Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1034 - 1196 | 8.5e-13 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1038 - 1309 | 7.4e-87 | SNF2-related domain |
| Helicase_C | PF00271 | 1328 - 1441 | 7.3e-22 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1536 - 1632 | 1.6e-15 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3968 |
| AarI | CACCTGC | 2 cut(s) | 5821, 5930 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 9694 |
| Acc36I | ACCTGC | 4 cut(s) | 5821, 5930, 7718, 9590 |
| Acc65I | GGTACC | 1 cut(s) | 4107 |
| AccB1I | GGYRCC | 4 cut(s) | 4107, 4750, 5800, 11284 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 359, 1040, 8761 |
| AccI | GTMKAC | 2 cut(s) | 2958, 7080 |
| AccIII | TCCGGA | 2 cut(s) | 2442, 7322 |
| AciI | CCGC | 9 cut(s) | 81, 1995, 2100, 4460, 4789, 4843, 5671, 5779, 11288 |
| AclI | AACGTT | 1 cut(s) | 9957 |
| AcoI | YGGCCR | 5 cut(s) | 306, 4321, 6927, 8745, 9515 |
| AcvI | CACGTG | 1 cut(s) | 5888 |
| AcyI | GRCGYC | 2 cut(s) | 10733, 10832 |
| AdeI | CACNNNGTG | 1 cut(s) | 7472 |
| AfeI | AGCGCT | 2 cut(s) | 2672, 10212 |
| AflII | CTTAAG | 2 cut(s) | 2297, 3127 |
| AflIII | ACRYGT | 5 cut(s) | 2148, 2161, 6833, 8336, 9569 |
| AgeI | ACCGGT | 1 cut(s) | 5203 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| AjiI | CACGTC | 3 cut(s) | 1787, 6836, 11245 |
| AleI | CACNNNNGTG | 1 cut(s) | 1140 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4996, 5028 |
| Ama87I | CYCGRG | 3 cut(s) | 454, 935, 1677 |
| Aor13HI | TCCGGA | 2 cut(s) | 2442, 7322 |
| Aor51HI | AGCGCT | 2 cut(s) | 2672, 10212 |
| ApaI | GGGCCC | 3 cut(s) | 3322, 3354, 6017 |
| AseI | ATTAAT | 4 cut(s) | 189, 2781, 3330, 8883 |
| AsiGI | ACCGGT | 1 cut(s) | 5203 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1444, 2462, 2681, 4721, 6409, 10173 |
| Asp718I | GGTACC | 1 cut(s) | 4107 |
| AspA2I | CCTAGG | 1 cut(s) | 3190 |
| AspLEI | GCGC | 6 cut(s) | 2673, 3619, 5161, 5830, 10213, 11230 |
| AsuC2I | CCSGG | 5 cut(s) | 503, 936, 937, 3349, 5443 |
| AsuII | TTCGAA | 1 cut(s) | 7007 |
| AvaI | CYCGRG | 3 cut(s) | 454, 935, 1677 |
| AvaII | GGWCC | 9 cut(s) | 331, 362, 3254, 4360, 4811, 5201, 6482, 7730, 9602 |
| AvrII | CCTAGG | 1 cut(s) | 3190 |
| AxyI | CCTNAGG | 2 cut(s) | 4112, 9426 |
| BaeGI | GKGCMC | 7 cut(s) | 966, 3322, 3354, 6017, 9282, 11196, 11287 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 555, 588 |
| BalI | TGGCCA | 3 cut(s) | 4323, 8747, 9517 |
| BamHI | GGATCC | 4 cut(s) | 2748, 2879, 6496, 6743 |
| BanI | GGYRCC | 4 cut(s) | 4107, 4750, 5800, 11284 |
| BauI | CACGAG | 2 cut(s) | 5297, 6804 |
| BbrPI | CACGTG | 1 cut(s) | 5888 |
