Chromatin structure-remodeling complex protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 3127, 4189 |
| Acc16I | TGCGCA | 1 cut(s) | 4969 |
| Acc36I | ACCTGC | 3 cut(s) | 3127, 4189, 6741 |
| Acc65I | GGTACC | 1 cut(s) | 6697 |
| AccB1I | GGYRCC | 7 cut(s) | 545, 1424, 2266, 2740, 3079, 3106, 6697 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2036, 4054 |
| AccII | CGCG | 4 cut(s) | 1126, 1422, 3085, 3918 |
| AccIII | TCCGGA | 1 cut(s) | 987 |
| AciI | CCGC | 8 cut(s) | 1126, 1422, 2065, 2871, 3083, 4095, 6719, 7151 |
| AclI | AACGTT | 1 cut(s) | 2101 |
| AclWI | GGATC | 8 cut(s) | 2774, 3261, 3333, 3764, 6068, 6169, 6522, 7161 |
| AcoI | YGGCCR | 5 cut(s) | 1597, 2107, 2643, 4678, 7173 |
| AcyI | GRCGYC | 3 cut(s) | 2741, 3107, 5575 |
| AdeI | CACNNNGTG | 1 cut(s) | 2756 |
| AflII | CTTAAG | 3 cut(s) | 322, 737, 3628 |
| AflIII | ACRYGT | 1 cut(s) | 3944 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 980, 2257 |
| AhlI | ACTAGT | 1 cut(s) | 2573 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4376, 4408 |
| AleI | CACNNNNGTG | 1 cut(s) | 6371 |
| Alw21I | GWGCWC | 7 cut(s) | 755, 1137, 1677, 4500, 4879, 5419, 6201 |
| Alw44I | GTGCAC | 2 cut(s) | 1133, 4875 |
| AlwI | GGATC | 8 cut(s) | 2774, 3261, 3333, 3764, 6068, 6169, 6522, 7161 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 3256, 4313, 5078 |
| Ama87I | CYCGRG | 4 cut(s) | 797, 2081, 2509, 3968 |
| Aor13HI | TCCGGA | 1 cut(s) | 987 |
| ApaI | GGGCCC | 2 cut(s) | 517, 2516 |
| ApaLI | GTGCAC | 2 cut(s) | 1133, 4875 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3815, 3847 |
| AseI | ATTAAT | 1 cut(s) | 413 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 1635, 1997, 2857, 3474, 3532, 6122, 6384, 6963 |
| Asp718I | GGTACC | 1 cut(s) | 6697 |
| AspA2I | CCTAGG | 1 cut(s) | 385 |
| AspLEI | GCGC | 6 cut(s) | 814, 1126, 2743, 3109, 4970, 6628 |
| AsuC2I | CCSGG | 1 cut(s) | 2111 |
| AvaI | CYCGRG | 4 cut(s) | 797, 2081, 2509, 3968 |
| AvrII | CCTAGG | 1 cut(s) | 385 |
| AxyI | CCTNAGG | 3 cut(s) | 552, 1388, 4422 |
| BaeGI | GKGCMC | 8 cut(s) | 517, 1137, 1429, 2516, 3051, 3082, 4879, 6378 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3318, 3351 |
| BalI | TGGCCA | 1 cut(s) | 4680 |
| BanI | GGYRCC | 7 cut(s) | 545, 1424, 2266, 2740, 3079, 3106, 6697 |
| BanII | GRGCYC | 8 cut(s) | 517, 755, 1588, 2516, 5419, 5564, 6201, 6443 |
