Rorug04G0165800
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001231
Physical Location & Seq
Forward (+)
29043851 .. 29044720
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0165800.1

Sequence Viewer

Length: 870 bp
ATGGCTTCAGAGTCTCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCGGGCCACCTTCTACCAGTGGGAGACATGGCTAAGGTGTTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCCCTCAATGCCATTCGAATCAAACCGATGATTGATCGCGCCATTGATTCCGGTCTCTCCCTTCATCTAGTTCAGTTTAGTTTGCCACTTGCTGAGTGTGGCCTCCCAGAGGGATGTGAAAACATGGACGCAGTCCCTGCAAGAAACTTGTTTTGGAATTTCTTGGAGGCAGGTAGCAGGCTGCAACAGCCAATAGAAGAGTTGCTTGAAACTGTAGAACCCCATCCGAGCTGCATAATTTCAGATAGACACCTGCCTTGGACAGCTGAGATTGCTCGAAAGTTTGGGATACCAAGGTATTTGTTTGATGGAACTAGTTGCTTCACTCTATTGTCTAACTATAATATAGAAACATCCAAGGTCCTAGAGAGTGTTTCAGGATCAGAGCCATTTCTAGTGCCTGGGTTGCCTGATGAGATTGAGATTACTTTAGTCCAGTTACCGGGGCACATGAATCTGGCTTCAGATGATTTCAGAGAGTTTTACAAAAAGATGAAGGAATCTGAAGAGGGAGCATGCGGGGTTGTTGTGAATAGCTTTGAGGATTTGGAACCAGAATATGTCAAAGAGTACAGAAAGGTTAGTAGAGTTTGGAGTATTGGTCCAGTGTCGCTATCCAACGACACTGAATTGGACAAAGCTCAGAGAGGAAACAAGGCCTCTAAAGAAAATGAAGGACAAATATTTGTGGAATGTATTCTGATATATCATCGTCTTAAATGGAGTGTTACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

289

Amino Acids

32.33

Weight (kDa)