| BbsI | GAAGAC | 6 cut(s) | 255, 1570, 5519, 8073, 9279, 11247 |
| BceAI | ACGGC | 4 cut(s) | 2421, 3064, 5085, 5766 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 10686, 10720, 10785, 10819 |
| BciVI | GTATCC | 7 cut(s) | 2107, 2735, 5176, 6785, 6913, 8446, 8731 |
| BclI | TGATCA | 6 cut(s) | 427, 2113, 3715, 3750, 7192, 9058 |
| BcnI | CCSGG | 5 cut(s) | 503, 936, 937, 3349, 5443 |
| BfoI | RGCGCY | 4 cut(s) | 2674, 3620, 5162, 10214 |
| BfrI | CTTAAG | 2 cut(s) | 2297, 3127 |
| BfuAI | ACCTGC | 4 cut(s) | 5821, 5930, 7718, 9590 |
| BfuI | GTATCC | 7 cut(s) | 2107, 2735, 5176, 6785, 6913, 8446, 8731 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4693 |
| BglII | AGATCT | 2 cut(s) | 5312, 8818 |
| BlnI | CCTAGG | 1 cut(s) | 3190 |
| BlpI | GCTNAGC | 3 cut(s) | 870, 3709, 4395 |
| BmcAI | AGTACT | 2 cut(s) | 3774, 7789 |
| Bme18I | GGWCC | 9 cut(s) | 331, 362, 3254, 4360, 4811, 5201, 6482, 7730, 9602 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| BmeT110I | CYCGRG | 3 cut(s) | 454, 935, 1677 |
| BmgBI | CACGTC | 3 cut(s) | 1787, 6836, 11245 |
| BmrI | ACTGGG | 7 cut(s) | 714, 1917, 1995, 2117, 4415, 6243, 6572 |
| BmuI | ACTGGG | 7 cut(s) | 714, 1917, 1995, 2117, 4415, 6243, 6572 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9600 |
| BpiI | GAAGAC | 6 cut(s) | 255, 1570, 5519, 8073, 9279, 11247 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 4844, 4876, 6151, 6183, 6748, 6780 |
| Bpu10I | CCTNAGC | 6 cut(s) | 2898, 5331, 8902, 10353, 11124, 11278 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 870, 3709, 4395 |
| Bpu14I | TTCGAA | 1 cut(s) | 7007 |
| BpuEI | CTTGAG | 8 cut(s) | 942, 1108, 1704, 3623, 4007, 7396, 7779, 9651 |
| BpuMI | CCSGG | 5 cut(s) | 503, 936, 937, 3349, 5443 |
| BsaAI | YACGTR | 2 cut(s) | 3423, 5888 |
| BsaBI | GATNNNNATC | 1 cut(s) | 6657 |
| BsaHI | GRCGYC | 2 cut(s) | 10733, 10832 |
| BsaI | GGTCTC | 3 cut(s) | 760, 6131, 10256 |
| BsaWI | WCCGGW | 6 cut(s) | 2442, 5203, 5748, 6916, 7322, 10558 |
| Bse118I | RCCGGY | 1 cut(s) | 5203 |
| Bse21I | CCTNAGG | 2 cut(s) | 4112, 9426 |
| Bse8I | GATNNNNATC | 1 cut(s) | 6657 |
| BseAI | TCCGGA | 2 cut(s) | 2442, 7322 |
| BseJI | GATNNNNATC | 1 cut(s) | 6657 |
| BseSI | GKGCMC | 7 cut(s) | 966, 3322, 3354, 6017, 9282, 11196, 11287 |
| BseYI | CCCAGC | 3 cut(s) | 2059, 2194, 6466 |
| BshNI | GGYRCC | 4 cut(s) | 4107, 4750, 5800, 11284 |
| BshTI | ACCGGT | 1 cut(s) | 5203 |
| BsiHKCI | CYCGRG | 3 cut(s) | 454, 935, 1677 |
| BsmBI | CGTCTC | 7 cut(s) | 2444, 3767, 7988, 10449, 10542, 10740, 10839 |
| BsmI | GAATGC | 7 cut(s) | 231, 1118, 3520, 4206, 7015, 7500, 8833 |