| BbsI | GAAGAC | 9 cut(s) | 950, 1098, 1746, 3003, 4266, 4526, 4698, 5760, 6228 |
| Bbv12I | GWGCWC | 7 cut(s) | 755, 1137, 1677, 4500, 4879, 5419, 6201 |
| BbvCI | CCTCAGC | 1 cut(s) | 5295 |
| BceAI | ACGGC | 6 cut(s) | 2367, 2658, 3476, 3867, 5509, 7160 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3810, 3844, 4761, 4795 |
| BciVI | GTATCC | 1 cut(s) | 3896 |
| BclI | TGATCA | 5 cut(s) | 945, 2932, 5302, 5884, 6667 |
| BcnI | CCSGG | 1 cut(s) | 2111 |
| BcuI | ACTAGT | 1 cut(s) | 2573 |
| BfmI | CTRYAG | 6 cut(s) | 1518, 1665, 3414, 4236, 5535, 6828 |
| BfoI | RGCGCY | 3 cut(s) | 815, 2744, 3110 |
| BfrI | CTTAAG | 3 cut(s) | 322, 737, 3628 |
| BfuAI | ACCTGC | 3 cut(s) | 3127, 4189, 6741 |
| BfuI | GTATCC | 1 cut(s) | 3896 |
| BlnI | CCTAGG | 1 cut(s) | 385 |
| BlpI | GCTNAGC | 4 cut(s) | 201, 267, 1671, 6622 |
| BmcAI | AGTACT | 4 cut(s) | 230, 969, 2866, 5745 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 980, 2257 |
| BmeT110I | CYCGRG | 4 cut(s) | 797, 2081, 2509, 3968 |
| BmrI | ACTGGG | 2 cut(s) | 1232, 4565 |
| BmuI | ACTGGG | 2 cut(s) | 1232, 4565 |
| BpiI | GAAGAC | 9 cut(s) | 950, 1098, 1746, 3003, 4266, 4526, 4698, 5760, 6228 |
| BpmI | CTGGAG | 4 cut(s) | 3834, 4887, 6185, 7146 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3033, 5295 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 201, 267, 1671, 6622 |
| BpuEI | CTTGAG | 4 cut(s) | 1283, 3717, 5403, 6503 |
| BpuMI | CCSGG | 1 cut(s) | 2111 |
| BsaAI | YACGTR | 1 cut(s) | 3663 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1551, 5973 |
| BsaHI | GRCGYC | 3 cut(s) | 2741, 3107, 5575 |
| BsaWI | WCCGGW | 7 cut(s) | 699, 987, 1450, 2194, 3580, 5980, 6494 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 763, 793, 1939, 1969, 3433, 3463, 4098, 4128 |
| Bse21I | CCTNAGG | 3 cut(s) | 552, 1388, 4422 |
| Bse3DI | GCAATG | 6 cut(s) | 226, 2016, 2156, 2433, 3207, 5022 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1551, 5973 |
| BseAI | TCCGGA | 1 cut(s) | 987 |
| BseJI | GATNNNNATC | 2 cut(s) | 1551, 5973 |
| BseMI | GCAATG | 6 cut(s) | 226, 2016, 2156, 2433, 3207, 5022 |
| BseRI | GAGGAG | 7 cut(s) | 569, 815, 1214, 4971, 5867, 6003, 6596 |
| BseSI | GKGCMC | 8 cut(s) | 517, 1137, 1429, 2516, 3051, 3082, 4879, 6378 |
| BseYI | CCCAGC | 3 cut(s) | 1681, 4117, 6310 |
| BsgI | GTGCAG | 5 cut(s) | 26, 1779, 3429, 3666, 4176 |
| Bsh1236I | CGCG | 4 cut(s) | 1126, 1422, 3085, 3918 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3055 |
