Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1030 - 1192 | 8.3e-13 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1034 - 1325 | 6.7e-91 | SNF2-related domain |
| Helicase_C | PF00271 | 1351 - 1464 | 7.1e-22 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1559 - 1655 | 1.2e-16 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4037 |
| AarI | CACCTGC | 2 cut(s) | 5890, 5999 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 9439 |
| Acc16I | TGCGCA | 2 cut(s) | 9818, 10353 |
| Acc36I | ACCTGC | 3 cut(s) | 5890, 5999, 7787 |
| Acc65I | GGTACC | 1 cut(s) | 4176 |
| AccB1I | GGYRCC | 4 cut(s) | 4176, 4819, 5869, 11095 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 359, 1040, 8506 |
| AccI | GTMKAC | 2 cut(s) | 2946, 7149 |
| AccII | CGCG | 1 cut(s) | 9344 |
| AccIII | TCCGGA | 2 cut(s) | 2430, 7391 |
| AcoI | YGGCCR | 6 cut(s) | 306, 4390, 6048, 6996, 8490, 9260 |
| AcvI | CACGTG | 1 cut(s) | 5957 |
| AcyI | GRCGYC | 2 cut(s) | 10580, 10679 |
| AfeI | AGCGCT | 2 cut(s) | 2660, 9957 |
| AflII | CTTAAG | 2 cut(s) | 2285, 3115 |
| AflIII | ACRYGT | 6 cut(s) | 2136, 2149, 6670, 6902, 8237, 9314 |
| AgeI | ACCGGT | 1 cut(s) | 5272 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 457, 3773 |
| AjiI | CACGTC | 3 cut(s) | 1775, 6905, 11056 |
| AleI | CACNNNNGTG | 1 cut(s) | 1140 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5065, 5097 |
| Alw44I | GTGCAC | 1 cut(s) | 3926 |
| Ama87I | CYCGRG | 3 cut(s) | 454, 935, 1665 |
| Aor13HI | TCCGGA | 2 cut(s) | 2430, 7391 |
| Aor51HI | AGCGCT | 2 cut(s) | 2660, 9957 |
| ApaI | GGGCCC | 3 cut(s) | 3310, 3342, 6086 |
| ApaLI | GTGCAC | 1 cut(s) | 3926 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3905, 3937 |
| AseI | ATTAAT | 3 cut(s) | 189, 2769, 3318 |
| AsiGI | ACCGGT | 1 cut(s) | 5272 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1444, 2450, 2669, 4790, 6478, 9918 |
| Asp718I | GGTACC | 1 cut(s) | 4176 |
| AspA2I | CCTAGG | 1 cut(s) | 3178 |
| AspLEI | GCGC | 8 cut(s) | 2661, 3607, 5230, 5899, 9819, 9958, 10354, 11041 |
| AsuC2I | CCSGG | 7 cut(s) | 503, 936, 937, 3337, 3919, 5512, 8306 |
| AsuII | TTCGAA | 2 cut(s) | 3949, 7076 |
| AvaI | CYCGRG | 3 cut(s) | 454, 935, 1665 |
| AvaII | GGWCC | 8 cut(s) | 331, 362, 3242, 4429, 5270, 6551, 7799, 9347 |
| AvrII | CCTAGG | 1 cut(s) | 3178 |
| AxyI | CCTNAGG | 2 cut(s) | 4181, 9171 |
| BaeGI | GKGCMC | 8 cut(s) | 966, 3310, 3342, 3930, 6086, 9027, 11007, 11098 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 555, 588 |
| BalI | TGGCCA | 3 cut(s) | 4392, 8492, 9262 |
| BamHI | GGATCC | 4 cut(s) | 2736, 2867, 6565, 6812 |
| BanI | GGYRCC | 4 cut(s) | 4176, 4819, 5869, 11095 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 8071, 8103 |