| Bso31I | GGTCTC | 3 cut(s) | 760, 6131, 10256 |
| BsoBI | CYCGRG | 3 cut(s) | 454, 935, 1677 |
| Bsp119I | TTCGAA | 1 cut(s) | 7007 |
| Bsp120I | GGGCCC | 3 cut(s) | 3318, 3350, 6013 |
| Bsp13I | TCCGGA | 2 cut(s) | 2442, 7322 |
| Bsp1407I | TGTACA | 3 cut(s) | 3147, 4648, 8644 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 870, 3709, 4395 |
| Bsp19I | CCATGG | 7 cut(s) | 174, 1170, 6009, 6261, 7215, 7548, 9081 |
| BspACI | CCGC | 9 cut(s) | 81, 1995, 2100, 4460, 4789, 4843, 5671, 5779, 11288 |
| BspEI | TCCGGA | 2 cut(s) | 2442, 7322 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspMAI | CTGCAG | 5 cut(s) | 4246, 4393, 5146, 5581, 8970 |
| BspMI | ACCTGC | 4 cut(s) | 5821, 5930, 7718, 9590 |
| BspQI | GCTCTTC | 2 cut(s) | 4863, 6189 |
| BspT104I | TTCGAA | 1 cut(s) | 7007 |
| BspT107I | GGYRCC | 4 cut(s) | 4107, 4750, 5800, 11284 |
| BspTI | CTTAAG | 2 cut(s) | 2297, 3127 |
| BspTNI | GGTCTC | 3 cut(s) | 760, 6131, 10256 |
| BsrFI | RCCGGY | 1 cut(s) | 5203 |
| BsrGI | TGTACA | 3 cut(s) | 3147, 4648, 8644 |
| BssAI | RCCGGY | 1 cut(s) | 5203 |
| BssNI | GRCGYC | 2 cut(s) | 10733, 10832 |
| BssSI | CACGAG | 2 cut(s) | 5297, 6804 |
| Bst2BI | CACGAG | 2 cut(s) | 5297, 6804 |
| BstACI | GRCGYC | 2 cut(s) | 10733, 10832 |
| BstAFI | CTTAAG | 2 cut(s) | 2297, 3127 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3955, 5813 |
| BstAUI | TGTACA | 3 cut(s) | 3147, 4648, 8644 |
| BstBAI | YACGTR | 2 cut(s) | 3423, 5888 |
| BstBI | TTCGAA | 1 cut(s) | 7007 |
| BstDSI | CCRYGG | 9 cut(s) | 174, 1170, 4986, 5101, 6009, 6261, 7215, 7548, 9081 |
| BstEII | GGTNACC | 3 cut(s) | 3866, 5077, 7369 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1044, 1455, 1773, 6044 |
| BstH2I | RGCGCY | 4 cut(s) | 2674, 3620, 5162, 10214 |
| BstHHI | GCGC | 6 cut(s) | 2673, 3619, 5161, 5830, 10213, 11230 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9600 |
| BstPI | GGTNACC | 3 cut(s) | 3866, 5077, 7369 |
| BstSLI | GKGCMC | 7 cut(s) | 966, 3322, 3354, 6017, 9282, 11196, 11287 |
| BstSNI | TACGTA | 1 cut(s) | 3423 |
| BstV2I | GAAGAC | 6 cut(s) | 255, 1570, 5519, 8073, 9279, 11247 |
| BstX2I | RGATCY | 8 cut(s) | 395, 2748, 2879, 5312, 6496, 6743, 7127, 8818 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 2018, 3122, 6382, 10480, 10573, 11203 |
| BstYI | RGATCY | 8 cut(s) | 395, 2748, 2879, 5312, 6496, 6743, 7127, 8818 |
| Bsu36I | CCTNAGG | 2 cut(s) | 4112, 9426 |
| BsuI | GTATCC | 7 cut(s) | 2107, 2735, 5176, 6785, 6913, 8446, 8731 |
| BtgI | CCRYGG | 9 cut(s) | 174, 1170, 4986, 5101, 6009, 6261, 7215, 7548, 9081 |
| BtgZI | GCGATG | 2 cut(s) | 3488, 4748 |
