Chromatin structure-remodeling complex protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1034 - 1196 | 2.6e-12 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1038 - 1329 | 9.2e-91 | SNF2-related domain |
| Helicase_C | PF00271 | 1355 - 1468 | 1.2e-21 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1563 - 1659 | 7.2e-17 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2508, 4049 |
| AarI | CACCTGC | 2 cut(s) | 6007, 6116 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 6187, 9907 |
| Acc36I | ACCTGC | 3 cut(s) | 6007, 6116, 7904 |
| Acc65I | GGTACC | 1 cut(s) | 4188 |
| AccB1I | GGYRCC | 4 cut(s) | 4188, 4831, 5986, 11731 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 359, 1040, 7129, 8974 |
| AccI | GTMKAC | 2 cut(s) | 2958, 7266 |
| AccII | CGCG | 2 cut(s) | 83, 10287 |
| AccIII | TCCGGA | 2 cut(s) | 2442, 7508 |
| AciI | CCGC | 9 cut(s) | 81, 1995, 4541, 4870, 4924, 5965, 7885, 9596, 11735 |
| AclI | AACGTT | 1 cut(s) | 10170 |
| AcoI | YGGCCR | 4 cut(s) | 306, 4402, 8958, 9728 |
| AcvI | CACGTG | 2 cut(s) | 6074, 11015 |
| AcyI | GRCGYC | 3 cut(s) | 11048, 11147, 11246 |
| AfeI | AGCGCT | 2 cut(s) | 2672, 6922 |
| AflII | CTTAAG | 2 cut(s) | 2297, 3127 |
| AflIII | ACRYGT | 6 cut(s) | 2161, 6787, 7019, 8549, 9432, 9782 |
| AgeI | ACCGGT | 1 cut(s) | 5389 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| AjiI | CACGTC | 3 cut(s) | 1787, 7022, 11692 |
| AleI | CACNNNNGTG | 1 cut(s) | 1140 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 4729, 4761, 5077, 5109 |
| Alw44I | GTGCAC | 1 cut(s) | 3938 |
| Ama87I | CYCGRG | 4 cut(s) | 454, 935, 1677, 10973 |
| Aor13HI | TCCGGA | 2 cut(s) | 2442, 7508 |
| Aor51HI | AGCGCT | 2 cut(s) | 2672, 6922 |
| ApaI | GGGCCC | 3 cut(s) | 3322, 3354, 6203 |
| ApaLI | GTGCAC | 1 cut(s) | 3938 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3917, 3949 |
| AseI | ATTAAT | 3 cut(s) | 189, 2781, 3330 |
| AsiGI | ACCGGT | 1 cut(s) | 5389 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1444, 2462, 4802, 6595, 10386 |
| Asp718I | GGTACC | 1 cut(s) | 4188 |
| AspA2I | CCTAGG | 1 cut(s) | 3190 |
| AspLEI | GCGC | 7 cut(s) | 2673, 3619, 6016, 6923, 10287, 10426, 11677 |
| AsuC2I | CCSGG | 7 cut(s) | 503, 936, 937, 3349, 3931, 5629, 6435 |
| AsuII | TTCGAA | 2 cut(s) | 3961, 7193 |
| AvaI | CYCGRG | 4 cut(s) | 454, 935, 1677, 10973 |
| AvaII | GGWCC | 8 cut(s) | 331, 362, 3254, 4441, 5387, 6668, 7916, 9815 |
| AvrII | CCTAGG | 1 cut(s) | 3190 |
| AxyI | CCTNAGG | 3 cut(s) | 4193, 9639, 9963 |
| BaeGI | GKGCMC | 8 cut(s) | 966, 3322, 3354, 3942, 6203, 9495, 11643, 11734 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 555, 588 |
| BalI | TGGCCA | 3 cut(s) | 4404, 8960, 9730 |
| BamHI | GGATCC | 4 cut(s) | 2748, 2879, 6682, 6929 |
| BanI | GGYRCC | 4 cut(s) | 4188, 4831, 5986, 11731 |