| BshNI | GGYRCC | 7 cut(s) | 545, 1424, 2266, 2740, 3079, 3106, 6697 |
| BsiEI | CGRYCG | 1 cut(s) | 3055 |
| BsiHKAI | GWGCWC | 7 cut(s) | 755, 1137, 1677, 4500, 4879, 5419, 6201 |
| BsiHKCI | CYCGRG | 4 cut(s) | 797, 2081, 2509, 3968 |
| BsiSI | CCGG | 9 cut(s) | 700, 988, 1451, 2110, 2195, 3581, 5012, 5981, 6495 |
| BsiWI | CGTACG | 1 cut(s) | 3663 |
| BslFI | GGGAC | 6 cut(s) | 1747, 3983, 4184, 4553, 4786, 5872 |
| BsmBI | CGTCTC | 2 cut(s) | 553, 5566 |
| BsmFI | GGGAC | 6 cut(s) | 1747, 3983, 4184, 4553, 4786, 5872 |
| BsmI | GAATGC | 6 cut(s) | 715, 1482, 3652, 4786, 6859, 7037 |
| BsoBI | CYCGRG | 4 cut(s) | 797, 2081, 2509, 3968 |
| Bsp120I | GGGCCC | 2 cut(s) | 513, 2512 |
| Bsp13I | TCCGGA | 1 cut(s) | 987 |
| Bsp1407I | TGTACA | 1 cut(s) | 2563 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 201, 267, 1671, 6622 |
| Bsp19I | CCATGG | 1 cut(s) | 4990 |
| BspACI | CCGC | 8 cut(s) | 1126, 1422, 2065, 2871, 3083, 4095, 6719, 7151 |
| BspEI | TCCGGA | 1 cut(s) | 987 |
| BspFNI | CGCG | 4 cut(s) | 1126, 1422, 3085, 3918 |
| BspHI | TCATGA | 4 cut(s) | 3766, 4819, 5158, 5398 |
| BspMAI | CTGCAG | 3 cut(s) | 1522, 1669, 3418 |
| BspMI | ACCTGC | 3 cut(s) | 3127, 4189, 6741 |
| BspPI | GGATC | 8 cut(s) | 2774, 3261, 3333, 3764, 6068, 6169, 6522, 7161 |
| BspQI | GCTCTTC | 1 cut(s) | 2139 |
| BspT107I | GGYRCC | 7 cut(s) | 545, 1424, 2266, 2740, 3079, 3106, 6697 |
| BspTI | CTTAAG | 3 cut(s) | 322, 737, 3628 |
| BsrDI | GCAATG | 6 cut(s) | 226, 2016, 2156, 2433, 3207, 5022 |
| BsrGI | TGTACA | 1 cut(s) | 2563 |
| BssNI | GRCGYC | 3 cut(s) | 2741, 3107, 5575 |
| BssT1I | CCWWGG | 8 cut(s) | 385, 2839, 3343, 4512, 4668, 4990, 5469, 6684 |
| BstACI | GRCGYC | 3 cut(s) | 2741, 3107, 5575 |
| BstAFI | CTTAAG | 3 cut(s) | 322, 737, 3628 |
| BstAUI | TGTACA | 1 cut(s) | 2563 |
| BstBAI | YACGTR | 1 cut(s) | 3663 |
| BstDSI | CCRYGG | 4 cut(s) | 2383, 3492, 4990, 7176 |
| BstEII | GGTNACC | 3 cut(s) | 695, 2359, 6916 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2913 |
| BstFNI | CGCG | 4 cut(s) | 1126, 1422, 3085, 3918 |
| BstH2I | RGCGCY | 3 cut(s) | 815, 2744, 3110 |
| BstHHI | GCGC | 6 cut(s) | 814, 1126, 2743, 3109, 4970, 6628 |
| BstMCI | CGRYCG | 1 cut(s) | 3055 |
| BstNSI | RCATGY | 5 cut(s) | 2242, 3384, 5065, 5204, 6910 |
| BstPI | GGTNACC | 3 cut(s) | 695, 2359, 6916 |
| BstSFI | CTRYAG | 6 cut(s) | 1518, 1665, 3414, 4236, 5535, 6828 |