| BtrI | CACGTC | 3 cut(s) | 1787, 6836, 11245 |
| BtsI | GCAGTG | 7 cut(s) | 4570, 7035, 7228, 7328, 8963, 9094, 11078 |
| BveI | ACCTGC | 4 cut(s) | 5821, 5930, 7718, 9590 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CfoI | GCGC | 6 cut(s) | 2673, 3619, 5161, 5830, 10213, 11230 |
| Cfr10I | RCCGGY | 1 cut(s) | 5203 |
| Cfr9I | CCCGGG | 1 cut(s) | 935 |
| CseI | GACGC | 9 cut(s) | 7002, 8373, 8820, 9332, 9605, 9737, 10524, 10722, 10821 |
| CsiI | ACCWGGT | 2 cut(s) | 510, 670 |
| CspAI | ACCGGT | 1 cut(s) | 5203 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5656, 5691 |
| DraI | TTTAAA | 2 cut(s) | 4545, 5607 |
| DraIII | CACNNNGTG | 1 cut(s) | 7472 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 9694 |
| DriI | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 9694 |
| EaeI | YGGCCR | 5 cut(s) | 306, 4321, 6927, 8745, 9515 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| Ecl136II | GAGCTC | 5 cut(s) | 251, 2361, 2404, 5774, 11123 |
| Eco105I | TACGTA | 1 cut(s) | 3423 |
| Eco31I | GGTCTC | 3 cut(s) | 760, 6131, 10256 |
| Eco32I | GATATC | 2 cut(s) | 165, 7893 |
| Eco47I | GGWCC | 9 cut(s) | 331, 362, 3254, 4360, 4811, 5201, 6482, 7730, 9602 |
| Eco47III | AGCGCT | 2 cut(s) | 2672, 10212 |
| Eco53kI | GAGCTC | 5 cut(s) | 251, 2361, 2404, 5774, 11123 |
| Eco72I | CACGTG | 1 cut(s) | 5888 |
| Eco81I | CCTNAGG | 2 cut(s) | 4112, 9426 |
| Eco88I | CYCGRG | 3 cut(s) | 454, 935, 1677 |
| Eco91I | GGTNACC | 3 cut(s) | 3866, 5077, 7369 |
| EcoICRI | GAGCTC | 5 cut(s) | 251, 2361, 2404, 5774, 11123 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1044, 1455, 1773, 6044 |
| EcoO109I | RGGNCCY | 9 cut(s) | 3254, 3319, 3351, 4811, 6014, 7253, 7730, 9119, 9602 |
| EcoO65I | GGTNACC | 3 cut(s) | 3866, 5077, 7369 |
| EcoRI | GAATTC | 5 cut(s) | 2586, 2606, 4721, 8108, 9007 |
| EcoRV | GATATC | 2 cut(s) | 165, 7893 |
| EcoT22I | ATGCAT | 3 cut(s) | 7825, 8427, 8869 |
| Esp3I | CGTCTC | 7 cut(s) | 2444, 3767, 7988, 10449, 10542, 10740, 10839 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1261, 1293, 2594, 2626, 2999, 3031, 7452, 7484 |
| FauI | CCCGC | 4 cut(s) | 88, 4836, 5678, 5786 |
| FbaI | TGATCA | 6 cut(s) | 427, 2113, 3715, 3750, 7192, 9058 |
| FblI | GTMKAC | 2 cut(s) | 2958, 7080 |
| GlaI | GCGC | 6 cut(s) | 2672, 3618, 5160, 5829, 10212, 11229 |
| GsaI | CCCAGC | 3 cut(s) | 2063, 2198, 6470 |
| HaeII | RGCGCY | 4 cut(s) | 2674, 3620, 5162, 10214 |
| HgaI | GACGC | 9 cut(s) | 7002, 8373, 8820, 9332, 9605, 9737, 10524, 10722, 10821 |
| HhaI | GCGC | 6 cut(s) | 2673, 3619, 5161, 5830, 10213, 11230 |
| Hin1I | GRCGYC | 2 cut(s) | 10733, 10832 |