| BauI | CACGAG | 3 cut(s) | 5366, 6873, 10775 |
| BbrPI | CACGTG | 1 cut(s) | 5957 |
| BbsI | GAAGAC | 6 cut(s) | 255, 1558, 5588, 7974, 9024, 11058 |
| BceAI | ACGGC | 4 cut(s) | 2409, 3052, 5154, 5835 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 3939, 3973, 8139, 8173, 10632, 10666 |
| BciVI | GTATCC | 6 cut(s) | 2095, 2723, 5245, 6854, 6982, 8476 |
| BclI | TGATCA | 6 cut(s) | 427, 2101, 3703, 3738, 7261, 8803 |
| BcnI | CCSGG | 7 cut(s) | 503, 936, 937, 3337, 3919, 5512, 8306 |
| BfoI | RGCGCY | 4 cut(s) | 2662, 3608, 5231, 9959 |
| BfrI | CTTAAG | 2 cut(s) | 2285, 3115 |
| BfuAI | ACCTGC | 3 cut(s) | 5890, 5999, 7787 |
| BfuI | GTATCC | 6 cut(s) | 2095, 2723, 5245, 6854, 6982, 8476 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4762 |
| BglII | AGATCT | 2 cut(s) | 5381, 8563 |
| BlnI | CCTAGG | 1 cut(s) | 3178 |
| BlpI | GCTNAGC | 3 cut(s) | 870, 3697, 4464 |
| BmcAI | AGTACT | 1 cut(s) | 3762 |
| Bme18I | GGWCC | 8 cut(s) | 331, 362, 3242, 4429, 5270, 6551, 7799, 9347 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 457, 3773 |
| BmeT110I | CYCGRG | 3 cut(s) | 454, 935, 1665 |
| BmgBI | CACGTC | 3 cut(s) | 1775, 6905, 11056 |
| BmrI | ACTGGG | 7 cut(s) | 714, 1905, 1983, 2105, 4484, 6312, 6641 |
| BmuI | ACTGGG | 7 cut(s) | 714, 1905, 1983, 2105, 4484, 6312, 6641 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9345 |
| BpiI | GAAGAC | 6 cut(s) | 255, 1558, 5588, 7974, 9024, 11058 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 4913, 4945, 6817, 6849 |
| Bpu10I | CCTNAGC | 6 cut(s) | 2886, 5400, 8647, 10098, 10935, 11089 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 870, 3697, 4464 |
| Bpu14I | TTCGAA | 2 cut(s) | 3949, 7076 |
| BpuEI | CTTGAG | 9 cut(s) | 942, 1108, 1692, 3611, 4076, 7465, 7848, 9396, 10895 |
| BpuMI | CCSGG | 7 cut(s) | 503, 936, 937, 3337, 3919, 5512, 8306 |
| BsaAI | YACGTR | 2 cut(s) | 3411, 5957 |
| BsaBI | GATNNNNATC | 1 cut(s) | 6726 |
| BsaHI | GRCGYC | 2 cut(s) | 10580, 10679 |
| BsaI | GGTCTC | 3 cut(s) | 760, 6200, 10001 |
| BsaWI | WCCGGW | 6 cut(s) | 2430, 5272, 5817, 6985, 7391, 10192 |
| Bse118I | RCCGGY | 2 cut(s) | 1946, 5272 |
| Bse21I | CCTNAGG | 2 cut(s) | 4181, 9171 |
| Bse8I | GATNNNNATC | 1 cut(s) | 6726 |
| BseAI | TCCGGA | 2 cut(s) | 2430, 7391 |
| BseJI | GATNNNNATC | 1 cut(s) | 6726 |
| BseSI | GKGCMC | 8 cut(s) | 966, 3310, 3342, 3930, 6086, 9027, 11007, 11098 |
| BseYI | CCCAGC | 3 cut(s) | 2047, 2182, 6535 |
| Bsh1236I | CGCG | 1 cut(s) | 9344 |
| BshNI | GGYRCC | 4 cut(s) | 4176, 4819, 5869, 11095 |
| BshTI | ACCGGT | 1 cut(s) | 5272 |
| BsiHKCI | CYCGRG | 3 cut(s) | 454, 935, 1665 |
| BslFI | GGGAC | 9 cut(s) | 460, 518, 971, 4893, 4969, 5732, 6852, 7501, 9268 |