| BstSLI | GKGCMC | 8 cut(s) | 517, 1137, 1429, 2516, 3051, 3082, 4879, 6378 |
| BstSNI | TACGTA | 1 cut(s) | 3663 |
| BstUI | CGCG | 4 cut(s) | 1126, 1422, 3085, 3918 |
| BstV2I | GAAGAC | 9 cut(s) | 950, 1098, 1746, 3003, 4266, 4526, 4698, 5760, 6228 |
| BstX2I | RGATCY | 3 cut(s) | 3253, 3338, 6161 |
| BstYI | RGATCY | 3 cut(s) | 3253, 3338, 6161 |
| Bsu36I | CCTNAGG | 3 cut(s) | 552, 1388, 4422 |
| BsuI | GTATCC | 1 cut(s) | 3896 |
| BtgI | CCRYGG | 4 cut(s) | 2383, 3492, 4990, 7176 |
| BtsI | GCAGTG | 1 cut(s) | 1846 |
| BveI | ACCTGC | 3 cut(s) | 3127, 4189, 6741 |
| CaiI | CAGNNNCTG | 3 cut(s) | 3256, 4313, 5078 |
| CciI | TCATGA | 4 cut(s) | 3766, 4819, 5158, 5398 |
| CfoI | GCGC | 6 cut(s) | 814, 1126, 2743, 3109, 4970, 6628 |
| CseI | GACGC | 2 cut(s) | 5583, 5765 |
| CsiI | ACCWGGT | 2 cut(s) | 2752, 3553 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 132, 167, 2295, 2330, 3474, 3509, 4167, 4202 |
| DinI | GGCGCC | 2 cut(s) | 2742, 3108 |
| DraI | TTTAAA | 2 cut(s) | 5115, 5685 |
| DraIII | CACNNNGTG | 1 cut(s) | 2756 |
| DriI | GACNNNNNGTC | 2 cut(s) | 980, 2257 |
| EaeI | YGGCCR | 5 cut(s) | 1597, 2107, 2643, 4678, 7173 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 980, 2257 |
| EciI | GGCGGA | 1 cut(s) | 6734 |
| Ecl136II | GAGCTC | 3 cut(s) | 753, 5417, 6199 |
| Eco105I | TACGTA | 1 cut(s) | 3663 |
| Eco130I | CCWWGG | 8 cut(s) | 385, 2839, 3343, 4512, 4668, 4990, 5469, 6684 |
| Eco147I | AGGCCT | 1 cut(s) | 4593 |
| Eco24I | GRGCYC | 8 cut(s) | 517, 755, 1588, 2516, 5419, 5564, 6201, 6443 |
| Eco53kI | GAGCTC | 3 cut(s) | 753, 5417, 6199 |
| Eco81I | CCTNAGG | 3 cut(s) | 552, 1388, 4422 |
| Eco88I | CYCGRG | 4 cut(s) | 797, 2081, 2509, 3968 |
| Eco91I | GGTNACC | 3 cut(s) | 695, 2359, 6916 |
| EcoICRI | GAGCTC | 3 cut(s) | 753, 5417, 6199 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2913 |
| EcoO109I | RGGNCCY | 5 cut(s) | 514, 2086, 2513, 4365, 4567 |
| EcoO65I | GGTNACC | 3 cut(s) | 695, 2359, 6916 |
| EcoRI | GAATTC | 1 cut(s) | 4384 |
| EcoT14I | CCWWGG | 8 cut(s) | 385, 2839, 3343, 4512, 4668, 4990, 5469, 6684 |
| EcoT22I | ATGCAT | 4 cut(s) | 3324, 3652, 6322, 6682 |
| EcoT38I | GRGCYC | 8 cut(s) | 517, 755, 1588, 2516, 5419, 5564, 6201, 6443 |
| EgeI | GGCGCC | 2 cut(s) | 2742, 3108 |
| EheI | GGCGCC | 2 cut(s) | 2742, 3108 |
| ErhI | CCWWGG | 8 cut(s) | 385, 2839, 3343, 4512, 4668, 4990, 5469, 6684 |