| Hin6I | GCGC | 6 cut(s) | 2671, 3617, 5159, 5828, 10211, 11228 |
| HinP1I | GCGC | 6 cut(s) | 2671, 3617, 5159, 5828, 10211, 11228 |
| HincII | GTYRAC | 8 cut(s) | 1026, 1495, 1801, 3576, 5974, 7801, 9078, 10669 |
| HindII | GTYRAC | 8 cut(s) | 1026, 1495, 1801, 3576, 5974, 7801, 9078, 10669 |
| HindIII | AAGCTT | 4 cut(s) | 2873, 3875, 3983, 9492 |
| HpaI | GTTAAC | 5 cut(s) | 1801, 3576, 5974, 7801, 10669 |
| Hpy99I | CGWCG | 1 cut(s) | 6438 |
| Hsp92I | GRCGYC | 2 cut(s) | 10733, 10832 |
| HspAI | GCGC | 6 cut(s) | 2671, 3617, 5159, 5828, 10211, 11228 |
| Kpn2I | TCCGGA | 2 cut(s) | 2442, 7322 |
| KpnI | GGTACC | 1 cut(s) | 4111 |
| Ksp22I | TGATCA | 6 cut(s) | 427, 2113, 3715, 3750, 7192, 9058 |
| KspAI | GTTAAC | 5 cut(s) | 1801, 3576, 5974, 7801, 10669 |
| LguI | GCTCTTC | 2 cut(s) | 4863, 6189 |
| MabI | ACCWGGT | 2 cut(s) | 510, 670 |
| MfeI | CAATTG | 3 cut(s) | 2103, 5363, 6726 |
| MflI | RGATCY | 8 cut(s) | 395, 2748, 2879, 5312, 6496, 6743, 7127, 8818 |
| MlsI | TGGCCA | 3 cut(s) | 4323, 8747, 9517 |
| MluNI | TGGCCA | 3 cut(s) | 4323, 8747, 9517 |
| Mox20I | TGGCCA | 3 cut(s) | 4323, 8747, 9517 |
| Mph1103I | ATGCAT | 3 cut(s) | 7825, 8427, 8869 |
| MroI | TCCGGA | 2 cut(s) | 2442, 7322 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1444, 2462, 2681, 4721, 6409, 10173 |
| MscI | TGGCCA | 3 cut(s) | 4323, 8747, 9517 |
| Msp20I | TGGCCA | 3 cut(s) | 4323, 8747, 9517 |
| MspA1I | CMGCKG | 7 cut(s) | 1902, 3713, 4394, 6122, 6470, 7136, 8990 |
| MspCI | CTTAAG | 2 cut(s) | 2297, 3127 |
| MunI | CAATTG | 3 cut(s) | 2103, 5363, 6726 |
| Mva1269I | GAATGC | 7 cut(s) | 231, 1118, 3520, 4206, 7015, 7500, 8833 |
| NciI | CCSGG | 5 cut(s) | 503, 936, 937, 3349, 5443 |
| NcoI | CCATGG | 7 cut(s) | 174, 1170, 6009, 6261, 7215, 7548, 9081 |
| NmeAIII | GCCGAG | 1 cut(s) | 4672 |
| NsiI | ATGCAT | 3 cut(s) | 7825, 8427, 8869 |
| NspV | TTCGAA | 1 cut(s) | 7007 |
| OliI | CACNNNNGTG | 1 cut(s) | 1140 |
| PaeI | GCATGC | 2 cut(s) | 881, 1333 |
| PaeR7I | CTCGAG | 2 cut(s) | 454, 1677 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PaqCI | CACCTGC | 2 cut(s) | 5821, 5930 |
| PciI | ACATGT | 4 cut(s) | 2148, 2161, 8336, 9569 |
| PciSI | GCTCTTC | 2 cut(s) | 4863, 6189 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2728 |
| PctI | GAATGC | 7 cut(s) | 231, 1118, 3520, 4206, 7015, 7500, 8833 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1444, 2462, 2681, 4721, 6409, 10173 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 359, 1040, 8761 |
| PfoI | TCCNGGA | 1 cut(s) | 1039 |
| PinAI | ACCGGT | 1 cut(s) | 5203 |
| PmaCI | CACGTG | 1 cut(s) | 5888 |
| PmlI | CACGTG | 1 cut(s) | 5888 |