| BauI | CACGAG | 2 cut(s) | 5483, 6990 |
| BbrPI | CACGTG | 2 cut(s) | 6074, 11015 |
| BbsI | GAAGAC | 8 cut(s) | 255, 1570, 5705, 8259, 9492, 9921, 11454, 11694 |
| BceAI | ACGGC | 7 cut(s) | 2421, 3064, 5166, 5952, 8574, 9331, 11443 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 3951, 3985, 11001, 11035, 11199, 11233 |
| BclI | TGATCA | 7 cut(s) | 427, 2113, 3715, 3750, 4240, 7378, 9271 |
| BcnI | CCSGG | 7 cut(s) | 503, 936, 937, 3349, 3931, 5629, 6435 |
| BfoI | RGCGCY | 3 cut(s) | 2674, 3620, 6924 |
| BfrI | CTTAAG | 2 cut(s) | 2297, 3127 |
| BfuAI | ACCTGC | 3 cut(s) | 6007, 6116, 7904 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4774 |
| BglII | AGATCT | 2 cut(s) | 5498, 9031 |
| BlnI | CCTAGG | 1 cut(s) | 3190 |
| BlpI | GCTNAGC | 3 cut(s) | 870, 3709, 4476 |
| BmcAI | AGTACT | 2 cut(s) | 3774, 5557 |
| Bme18I | GGWCC | 8 cut(s) | 331, 362, 3254, 4441, 5387, 6668, 7916, 9815 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| BmeT110I | CYCGRG | 4 cut(s) | 454, 935, 1677, 10973 |
| BmgBI | CACGTC | 3 cut(s) | 1787, 7022, 11692 |
| BmrI | ACTGGG | 6 cut(s) | 714, 1917, 1995, 2117, 4496, 6758 |
| BmuI | ACTGGG | 6 cut(s) | 714, 1917, 1995, 2117, 4496, 6758 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9813 |
| BpiI | GAAGAC | 8 cut(s) | 255, 1570, 5705, 8259, 9492, 9921, 11454, 11694 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 4925, 4957, 6337, 6369, 6934, 6966 |
| Bpu10I | CCTNAGC | 6 cut(s) | 2898, 5517, 7243, 9115, 11571, 11725 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 870, 3709, 4476 |
| Bpu14I | TTCGAA | 2 cut(s) | 3961, 7193 |
| BpuEI | CTTGAG | 9 cut(s) | 942, 1108, 1704, 3623, 4088, 7582, 7965, 9864, 11495 |
| BpuMI | CCSGG | 7 cut(s) | 503, 936, 937, 3349, 3931, 5629, 6435 |
| Bsa29I | ATCGAT | 1 cut(s) | 11349 |
| BsaAI | YACGTR | 3 cut(s) | 3423, 6074, 11015 |
| BsaBI | GATNNNNATC | 1 cut(s) | 6843 |
| BsaHI | GRCGYC | 3 cut(s) | 11048, 11147, 11246 |
| BsaI | GGTCTC | 3 cut(s) | 760, 6317, 10469 |
| BsaWI | WCCGGW | 5 cut(s) | 2442, 5389, 5934, 7102, 7508 |
| Bse118I | RCCGGY | 2 cut(s) | 1958, 5389 |
| Bse21I | CCTNAGG | 3 cut(s) | 4193, 9639, 9963 |
| Bse8I | GATNNNNATC | 1 cut(s) | 6843 |
| BseAI | TCCGGA | 2 cut(s) | 2442, 7508 |
| BseCI | ATCGAT | 1 cut(s) | 11349 |
| BseJI | GATNNNNATC | 1 cut(s) | 6843 |
| BseSI | GKGCMC | 8 cut(s) | 966, 3322, 3354, 3942, 6203, 9495, 11643, 11734 |
| BseYI | CCCAGC | 3 cut(s) | 2059, 2194, 6652 |
| Bsh1236I | CGCG | 2 cut(s) | 83, 10287 |
| BshNI | GGYRCC | 4 cut(s) | 4188, 4831, 5986, 11731 |
| BshTI | ACCGGT | 1 cut(s) | 5389 |
| BshVI | ATCGAT | 1 cut(s) | 11349 |
| BsiHKCI | CYCGRG | 4 cut(s) | 454, 935, 1677, 10973 |
| BslFI | GGGAC | 9 cut(s) | 460, 518, 971, 4905, 4981, 5849, 6969, 7618, 9736 |