| Esp3I | CGTCTC | 2 cut(s) | 553, 5566 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3917, 3949, 5210, 5242 |
| FaqI | GGGAC | 6 cut(s) | 1747, 3983, 4184, 4553, 4786, 5872 |
| FauNDI | CATATG | 3 cut(s) | 619, 2140, 5873 |
| FbaI | TGATCA | 5 cut(s) | 945, 2932, 5302, 5884, 6667 |
| FriOI | GRGCYC | 8 cut(s) | 517, 755, 1588, 2516, 5419, 5564, 6201, 6443 |
| FspI | TGCGCA | 1 cut(s) | 4969 |
| GlaI | GCGC | 6 cut(s) | 813, 1125, 2742, 3108, 4969, 6627 |
| GsaI | CCCAGC | 3 cut(s) | 1685, 4121, 6314 |
| GsuI | CTGGAG | 4 cut(s) | 3834, 4887, 6185, 7146 |
| HaeII | RGCGCY | 3 cut(s) | 815, 2744, 3110 |
| HapII | CCGG | 9 cut(s) | 700, 988, 1451, 2110, 2195, 3581, 5012, 5981, 6495 |
| HgaI | GACGC | 2 cut(s) | 5583, 5765 |
| HhaI | GCGC | 6 cut(s) | 814, 1126, 2743, 3109, 4970, 6628 |
| Hin1I | GRCGYC | 3 cut(s) | 2741, 3107, 5575 |
| Hin6I | GCGC | 6 cut(s) | 812, 1124, 2741, 3107, 4968, 6626 |
| HinP1I | GCGC | 6 cut(s) | 812, 1124, 2741, 3107, 4968, 6626 |
| HincII | GTYRAC | 9 cut(s) | 771, 1873, 3720, 3834, 4083, 5059, 6364, 6730, 7168 |
| HindII | GTYRAC | 9 cut(s) | 771, 1873, 3720, 3834, 4083, 5059, 6364, 6730, 7168 |
| HindIII | AAGCTT | 5 cut(s) | 1070, 1259, 5151, 5772, 6327 |
| HpaI | GTTAAC | 2 cut(s) | 771, 7168 |
| HpaII | CCGG | 9 cut(s) | 700, 988, 1451, 2110, 2195, 3581, 5012, 5981, 6495 |
| Hpy99I | CGWCG | 1 cut(s) | 3090 |
| HpyCH4IV | ACGT | 7 cut(s) | 562, 1439, 2101, 3088, 3662, 3843, 3946 |
| HpySE526I | ACGT | 7 cut(s) | 562, 1439, 2101, 3088, 3662, 3843, 3946 |
| Hsp92I | GRCGYC | 3 cut(s) | 2741, 3107, 5575 |
| HspAI | GCGC | 6 cut(s) | 812, 1124, 2741, 3107, 4968, 6626 |
| KasI | GGCGCC | 2 cut(s) | 2740, 3106 |
| KflI | GGGWCCC | 1 cut(s) | 4567 |
| Kpn2I | TCCGGA | 1 cut(s) | 987 |
| KpnI | GGTACC | 1 cut(s) | 6701 |
| Ksp22I | TGATCA | 5 cut(s) | 945, 2932, 5302, 5884, 6667 |
| KspAI | GTTAAC | 2 cut(s) | 771, 7168 |
| LguI | GCTCTTC | 1 cut(s) | 2139 |
| MabI | ACCWGGT | 2 cut(s) | 2752, 3553 |
| MaeII | ACGT | 7 cut(s) | 562, 1439, 2101, 3088, 3662, 3843, 3946 |
| MfeI | CAATTG | 2 cut(s) | 1107, 2604 |
| MflI | RGATCY | 3 cut(s) | 3253, 3338, 6161 |
| MlsI | TGGCCA | 1 cut(s) | 4680 |
| MluNI | TGGCCA | 1 cut(s) | 4680 |
| Mly113I | GGCGCC | 2 cut(s) | 2741, 3107 |
| MmeI | TCCRAC | 8 cut(s) | 1374, 1480, 2669, 2902, 3455, 4673, 6615, 6978 |
| Mox20I | TGGCCA | 1 cut(s) | 4680 |
| Mph1103I | ATGCAT | 4 cut(s) | 3324, 3652, 6322, 6682 |