| Ppu21I | YACGTR | 2 cut(s) | 3423, 5888 |
| PpuMI | RGGWCCY | 4 cut(s) | 3254, 4811, 7730, 9602 |
| PscI | ACATGT | 4 cut(s) | 2148, 2161, 8336, 9569 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9600 |
| PshBI | ATTAAT | 4 cut(s) | 189, 2781, 3330, 8883 |
| PsiI | TTATAA | 1 cut(s) | 3968 |
| Psp124BI | GAGCTC | 5 cut(s) | 253, 2363, 2406, 5776, 11125 |
| Psp1406I | AACGTT | 1 cut(s) | 9957 |
| Psp5II | RGGWCCY | 4 cut(s) | 3254, 4811, 7730, 9602 |
| PspCI | CACGTG | 1 cut(s) | 5888 |
| PspEI | GGTNACC | 3 cut(s) | 3866, 5077, 7369 |
| PspFI | CCCAGC | 3 cut(s) | 2059, 2194, 6466 |
| PspOMI | GGGCCC | 3 cut(s) | 3318, 3350, 6013 |
| PspPPI | RGGWCCY | 4 cut(s) | 3254, 4811, 7730, 9602 |
| PspXI | VCTCGAGB | 1 cut(s) | 454 |
| PstI | CTGCAG | 5 cut(s) | 4246, 4393, 5146, 5581, 8970 |
| PsuI | RGATCY | 8 cut(s) | 395, 2748, 2879, 5312, 6496, 6743, 7127, 8818 |
| PvuII | CAGCTG | 7 cut(s) | 1902, 3713, 4394, 6122, 6470, 7136, 8990 |
| SacI | GAGCTC | 5 cut(s) | 253, 2363, 2406, 5776, 11125 |
| SapI | GCTCTTC | 2 cut(s) | 4863, 6189 |
| ScaI | AGTACT | 2 cut(s) | 3774, 7789 |
| SexAI | ACCWGGT | 2 cut(s) | 510, 670 |
| Sfr274I | CTCGAG | 2 cut(s) | 454, 1677 |
| SfuI | TTCGAA | 1 cut(s) | 7007 |
| SinI | GGWCC | 9 cut(s) | 331, 362, 3254, 4360, 4811, 5201, 6482, 7730, 9602 |
| SlaI | CTCGAG | 2 cut(s) | 454, 1677 |
| SmaI | CCCGGG | 1 cut(s) | 937 |
| SnaBI | TACGTA | 1 cut(s) | 3423 |
| SphI | GCATGC | 2 cut(s) | 881, 1333 |
| SsiI | CCGC | 9 cut(s) | 81, 1995, 2100, 4460, 4789, 4843, 5671, 5779, 11288 |
| SspI | AATATT | 3 cut(s) | 2029, 4260, 4478 |
| SstI | GAGCTC | 5 cut(s) | 253, 2363, 2406, 5776, 11125 |
| TaqII | GACCGA | 1 cut(s) | 4014 |
| TatI | WGTACW | 7 cut(s) | 371, 2226, 3147, 3772, 4648, 7787, 8644 |
| TspGWI | ACGGA | 8 cut(s) | 2498, 4283, 4895, 4975, 5329, 5517, 9386, 10654 |
| TspMI | CCCGGG | 1 cut(s) | 935 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 359, 1040, 8761 |
| Vha464I | CTTAAG | 2 cut(s) | 2297, 3127 |
| VpaK11BI | GGWCC | 9 cut(s) | 331, 362, 3254, 4360, 4811, 5201, 6482, 7730, 9602 |
| VspI | ATTAAT | 4 cut(s) | 189, 2781, 3330, 8883 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1044, 1455, 1773, 6044 |
| XbaI | TCTAGA | 3 cut(s) | 1280, 2075, 9625 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XhoI | CTCGAG | 2 cut(s) | 454, 1677 |
| XmaI | CCCGGG | 1 cut(s) | 935 |
| XmaJI | CCTAGG | 1 cut(s) | 3190 |
| XmiI | GTMKAC | 2 cut(s) | 2958, 7080 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1444, 2462, 2681, 4721, 6409, 10173 |
| ZrmI | AGTACT | 2 cut(s) | 3774, 7789 |
| Zsp2I | ATGCAT | 3 cut(s) | 7825, 8427, 8869 |