| BsmBI | CGTCTC | 7 cut(s) | 2432, 3755, 10194, 10389, 10587, 10686, 10979 |
| BsmFI | GGGAC | 9 cut(s) | 460, 518, 971, 4893, 4969, 5732, 6852, 7501, 9268 |
| BsmI | GAATGC | 8 cut(s) | 231, 1118, 3508, 4275, 7084, 7310, 7569, 8578 |
| Bso31I | GGTCTC | 3 cut(s) | 760, 6200, 10001 |
| BsoBI | CYCGRG | 3 cut(s) | 454, 935, 1665 |
| Bsp119I | TTCGAA | 2 cut(s) | 3949, 7076 |
| Bsp120I | GGGCCC | 3 cut(s) | 3306, 3338, 6082 |
| Bsp13I | TCCGGA | 2 cut(s) | 2430, 7391 |
| Bsp1407I | TGTACA | 3 cut(s) | 3135, 4717, 8389 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 870, 3697, 4464 |
| Bsp19I | CCATGG | 7 cut(s) | 174, 1170, 6078, 6330, 7284, 7617, 8826 |
| BspEI | TCCGGA | 2 cut(s) | 2430, 7391 |
| BspFNI | CGCG | 1 cut(s) | 9344 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspMAI | CTGCAG | 5 cut(s) | 4315, 4462, 5215, 5650, 8715 |
| BspMI | ACCTGC | 3 cut(s) | 5890, 5999, 7787 |
| BspQI | GCTCTTC | 2 cut(s) | 4932, 6258 |
| BspT104I | TTCGAA | 2 cut(s) | 3949, 7076 |
| BspT107I | GGYRCC | 4 cut(s) | 4176, 4819, 5869, 11095 |
| BspTI | CTTAAG | 2 cut(s) | 2285, 3115 |
| BspTNI | GGTCTC | 3 cut(s) | 760, 6200, 10001 |
| BsrFI | RCCGGY | 2 cut(s) | 1946, 5272 |
| BsrGI | TGTACA | 3 cut(s) | 3135, 4717, 8389 |
| BssAI | RCCGGY | 2 cut(s) | 1946, 5272 |
| BssNI | GRCGYC | 2 cut(s) | 10580, 10679 |
| BssSI | CACGAG | 3 cut(s) | 5366, 6873, 10775 |
| Bst2BI | CACGAG | 3 cut(s) | 5366, 6873, 10775 |
| BstACI | GRCGYC | 2 cut(s) | 10580, 10679 |
| BstAFI | CTTAAG | 2 cut(s) | 2285, 3115 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4024, 5882 |
| BstAUI | TGTACA | 3 cut(s) | 3135, 4717, 8389 |
| BstBAI | YACGTR | 2 cut(s) | 3411, 5957 |
| BstBI | TTCGAA | 2 cut(s) | 3949, 7076 |
| BstEII | GGTNACC | 2 cut(s) | 3854, 5146 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1044, 1761, 6090, 6113 |
| BstFNI | CGCG | 1 cut(s) | 9344 |
| BstH2I | RGCGCY | 4 cut(s) | 2662, 3608, 5231, 9959 |
| BstHHI | GCGC | 8 cut(s) | 2661, 3607, 5230, 5899, 9819, 9958, 10354, 11041 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9345 |
| BstPI | GGTNACC | 2 cut(s) | 3854, 5146 |
| BstSLI | GKGCMC | 8 cut(s) | 966, 3310, 3342, 3930, 6086, 9027, 11007, 11098 |
| BstSNI | TACGTA | 1 cut(s) | 3411 |
| BstUI | CGCG | 1 cut(s) | 9344 |
| BstV2I | GAAGAC | 6 cut(s) | 255, 1558, 5588, 7974, 9024, 11058 |
| BstX2I | RGATCY | 8 cut(s) | 395, 2736, 2867, 5381, 6565, 6812, 7196, 8563 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 2006, 3110, 6451, 10225, 10420, 11014 |
| BstYI | RGATCY | 8 cut(s) | 395, 2736, 2867, 5381, 6565, 6812, 7196, 8563 |
| Bsu36I | CCTNAGG | 2 cut(s) | 4181, 9171 |
| BsuI | GTATCC | 6 cut(s) | 2095, 2723, 5245, 6854, 6982, 8476 |
| BtgZI | GCGATG | 4 cut(s) | 3476, 4817, 10191, 10386 |