| MroI | TCCGGA | 1 cut(s) | 987 |
| MroXI | GAANNNNTTC | 8 cut(s) | 1635, 1997, 2857, 3474, 3532, 6122, 6384, 6963 |
| MscI | TGGCCA | 1 cut(s) | 4680 |
| MslI | CAYNNNNRTG | 9 cut(s) | 357, 2813, 3212, 3451, 4214, 5627, 6371, 6675, 7175 |
| Msp20I | TGGCCA | 1 cut(s) | 4680 |
| MspA1I | CMGCKG | 5 cut(s) | 908, 1670, 2423, 4235, 6631 |
| MspCI | CTTAAG | 3 cut(s) | 322, 737, 3628 |
| MspI | CCGG | 9 cut(s) | 700, 988, 1451, 2110, 2195, 3581, 5012, 5981, 6495 |
| MunI | CAATTG | 2 cut(s) | 1107, 2604 |
| Mva1269I | GAATGC | 6 cut(s) | 715, 1482, 3652, 4786, 6859, 7037 |
| MvnI | CGCG | 4 cut(s) | 1126, 1422, 3085, 3918 |
| NarI | GGCGCC | 2 cut(s) | 2741, 3107 |
| NciI | CCSGG | 1 cut(s) | 2111 |
| NcoI | CCATGG | 1 cut(s) | 4990 |
| NdeI | CATATG | 3 cut(s) | 619, 2140, 5873 |
| NmeAIII | GCCGAG | 1 cut(s) | 757 |
| NmuCI | GTSAC | 6 cut(s) | 191, 695, 2316, 5620, 5992, 6025 |
| NsbI | TGCGCA | 1 cut(s) | 4969 |
| NsiI | ATGCAT | 4 cut(s) | 3324, 3652, 6322, 6682 |
| NspI | RCATGY | 5 cut(s) | 2242, 3384, 5065, 5204, 6910 |
| OliI | CACNNNNGTG | 1 cut(s) | 6371 |
| PaeI | GCATGC | 1 cut(s) | 3384 |
| PaeR7I | CTCGAG | 1 cut(s) | 797 |
| PagI | TCATGA | 4 cut(s) | 3766, 4819, 5158, 5398 |
| PaqCI | CACCTGC | 2 cut(s) | 3127, 4189 |
| PceI | AGGCCT | 1 cut(s) | 4593 |
| PciSI | GCTCTTC | 1 cut(s) | 2139 |
| PctI | GAATGC | 6 cut(s) | 715, 1482, 3652, 4786, 6859, 7037 |
| PdmI | GAANNNNTTC | 8 cut(s) | 1635, 1997, 2857, 3474, 3532, 6122, 6384, 6963 |
| Pfl23II | CGTACG | 1 cut(s) | 3663 |
| PflFI | GACNNNGTC | 1 cut(s) | 3522 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2036, 4054 |
| PfoI | TCCNGGA | 2 cut(s) | 3850, 4864 |
| Ple19I | CGATCG | 1 cut(s) | 3055 |
| PluTI | GGCGCC | 2 cut(s) | 2744, 3110 |
| Ppu21I | YACGTR | 1 cut(s) | 3663 |
| PpuMI | RGGWCCY | 2 cut(s) | 4365, 4567 |
| PshBI | ATTAAT | 1 cut(s) | 413 |
| Psp124BI | GAGCTC | 3 cut(s) | 755, 5419, 6201 |
| Psp1406I | AACGTT | 1 cut(s) | 2101 |
| Psp5II | RGGWCCY | 2 cut(s) | 4365, 4567 |
| PspEI | GGTNACC | 3 cut(s) | 695, 2359, 6916 |
| PspFI | CCCAGC | 3 cut(s) | 1681, 4117, 6310 |
| PspLI | CGTACG | 1 cut(s) | 3663 |
| PspOMI | GGGCCC | 2 cut(s) | 513, 2512 |
| PspPPI | RGGWCCY | 2 cut(s) | 4365, 4567 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2010, 2042 |
| PstI | CTGCAG | 3 cut(s) | 1522, 1669, 3418 |
| PstNI | CAGNNNCTG | 3 cut(s) | 3256, 4313, 5078 |