| BsmFI | GGGAC | 9 cut(s) | 460, 518, 971, 4905, 4981, 5849, 6969, 7618, 9736 |
| BsmI | GAATGC | 8 cut(s) | 231, 1118, 3520, 4287, 7201, 7427, 7686, 9046 |
| Bso31I | GGTCTC | 3 cut(s) | 760, 6317, 10469 |
| BsoBI | CYCGRG | 4 cut(s) | 454, 935, 1677, 10973 |
| Bsp119I | TTCGAA | 2 cut(s) | 3961, 7193 |
| Bsp120I | GGGCCC | 3 cut(s) | 3318, 3350, 6199 |
| Bsp13I | TCCGGA | 2 cut(s) | 2442, 7508 |
| Bsp1407I | TGTACA | 3 cut(s) | 3147, 4729, 8857 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 870, 3709, 4476 |
| Bsp19I | CCATGG | 7 cut(s) | 174, 1170, 6195, 6447, 7401, 7734, 9294 |
| BspACI | CCGC | 9 cut(s) | 81, 1995, 4541, 4870, 4924, 5965, 7885, 9596, 11735 |
| BspDI | ATCGAT | 1 cut(s) | 11349 |
| BspEI | TCCGGA | 2 cut(s) | 2442, 7508 |
| BspFNI | CGCG | 2 cut(s) | 83, 10287 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspMAI | CTGCAG | 4 cut(s) | 4327, 4474, 5227, 9183 |
| BspMI | ACCTGC | 3 cut(s) | 6007, 6116, 7904 |
| BspQI | GCTCTTC | 2 cut(s) | 4944, 6375 |
| BspT104I | TTCGAA | 2 cut(s) | 3961, 7193 |
| BspT107I | GGYRCC | 4 cut(s) | 4188, 4831, 5986, 11731 |
| BspTI | CTTAAG | 2 cut(s) | 2297, 3127 |
| BspTNI | GGTCTC | 3 cut(s) | 760, 6317, 10469 |
| BsrFI | RCCGGY | 2 cut(s) | 1958, 5389 |
| BsrGI | TGTACA | 3 cut(s) | 3147, 4729, 8857 |
| BssAI | RCCGGY | 2 cut(s) | 1958, 5389 |
| BssNI | GRCGYC | 3 cut(s) | 11048, 11147, 11246 |
| BssSI | CACGAG | 2 cut(s) | 5483, 6990 |
| Bst2BI | CACGAG | 2 cut(s) | 5483, 6990 |
| BstACI | GRCGYC | 3 cut(s) | 11048, 11147, 11246 |
| BstAFI | CTTAAG | 2 cut(s) | 2297, 3127 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2324, 4036 |
| BstAUI | TGTACA | 3 cut(s) | 3147, 4729, 8857 |
| BstBAI | YACGTR | 3 cut(s) | 3423, 6074, 11015 |
| BstBI | TTCGAA | 2 cut(s) | 3961, 7193 |
| BstDSI | CCRYGG | 8 cut(s) | 174, 1170, 5182, 6195, 6447, 7401, 7734, 9294 |
| BstEII | GGTNACC | 2 cut(s) | 3866, 7555 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1455, 1773, 6207, 6230 |
| BstFNI | CGCG | 2 cut(s) | 83, 10287 |
| BstH2I | RGCGCY | 3 cut(s) | 2674, 3620, 6924 |
| BstHHI | GCGC | 7 cut(s) | 2673, 3619, 6016, 6923, 10287, 10426, 11677 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9813 |
| BstPI | GGTNACC | 2 cut(s) | 3866, 7555 |
| BstSLI | GKGCMC | 8 cut(s) | 966, 3322, 3354, 3942, 6203, 9495, 11643, 11734 |
| BstSNI | TACGTA | 1 cut(s) | 3423 |
| BstUI | CGCG | 2 cut(s) | 83, 10287 |
| BstV2I | GAAGAC | 8 cut(s) | 255, 1570, 5705, 8259, 9492, 9921, 11454, 11694 |
| BstX2I | RGATCY | 9 cut(s) | 395, 1043, 2748, 2879, 5498, 6682, 6929, 7313, 9031 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 2018, 3122, 6568, 10696, 10888, 11650 |
| BstYI | RGATCY | 9 cut(s) | 395, 1043, 2748, 2879, 5498, 6682, 6929, 7313, 9031 |
| Bsu15I | ATCGAT | 1 cut(s) | 11349 |