| BtrI | CACGTC | 3 cut(s) | 1775, 6905, 11056 |
| BtsI | GCAGTG | 6 cut(s) | 4639, 7104, 7297, 7397, 8708, 8839 |
| BveI | ACCTGC | 3 cut(s) | 5890, 5999, 7787 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CfoI | GCGC | 8 cut(s) | 2661, 3607, 5230, 5899, 9819, 9958, 10354, 11041 |
| Cfr10I | RCCGGY | 2 cut(s) | 1946, 5272 |
| Cfr9I | CCCGGG | 1 cut(s) | 935 |
| CseI | GACGC | 8 cut(s) | 7071, 8565, 9077, 9350, 9482, 10371, 10569, 10668 |
| CsiI | ACCWGGT | 2 cut(s) | 510, 670 |
| CspAI | ACCGGT | 1 cut(s) | 5272 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 5085, 5120, 5725, 5760 |
| DraI | TTTAAA | 2 cut(s) | 4614, 5676 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 9439 |
| DriI | GACNNNNNGTC | 2 cut(s) | 457, 3773 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 9439 |
| EaeI | YGGCCR | 6 cut(s) | 306, 4390, 6048, 6996, 8490, 9260 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 457, 3773 |
| EciI | GGCGGA | 1 cut(s) | 9629 |
| Ecl136II | GAGCTC | 5 cut(s) | 251, 2349, 2392, 5843, 10934 |
| Eco105I | TACGTA | 1 cut(s) | 3411 |
| Eco31I | GGTCTC | 3 cut(s) | 760, 6200, 10001 |
| Eco32I | GATATC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 8 cut(s) | 331, 362, 3242, 4429, 5270, 6551, 7799, 9347 |
| Eco47III | AGCGCT | 2 cut(s) | 2660, 9957 |
| Eco53kI | GAGCTC | 5 cut(s) | 251, 2349, 2392, 5843, 10934 |
| Eco72I | CACGTG | 1 cut(s) | 5957 |
| Eco81I | CCTNAGG | 2 cut(s) | 4181, 9171 |
| Eco88I | CYCGRG | 3 cut(s) | 454, 935, 1665 |
| Eco91I | GGTNACC | 2 cut(s) | 3854, 5146 |
| EcoICRI | GAGCTC | 5 cut(s) | 251, 2349, 2392, 5843, 10934 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1044, 1761, 6090, 6113 |
| EcoO109I | RGGNCCY | 8 cut(s) | 3242, 3307, 3339, 6083, 7322, 7799, 8864, 9347 |
| EcoO65I | GGTNACC | 2 cut(s) | 3854, 5146 |
| EcoRI | GAATTC | 4 cut(s) | 2574, 2594, 8009, 8752 |
| EcoRV | GATATC | 1 cut(s) | 165 |
| EcoT22I | ATGCAT | 2 cut(s) | 7894, 8614 |
| Esp3I | CGTCTC | 7 cut(s) | 2432, 3755, 10194, 10389, 10587, 10686, 10979 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1261, 1293, 2582, 2614, 2987, 3019 |
| FaqI | GGGAC | 9 cut(s) | 460, 518, 971, 4893, 4969, 5732, 6852, 7501, 9268 |
| FauI | CCCGC | 6 cut(s) | 88, 4905, 5434, 5747, 5855, 9337 |
| FauNDI | CATATG | 1 cut(s) | 4933 |
| FbaI | TGATCA | 6 cut(s) | 427, 2101, 3703, 3738, 7261, 8803 |
| FblI | GTMKAC | 2 cut(s) | 2946, 7149 |
| FspI | TGCGCA | 2 cut(s) | 9818, 10353 |
| GlaI | GCGC | 8 cut(s) | 2660, 3606, 5229, 5898, 9818, 9957, 10353, 11040 |
| GsaI | CCCAGC | 3 cut(s) | 2051, 2186, 6539 |
| HaeII | RGCGCY | 4 cut(s) | 2662, 3608, 5231, 9959 |
| HgaI | GACGC | 8 cut(s) | 7071, 8565, 9077, 9350, 9482, 10371, 10569, 10668 |
| HhaI | GCGC | 8 cut(s) | 2661, 3607, 5230, 5899, 9819, 9958, 10354, 11041 |