| PsuI | RGATCY | 3 cut(s) | 3253, 3338, 6161 |
| PsyI | GACNNNGTC | 1 cut(s) | 3522 |
| PvuI | CGATCG | 1 cut(s) | 3055 |
| PvuII | CAGCTG | 5 cut(s) | 908, 1670, 2423, 4235, 6631 |
| RseI | CAYNNNNRTG | 9 cut(s) | 357, 2813, 3212, 3451, 4214, 5627, 6371, 6675, 7175 |
| SacI | GAGCTC | 3 cut(s) | 755, 5419, 6201 |
| SapI | GCTCTTC | 1 cut(s) | 2139 |
| ScaI | AGTACT | 4 cut(s) | 230, 969, 2866, 5745 |
| SexAI | ACCWGGT | 2 cut(s) | 2752, 3553 |
| SfcI | CTRYAG | 6 cut(s) | 1518, 1665, 3414, 4236, 5535, 6828 |
| SfoI | GGCGCC | 2 cut(s) | 2742, 3108 |
| Sfr274I | CTCGAG | 1 cut(s) | 797 |
| SlaI | CTCGAG | 1 cut(s) | 797 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 357, 2813, 3212, 3451, 4214, 5627, 6371, 6675, 7175 |
| SmlI | CTYRAG | 8 cut(s) | 322, 737, 797, 1262, 3628, 3732, 5418, 6482 |
| SmoI | CTYRAG | 8 cut(s) | 322, 737, 797, 1262, 3628, 3732, 5418, 6482 |
| SnaBI | TACGTA | 1 cut(s) | 3663 |
| SpeI | ACTAGT | 1 cut(s) | 2573 |
| SphI | GCATGC | 1 cut(s) | 3384 |
| SseBI | AGGCCT | 1 cut(s) | 4593 |
| SsiI | CCGC | 8 cut(s) | 1126, 1422, 2065, 2871, 3083, 4095, 6719, 7151 |
| SspDI | GGCGCC | 2 cut(s) | 2740, 3106 |
| SspI | AATATT | 6 cut(s) | 838, 1754, 2551, 4411, 5830, 7017 |
| SstI | GAGCTC | 3 cut(s) | 755, 5419, 6201 |
| StuI | AGGCCT | 1 cut(s) | 4593 |
| StyI | CCWWGG | 8 cut(s) | 385, 2839, 3343, 4512, 4668, 4990, 5469, 6684 |
| TaiI | ACGT | 7 cut(s) | 565, 1442, 2104, 3091, 3665, 3846, 3949 |
| TaqII | GACCGA | 1 cut(s) | 1758 |
| TatI | WGTACW | 7 cut(s) | 228, 967, 2563, 2864, 3455, 5743, 6475 |
| TseFI | GTSAC | 6 cut(s) | 191, 695, 2316, 5620, 5992, 6025 |
| Tsp45I | GTSAC | 6 cut(s) | 191, 695, 2316, 5620, 5992, 6025 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3522 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2036, 4054 |
| Vha464I | CTTAAG | 3 cut(s) | 322, 737, 3628 |
| VneI | GTGCAC | 2 cut(s) | 1133, 4875 |
| VspI | ATTAAT | 1 cut(s) | 413 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2913 |
| XbaI | TCTAGA | 3 cut(s) | 5927, 6388, 6790 |
| XceI | RCATGY | 5 cut(s) | 2242, 3384, 5065, 5204, 6910 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 4213, 4252, 6691 |
| XhoI | CTCGAG | 1 cut(s) | 797 |
| XmaJI | CCTAGG | 1 cut(s) | 385 |
| XmnI | GAANNNNTTC | 8 cut(s) | 1635, 1997, 2857, 3474, 3532, 6122, 6384, 6963 |
| ZrmI | AGTACT | 4 cut(s) | 230, 969, 2866, 5745 |
| Zsp2I | ATGCAT | 4 cut(s) | 3324, 3652, 6322, 6682 |