2634, 3214, 4726, 5697, 6555 |
| HpySE526I | ACGT | 6 cut(s) | 2593, 2634, 3214, 4726, 5697, 6555 |
| Hsp92I | GRCGYC | 1 cut(s) | 5732 |
| HspAI | GCGC | 6 cut(s) | 1394, 2542, 3464, 3776, 5687, 5732 |
| KasI | GGCGCC | 1 cut(s) | 5731 |
| Kpn2I | TCCGGA | 2 cut(s) | 2313, 4819 |
| KpnI | GGTACC | 1 cut(s) | 4008 |
| KroI | GCCGGC | 1 cut(s) | 1813 |
| KroNI | GCCGGC | 1 cut(s) | 1815 |
| Ksp22I | TGATCA | 3 cut(s) | 424, 3597, 5557 |
| KspAI | GTTAAC | 1 cut(s) | 3423 |
| KspI | CCGCGG | 1 cut(s) | 5711 |
| LguI | GCTCTTC | 3 cut(s) | 2239, 2436, 4764 |
| MabI | ACCWGGT | 1 cut(s) | 5377 |
| MaeII | ACGT | 6 cut(s) | 2593, 2634, 3214, 4726, 5697, 6555 |
| MfeI | CAATTG | 3 cut(s) | 3759, 5229, 6635 |
| MflI | RGATCY | 6 cut(s) | 392, 1346, 1957, 5878, 5963, 6319 |
| MhlI | GDGCHC | 9 cut(s) | 841, 2234, 2301, 3169, 3407, 3789, 4050, 4213, 4302 |
| MlsI | TGGCCA | 1 cut(s) | 4224 |
| MluNI | TGGCCA | 1 cut(s) | 4224 |
| Mly113I | GGCGCC | 1 cut(s) | 5732 |
| MlyI | GAGTC | 6 cut(s) | 443, 4567, 4865, 5314, 5906, 6589 |
| MmeI | TCCRAC | 5 cut(s) | 6, 783, 2326, 5294, 5527 |
| Mox20I | TGGCCA | 1 cut(s) | 4224 |
| Mph1103I | ATGCAT | 2 cut(s) | 5949, 6352 |
| MroI | TCCGGA | 2 cut(s) | 2313, 4819 |
| MroNI | GCCGGC | 1 cut(s) | 1813 |
| MroXI | GAANNNNTTC | 6 cut(s) | 2552, 2573, 4260, 4622, 5482, 6232 |
| MscI | TGGCCA | 1 cut(s) | 4224 |
| MslI | CAYNNNNRTG | 7 cut(s) | 563, 3009, 4057, 5084, 5438, 5468, 5837 |
| Msp20I | TGGCCA | 1 cut(s) | 4224 |
| MspA1I | CMGCKG | 4 cut(s) | 3560, 4295, 5710, 6762 |
| MspCI | CTTAAG | 3 cut(s) | 2531, 2974, 6328 |
| MssI | GTTTAAAC | 1 cut(s) | 2527 |
| MunI | CAATTG | 3 cut(s) | 3759, 5229, 6635 |
| Mva1269I | GAATGC | 2 cut(s) | 3367, 6352 |
| MvnI | CGCG | 3 cut(s) | 3778, 4043, 5710 |
| NaeI | GCCGGC | 1 cut(s) | 1815 |
| NarI | GGCGCC | 1 cut(s) | 5732 |
| NciI | CCSGG | 4 cut(s) | 1143, 4072, 4736, 6702 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeI | CATATG | 4 cut(s) | 944, 1585, 2040, 4765 |
| NgoMIV | GCCGGC | 1 cut(s) | 1813 |
| NheI | GCTAGC | 1 cut(s) | 1928 |
| NsiI | ATGCAT | 2 cut(s) | 5949, 6352 |
| NspI | RCATGY | 4 cut(s) | 1821, 2205, 4867, 6009 |
| NspV | TTCGAA | 1 cut(s) | 3808 |
| OliI | CACNNNNGTG | 1 cut(s) | 5438 |
| PaeR7I | CTCGAG | 1 cut(s) | 3449 |
| PagI | TCATGA | 2 cut(s) | 427, 6429 |
| PaqCI | CACCTGC | 2 cut(s) | 5752, 6055 |
| PciI | ACATGT | 1 cut(s) | 2201 |
| PciSI | GCTCTTC | 3 cut(s) | 2239, 2436, 4764 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2599 |
| PctI | GAATGC | 2 cut(s) | 3367, 6352 |
| PdiI | GCCGGC | 1 cut(s) | 1815 |
| PdmI | GAANNNNTTC | 6 cut(s) | 2552, 2573, 4260, 4622, 5482, 6232 |
| PflFI | GACNNNGTC | 1 cut(s) | 6222 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 356, 659, 1070, 1976 |
| PfoI | TCCNGGA | 3 cut(s) | 1365, 6513, 6700 |
| PinAI | ACCGGT | 1 cut(s) | 4661 |
| PleI | GAGTC | 6 cut(s) | 443, 4567, 4864, 5314, 5905, 6588 |
| PluTI | GGCGCC | 1 cut(s) | 5735 |