| Hin1I | GRCGYC | 2 cut(s) | 10580, 10679 |
| Hin6I | GCGC | 8 cut(s) | 2659, 3605, 5228, 5897, 9817, 9956, 10352, 11039 |
| HinP1I | GCGC | 8 cut(s) | 2659, 3605, 5228, 5897, 9817, 9956, 10352, 11039 |
| HincII | GTYRAC | 8 cut(s) | 1026, 1483, 1789, 3564, 6043, 7870, 8823, 10516 |
| HindII | GTYRAC | 8 cut(s) | 1026, 1483, 1789, 3564, 6043, 7870, 8823, 10516 |
| HindIII | AAGCTT | 4 cut(s) | 2861, 3863, 4052, 9237 |
| HpaI | GTTAAC | 5 cut(s) | 1789, 3564, 6043, 7870, 10516 |
| Hpy99I | CGWCG | 2 cut(s) | 6507, 11084 |
| Hsp92I | GRCGYC | 2 cut(s) | 10580, 10679 |
| HspAI | GCGC | 8 cut(s) | 2659, 3605, 5228, 5897, 9817, 9956, 10352, 11039 |
| Kpn2I | TCCGGA | 2 cut(s) | 2430, 7391 |
| KpnI | GGTACC | 1 cut(s) | 4180 |
| Ksp22I | TGATCA | 6 cut(s) | 427, 2101, 3703, 3738, 7261, 8803 |
| KspAI | GTTAAC | 5 cut(s) | 1789, 3564, 6043, 7870, 10516 |
| LguI | GCTCTTC | 2 cut(s) | 4932, 6258 |
| MabI | ACCWGGT | 2 cut(s) | 510, 670 |
| MfeI | CAATTG | 3 cut(s) | 2091, 5432, 6795 |
| MflI | RGATCY | 8 cut(s) | 395, 2736, 2867, 5381, 6565, 6812, 7196, 8563 |
| MlsI | TGGCCA | 3 cut(s) | 4392, 8492, 9262 |
| MluNI | TGGCCA | 3 cut(s) | 4392, 8492, 9262 |
| Mox20I | TGGCCA | 3 cut(s) | 4392, 8492, 9262 |
| Mph1103I | ATGCAT | 2 cut(s) | 7894, 8614 |
| MroI | TCCGGA | 2 cut(s) | 2430, 7391 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1444, 2450, 2669, 4790, 6478, 9918 |
| MscI | TGGCCA | 3 cut(s) | 4392, 8492, 9262 |
| Msp20I | TGGCCA | 3 cut(s) | 4392, 8492, 9262 |
| MspA1I | CMGCKG | 7 cut(s) | 1890, 3701, 4463, 6191, 6539, 7205, 8735 |
| MspCI | CTTAAG | 2 cut(s) | 2285, 3115 |
| MunI | CAATTG | 3 cut(s) | 2091, 5432, 6795 |
| Mva1269I | GAATGC | 8 cut(s) | 231, 1118, 3508, 4275, 7084, 7310, 7569, 8578 |
| MvnI | CGCG | 1 cut(s) | 9344 |
| NciI | CCSGG | 7 cut(s) | 503, 936, 937, 3337, 3919, 5512, 8306 |
| NcoI | CCATGG | 7 cut(s) | 174, 1170, 6078, 6330, 7284, 7617, 8826 |
| NdeI | CATATG | 1 cut(s) | 4933 |
| NmeAIII | GCCGAG | 1 cut(s) | 4741 |
| NsbI | TGCGCA | 2 cut(s) | 9818, 10353 |
| NsiI | ATGCAT | 2 cut(s) | 7894, 8614 |
| NspV | TTCGAA | 2 cut(s) | 3949, 7076 |
| OliI | CACNNNNGTG | 1 cut(s) | 1140 |
| PaeI | GCATGC | 2 cut(s) | 881, 1333 |
| PaeR7I | CTCGAG | 2 cut(s) | 454, 1665 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PaqCI | CACCTGC | 2 cut(s) | 5890, 5999 |
| PciI | ACATGT | 5 cut(s) | 2136, 2149, 6670, 8237, 9314 |
| PciSI | GCTCTTC | 2 cut(s) | 4932, 6258 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2716 |
| PctI | GAATGC | 8 cut(s) | 231, 1118, 3508, 4275, 7084, 7310, 7569, 8578 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1444, 2450, 2669, 4790, 6478, 9918 |