| Bsu36I | CCTNAGG | 3 cut(s) | 4193, 9639, 9963 |
| BsuTUI | ATCGAT | 1 cut(s) | 11349 |
| BtgI | CCRYGG | 8 cut(s) | 174, 1170, 5182, 6195, 6447, 7401, 7734, 9294 |
| BtgZI | GCGATG | 4 cut(s) | 3488, 4829, 10662, 10854 |
| BtrI | CACGTC | 3 cut(s) | 1787, 7022, 11692 |
| BtsI | GCAGTG | 6 cut(s) | 4651, 7221, 7414, 7514, 9176, 9307 |
| BveI | ACCTGC | 3 cut(s) | 6007, 6116, 7904 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CfoI | GCGC | 7 cut(s) | 2673, 3619, 6016, 6923, 10287, 10426, 11677 |
| Cfr10I | RCCGGY | 2 cut(s) | 1958, 5389 |
| Cfr9I | CCCGGG | 1 cut(s) | 935 |
| ClaI | ATCGAT | 1 cut(s) | 11349 |
| CseI | GACGC | 8 cut(s) | 7188, 8586, 9033, 9950, 10839, 11037, 11136, 11235 |
| CsiI | ACCWGGT | 2 cut(s) | 510, 670 |
| CspAI | ACCGGT | 1 cut(s) | 5389 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5842, 5877 |
| DraI | TTTAAA | 2 cut(s) | 4626, 5793 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 6187, 9907 |
| DriI | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 6187, 9907 |
| EaeI | YGGCCR | 4 cut(s) | 306, 4402, 8958, 9728 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 457, 3785 |
| Ecl136II | GAGCTC | 5 cut(s) | 251, 2361, 2404, 5960, 11570 |
| Eco105I | TACGTA | 1 cut(s) | 3423 |
| Eco31I | GGTCTC | 3 cut(s) | 760, 6317, 10469 |
| Eco32I | GATATC | 2 cut(s) | 165, 8079 |
| Eco47I | GGWCC | 8 cut(s) | 331, 362, 3254, 4441, 5387, 6668, 7916, 9815 |
| Eco47III | AGCGCT | 2 cut(s) | 2672, 6922 |
| Eco53kI | GAGCTC | 5 cut(s) | 251, 2361, 2404, 5960, 11570 |
| Eco72I | CACGTG | 2 cut(s) | 6074, 11015 |
| Eco81I | CCTNAGG | 3 cut(s) | 4193, 9639, 9963 |
| Eco88I | CYCGRG | 4 cut(s) | 454, 935, 1677, 10973 |
| Eco91I | GGTNACC | 2 cut(s) | 3866, 7555 |
| EcoICRI | GAGCTC | 5 cut(s) | 251, 2361, 2404, 5960, 11570 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1455, 1773, 6207, 6230 |
| EcoO109I | RGGNCCY | 8 cut(s) | 3254, 3319, 3351, 6200, 7439, 7916, 9332, 9815 |
| EcoO65I | GGTNACC | 2 cut(s) | 3866, 7555 |
| EcoRI | GAATTC | 3 cut(s) | 2586, 2606, 9220 |
| EcoRV | GATATC | 2 cut(s) | 165, 8079 |
| EcoT22I | ATGCAT | 3 cut(s) | 8011, 8640, 9082 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1261, 1293, 2594, 2626, 2999, 3031 |
| FaqI | GGGAC | 9 cut(s) | 460, 518, 971, 4905, 4981, 5849, 6969, 7618, 9736 |
| FauI | CCCGC | 4 cut(s) | 88, 4917, 5972, 7878 |
| FauNDI | CATATG | 1 cut(s) | 4945 |
| FbaI | TGATCA | 7 cut(s) | 427, 2113, 3715, 3750, 4240, 7378, 9271 |
| FblI | GTMKAC | 2 cut(s) | 2958, 7266 |
| GlaI | GCGC | 7 cut(s) | 2672, 3618, 6015, 6922, 10286, 10425, 11676 |
| GsaI | CCCAGC | 3 cut(s) | 2063, 2198, 6656 |
| HaeII | RGCGCY | 3 cut(s) | 2674, 3620, 6924 |
| HgaI | GACGC | 8 cut(s) | 7188, 8586, 9033, 9950, 10839, 11037, 11136, 11235 |
| HhaI | GCGC | 7 cut(s) | 2673, 3619, 6016, 6923, 10287, 10426, 11677 |