| PmeI | GTTTAAAC | 1 cut(s) | 2527 |
| PpsI | GAGTC | 6 cut(s) | 443, 4567, 4864, 5314, 5905, 6588 |
| PpuMI | RGGWCCY | 1 cut(s) | 3101 |
| PscI | ACATGT | 1 cut(s) | 2201 |
| PshAI | GACNNNNGTC | 1 cut(s) | 6425 |
| PshBI | ATTAAT | 2 cut(s) | 186, 1881 |
| PsiI | TTATAA | 1 cut(s) | 3896 |
| Psp124BI | GAGCTC | 2 cut(s) | 2234, 3407 |
| Psp1406I | AACGTT | 1 cut(s) | 4726 |
| Psp5II | RGGWCCY | 1 cut(s) | 3101 |
| PspEI | GGTNACC | 2 cut(s) | 3347, 4984 |
| PspFI | CCCAGC | 2 cut(s) | 962, 4306 |
| PspOMI | GGGCCC | 1 cut(s) | 3165 |
| PspPPI | RGGWCCY | 1 cut(s) | 3101 |
| PstI | CTGCAG | 4 cut(s) | 616, 4147, 4294, 6043 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1781, 5881, 6047 |
| PsuI | RGATCY | 6 cut(s) | 392, 1346, 1957, 5878, 5963, 6319 |
| PsyI | GACNNNGTC | 1 cut(s) | 6222 |
| PvuII | CAGCTG | 3 cut(s) | 3560, 4295, 6762 |
| RseI | CAYNNNNRTG | 7 cut(s) | 563, 3009, 4057, 5084, 5438, 5468, 5837 |
| SacI | GAGCTC | 2 cut(s) | 2234, 3407 |
| SacII | CCGCGG | 1 cut(s) | 5711 |
| SapI | GCTCTTC | 3 cut(s) | 2239, 2436, 4764 |
| ScaI | AGTACT | 4 cut(s) | 2353, 2882, 3621, 5491 |
| SchI | GAGTC | 6 cut(s) | 443, 4567, 4865, 5314, 5906, 6589 |
| SduI | GDGCHC | 9 cut(s) | 841, 2234, 2301, 3169, 3407, 3789, 4050, 4213, 4302 |
| SexAI | ACCWGGT | 1 cut(s) | 5377 |
| SfcI | CTRYAG | 6 cut(s) | 612, 4143, 4290, 5577, 6039, 6763 |
| SfoI | GGCGCC | 1 cut(s) | 5733 |
| Sfr274I | CTCGAG | 1 cut(s) | 3449 |
| Sfr303I | CCGCGG | 1 cut(s) | 5711 |
| SfuI | TTCGAA | 1 cut(s) | 3808 |
| SgrBI | CCGCGG | 1 cut(s) | 5711 |
| SlaI | CTCGAG | 1 cut(s) | 3449 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 563, 3009, 4057, 5084, 5438, 5468, 5837 |
| SmlI | CTYRAG | 9 cut(s) | 667, 984, 1150, 2368, 2531, 2974, 3449, 3914, 6328 |
| SmoI | CTYRAG | 9 cut(s) | 667, 984, 1150, 2368, 2531, 2974, 3449, 3914, 6328 |
| SpeI | ACTAGT | 2 cut(s) | 5153, 5198 |
| SsiI | CCGC | 7 cut(s) | 572, 3778, 4043, 4690, 5496, 5708, 5710 |
| SspDI | GGCGCC | 1 cut(s) | 5731 |
| SspI | AATATT | 5 cut(s) | 700, 1027, 3490, 4161, 4379 |
| SstI | GAGCTC | 2 cut(s) | 2234, 3407 |
| StyI | CCWWGG | 4 cut(s) | 171, 1961, 3771, 5968 |
| TaiI | ACGT | 6 cut(s) | 2596, 2637, 3217, 4729, 5700, 6558 |
| TaqII | GACCGA | 2 cut(s) | 320, 3111 |
| TauI | GCSGC | 1 cut(s) | 5713 |
| TspGWI | ACGGA | 2 cut(s) | 3629, 5947 |
| Tth111I | GACNNNGTC | 1 cut(s) | 6222 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 356, 659, 1070, 1976 |
| Vha464I | CTTAAG | 3 cut(s) | 2531, 2974, 6328 |
| VneI | GTGCAC | 1 cut(s) | 3785 |
| VspI | ATTAAT | 2 cut(s) | 186, 1881 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1482 |
| XceI | RCATGY | 4 cut(s) | 1821, 2205, 4867, 6009 |
| XhoI | CTCGAG | 1 cut(s) | 3449 |
| XmiI | GTMKAC | 1 cut(s) | 458 |
| XmnI | GAANNNNTTC | 6 cut(s) | 2552, 2573, 4260, 4622, 5482, 6232 |
| ZrmI | AGTACT | 4 cut(s) | 2353, 2882, 3621, 5491 |
| Zsp2I | ATGCAT | 2 cut(s) | 5949, 6352 |