| PflFI | GACNNNGTC | 1 cut(s) | 8287 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 359, 1040, 8506 |
| PfoI | TCCNGGA | 1 cut(s) | 1039 |
| PinAI | ACCGGT | 1 cut(s) | 5272 |
| PmaCI | CACGTG | 1 cut(s) | 5957 |
| PmlI | CACGTG | 1 cut(s) | 5957 |
| Ppu21I | YACGTR | 2 cut(s) | 3411, 5957 |
| PpuMI | RGGWCCY | 3 cut(s) | 3242, 7799, 9347 |
| PscI | ACATGT | 5 cut(s) | 2136, 2149, 6670, 8237, 9314 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9345 |
| PshBI | ATTAAT | 3 cut(s) | 189, 2769, 3318 |
| PsiI | TTATAA | 1 cut(s) | 4037 |
| Psp124BI | GAGCTC | 5 cut(s) | 253, 2351, 2394, 5845, 10936 |
| Psp5II | RGGWCCY | 3 cut(s) | 3242, 7799, 9347 |
| PspCI | CACGTG | 1 cut(s) | 5957 |
| PspEI | GGTNACC | 2 cut(s) | 3854, 5146 |
| PspFI | CCCAGC | 3 cut(s) | 2047, 2182, 6535 |
| PspOMI | GGGCCC | 3 cut(s) | 3306, 3338, 6082 |
| PspPPI | RGGWCCY | 3 cut(s) | 3242, 7799, 9347 |
| PspXI | VCTCGAGB | 1 cut(s) | 454 |
| PstI | CTGCAG | 5 cut(s) | 4315, 4462, 5215, 5650, 8715 |
| PsuI | RGATCY | 8 cut(s) | 395, 2736, 2867, 5381, 6565, 6812, 7196, 8563 |
| PsyI | GACNNNGTC | 1 cut(s) | 8287 |
| PvuII | CAGCTG | 7 cut(s) | 1890, 3701, 4463, 6191, 6539, 7205, 8735 |
| SacI | GAGCTC | 5 cut(s) | 253, 2351, 2394, 5845, 10936 |
| SapI | GCTCTTC | 2 cut(s) | 4932, 6258 |
| ScaI | AGTACT | 1 cut(s) | 3762 |
| SexAI | ACCWGGT | 2 cut(s) | 510, 670 |
| Sfr274I | CTCGAG | 2 cut(s) | 454, 1665 |
| SfuI | TTCGAA | 2 cut(s) | 3949, 7076 |
| SinI | GGWCC | 8 cut(s) | 331, 362, 3242, 4429, 5270, 6551, 7799, 9347 |
| SlaI | CTCGAG | 2 cut(s) | 454, 1665 |
| SmaI | CCCGGG | 1 cut(s) | 937 |
| SnaBI | TACGTA | 1 cut(s) | 3411 |
| SphI | GCATGC | 2 cut(s) | 881, 1333 |
| SspI | AATATT | 3 cut(s) | 2017, 4329, 4547 |
| SstI | GAGCTC | 5 cut(s) | 253, 2351, 2394, 5845, 10936 |
| TaqII | GACCGA | 1 cut(s) | 4083 |
| TatI | WGTACW | 6 cut(s) | 371, 2214, 3135, 3760, 4717, 8389 |
| TspGWI | ACGGA | 8 cut(s) | 2486, 4352, 4964, 5044, 5398, 5586, 9131, 10501 |
| TspMI | CCCGGG | 1 cut(s) | 935 |
| Tth111I | GACNNNGTC | 1 cut(s) | 8287 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 359, 1040, 8506 |
| Vha464I | CTTAAG | 2 cut(s) | 2285, 3115 |
| VneI | GTGCAC | 1 cut(s) | 3926 |
| VpaK11BI | GGWCC | 8 cut(s) | 331, 362, 3242, 4429, 5270, 6551, 7799, 9347 |
| VspI | ATTAAT | 3 cut(s) | 189, 2769, 3318 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1044, 1761, 6090, 6113 |
| XbaI | TCTAGA | 3 cut(s) | 1280, 2063, 9370 |
| XhoI | CTCGAG | 2 cut(s) | 454, 1665 |
| XmaI | CCCGGG | 1 cut(s) | 935 |
| XmaJI | CCTAGG | 1 cut(s) | 3178 |
| XmiI | GTMKAC | 2 cut(s) | 2946, 7149 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1444, 2450, 2669, 4790, 6478, 9918 |
| ZrmI | AGTACT | 1 cut(s) | 3762 |
| Zsp2I | ATGCAT | 2 cut(s) | 7894, 8614 |