5.03

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 293, 393
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 651
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 2 cut(s) 579, 657
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 2 cut(s) 241, 574
AgsI TTSAA 1 cut(s) 341
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 6 cut(s) 25, 363, 398, 669, 773, 867
AluI AGCT 6 cut(s) 25, 363, 398, 669, 773, 867
Alw26I GTCTC 4 cut(s) 18, 57, 72, 191
AlwI GGATC 1 cut(s) 520
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 3 cut(s) 58, 232, 789
ApeKI GCWGC 2 cut(s) 313, 363
ApoI RAATTY 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 58, 493, 734
AsuC2I CCSGG 2 cut(s) 57, 576
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 2 cut(s) 493, 734
BaeGI GKGCMC 1 cut(s) 582
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BbvI GCAGC 2 cut(s) 300, 350
BccI CCATC 2 cut(s) 363, 434
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 2 cut(s) 57, 576
BcoDI GTCTC 4 cut(s) 18, 57, 72, 191
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 4 cut(s) 200, 447, 497, 527
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 293, 393
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 2 cut(s) 314, 364
BlsI GCNGC 2 cut(s) 315, 365
Bme1390I CCNGG 3 cut(s) 57, 534, 576
Bme18I GGWCC 2 cut(s) 493, 734
BmgT120I GGNCC 3 cut(s) 58, 493, 734
BmiI GGNNCC 1 cut(s) 684
BmrFI CCNGG 3 cut(s) 57, 534, 576
Bpu10I CCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 57, 576
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 5 cut(s) 389, 425, 489, 533, 575
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 574
Bse1I ACTGG 3 cut(s) 71, 568, 737
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 5 cut(s) 389, 425, 489, 533, 575
BseGI GGATG 3 cut(s) 251, 355, 485
BseLI CCNNNNNNNGG 2 cut(s) 241, 574
BseMII CTCAG 3 cut(s) 216, 390, 788
BseNI ACTGG 3 cut(s) 71, 568, 737
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 2 cut(s) 300, 350
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 3 cut(s) 60, 234, 791
BsiSI CCGG 3 cut(s) 56, 183, 575
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 241, 574
BsmAI GTCTC 4 cut(s) 18, 57, 72, 191
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 3 cut(s) 60, 234, 791
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 3 cut(s) 19, 166, 512
BspACI CCGC 1 cut(s) 651
BspANI GGCC 3 cut(s) 60, 234, 791
BspCNI CTCAG 3 cut(s) 217, 391, 787
BspFNI CGCG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 684
BspMI ACCTGC 2 cut(s) 293, 393
BspPI GGATC 1 cut(s) 520
BspT104I TTCGAA 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 191
BsrI ACTGG 3 cut(s) 71, 568, 737
BssECI CCNNGG 5 cut(s) 389, 425, 489, 533, 575
BssMI GATC 3 cut(s) 19, 166, 512
BssT1I CCWWGG 3 cut(s) 389, 425, 489
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 324, 633
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 311, 649
BstDEI CTNAG 4 cut(s) 87, 225, 399, 774
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 3 cut(s) 251, 355, 485
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 3 cut(s) 22, 169, 515
BstMAI GTCTC 4 cut(s) 18, 57, 72, 191
BstMBI GATC 3 cut(s) 19, 166, 512
BstMWI GCNNNNNNNGC 4 cut(s) 269, 319, 404, 538
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 3 cut(s) 55, 532, 574
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 300, 350
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 3 cut(s) 60, 234, 791
BtsCI GGATG 3 cut(s) 251, 355, 485
BtsIMutI CAGTG 3 cut(s) 78, 744, 756
BveI ACCTGC 2 cut(s) 293, 393
Cac8I GCNNGC 2 cut(s) 311, 649
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 58, 493, 734
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 703
CviAII CATG 6 cut(s) 17, 82, 104, 256, 583, 648
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 4 cut(s) 87, 225, 399, 774
DpnI GATC 3 cut(s) 21, 168, 514
DpnII GATC 3 cut(s) 19, 166, 512
Eam1104I CTCTTC 2 cut(s) 324, 633
EarI CTCTTC 2 cut(s) 324, 633
Eco130I CCWWGG 3 cut(s) 389, 425, 489
Eco147I AGGCCT 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 493, 734
Eco57I CTGAAG 2 cut(s) 579, 657
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 3 cut(s) 389, 425, 489
ErhI CCWWGG 3 cut(s) 389, 425, 489
FaeI CATG 6 cut(s) 20, 85, 107, 259, 586, 651
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 251
FatI CATG 6 cut(s) 16, 81, 103, 255, 582, 647
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 314, 364
FokI GGATG 3 cut(s) 258, 342, 472
Fsp4HI GCNGC 2 cut(s) 314, 364
FspBI CTAG 4 cut(s) 200, 447, 497, 527
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 314, 364
HaeIII GGCC 3 cut(s) 60, 234, 791
HapII CCGG 3 cut(s) 56, 183, 575
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 173
Hin1II CATG 6 cut(s) 20, 85, 107, 259, 586, 651
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 5 cut(s) 11, 150, 179, 586, 632
HpaII CCGG 3 cut(s) 56, 183, 575
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 9 cut(s) 10, 360, 376, 517, 598, 608, 637, 777, 834
Hpy188III TCNNGA 2 cut(s) 17, 510
HpyAV CCTTC 4 cut(s) 74, 203, 622, 800
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 272, 316, 366
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 319, 404, 538
HpyF3I CTNAG 4 cut(s) 87, 225, 399, 774
Hsp92II CATG 6 cut(s) 20, 85, 107, 259, 586, 651
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 166, 512
LmnI GCTCC 1 cut(s) 644
Lsp1109I GCAGC 2 cut(s) 300, 350
MaeI CTAG 4 cut(s) 200, 447, 497, 527
MaeIII GTNAC 3 cut(s) 115, 570, 859
MalI GATC 3 cut(s) 21, 168, 514
MboI GATC 3 cut(s) 19, 166, 512
MboII GAAGA 2 cut(s) 341, 650
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 4 cut(s) 120, 289, 369, 761
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 8 cut(s) 146, 235, 245, 292, 634, 667, 773, 802
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 3 cut(s) 56, 183, 575
MspR9I CCNGG 3 cut(s) 57, 534, 576
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 269, 319, 404, 538
NciI CCSGG 2 cut(s) 57, 576
NdeII GATC 3 cut(s) 19, 166, 512
NlaIII CATG 6 cut(s) 20, 85, 107, 259, 586, 651
NlaIV GGNNCC 1 cut(s) 684
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 651
NspV TTCGAA 1 cut(s) 148
PaeI GCATGC 1 cut(s) 651
PagI TCATGA 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 393
PceI AGGCCT 1 cut(s) 791
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 4 cut(s) 150, 179, 586, 632
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 315, 365
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 684
PspPI GGNCC 3 cut(s) 58, 493, 734
PspPPI RGGWCCY 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 2 cut(s) 314, 364
Sau3AI GATC 3 cut(s) 19, 166, 512
Sau96I GGNCC 3 cut(s) 58, 493, 734
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 3 cut(s) 57, 534, 576
SduI GDGCHC 1 cut(s) 582
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 2 cut(s) 493, 734
SpeI ACTAGT 1 cut(s) 446
SphI GCATGC 1 cut(s) 651
Sse9I AATT 4 cut(s) 120, 289, 369, 761
SseBI AGGCCT 1 cut(s) 791
SsiI CCGC 1 cut(s) 651
SspI AATATT 1 cut(s) 816
SspMI CTAG 4 cut(s) 200, 447, 497, 527
StuI AGGCCT 1 cut(s) 791
StyD4I CCNGG 3 cut(s) 55, 532, 574
StyI CCWWGG 3 cut(s) 389, 425, 489
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 148, 409
TasI AATT 4 cut(s) 120, 289, 369, 761
TatI WGTACW 1 cut(s) 702
TfiI GAWTC 4 cut(s) 150, 179, 586, 632
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 3 cut(s) 78, 744, 763
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 313, 363
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 4 cut(s) 185, 599, 641, 819
TspRI CASTG 3 cut(s) 78, 744, 763
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 493, 734
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 651
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 4 cut(s) 200, 447, 497, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.