| Hin1I | GRCGYC | 3 cut(s) | 11048, 11147, 11246 |
| Hin6I | GCGC | 7 cut(s) | 2671, 3617, 6014, 6921, 10285, 10424, 11675 |
| HinP1I | GCGC | 7 cut(s) | 2671, 3617, 6014, 6921, 10285, 10424, 11675 |
| HincII | GTYRAC | 9 cut(s) | 1026, 1495, 1801, 3576, 6160, 7987, 9291, 9313, 10984 |
| HindII | GTYRAC | 9 cut(s) | 1026, 1495, 1801, 3576, 6160, 7987, 9291, 9313, 10984 |
| HindIII | AAGCTT | 6 cut(s) | 86, 2873, 3875, 4064, 7140, 9705 |
| HpaI | GTTAAC | 5 cut(s) | 1801, 3576, 6160, 7987, 10984 |
| Hpy99I | CGWCG | 2 cut(s) | 6624, 11720 |
| Hsp92I | GRCGYC | 3 cut(s) | 11048, 11147, 11246 |
| HspAI | GCGC | 7 cut(s) | 2671, 3617, 6014, 6921, 10285, 10424, 11675 |
| Kpn2I | TCCGGA | 2 cut(s) | 2442, 7508 |
| KpnI | GGTACC | 1 cut(s) | 4192 |
| Ksp22I | TGATCA | 7 cut(s) | 427, 2113, 3715, 3750, 4240, 7378, 9271 |
| KspAI | GTTAAC | 5 cut(s) | 1801, 3576, 6160, 7987, 10984 |
| LguI | GCTCTTC | 2 cut(s) | 4944, 6375 |
| MabI | ACCWGGT | 2 cut(s) | 510, 670 |
| MfeI | CAATTG | 3 cut(s) | 2103, 5549, 6912 |
| MflI | RGATCY | 9 cut(s) | 395, 1043, 2748, 2879, 5498, 6682, 6929, 7313, 9031 |
| MlsI | TGGCCA | 3 cut(s) | 4404, 8960, 9730 |
| MluNI | TGGCCA | 3 cut(s) | 4404, 8960, 9730 |
| Mox20I | TGGCCA | 3 cut(s) | 4404, 8960, 9730 |
| Mph1103I | ATGCAT | 3 cut(s) | 8011, 8640, 9082 |
| MroI | TCCGGA | 2 cut(s) | 2442, 7508 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1444, 2462, 4802, 6595, 10386 |
| MscI | TGGCCA | 3 cut(s) | 4404, 8960, 9730 |
| Msp20I | TGGCCA | 3 cut(s) | 4404, 8960, 9730 |
| MspA1I | CMGCKG | 7 cut(s) | 1902, 3713, 4475, 6308, 6656, 7322, 9203 |
| MspCI | CTTAAG | 2 cut(s) | 2297, 3127 |
| MunI | CAATTG | 3 cut(s) | 2103, 5549, 6912 |
| Mva1269I | GAATGC | 8 cut(s) | 231, 1118, 3520, 4287, 7201, 7427, 7686, 9046 |
| MvnI | CGCG | 2 cut(s) | 83, 10287 |
| NciI | CCSGG | 7 cut(s) | 503, 936, 937, 3349, 3931, 5629, 6435 |
| NcoI | CCATGG | 7 cut(s) | 174, 1170, 6195, 6447, 7401, 7734, 9294 |
| NdeI | CATATG | 1 cut(s) | 4945 |
| NmeAIII | GCCGAG | 1 cut(s) | 4753 |
| NsiI | ATGCAT | 3 cut(s) | 8011, 8640, 9082 |
| NspV | TTCGAA | 2 cut(s) | 3961, 7193 |
| OliI | CACNNNNGTG | 1 cut(s) | 1140 |
| PaeI | GCATGC | 2 cut(s) | 881, 1333 |
| PaeR7I | CTCGAG | 2 cut(s) | 454, 1677 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PaqCI | CACCTGC | 2 cut(s) | 6007, 6116 |
| PciI | ACATGT | 5 cut(s) | 2161, 6787, 8549, 9432, 9782 |
| PciSI | GCTCTTC | 2 cut(s) | 4944, 6375 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2728 |
| PctI | GAATGC | 8 cut(s) | 231, 1118, 3520, 4287, 7201, 7427, 7686, 9046 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1444, 2462, 4802, 6595, 10386 |
| PflFI | GACNNNGTC | 1 cut(s) | 8287 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 359, 1040, 7129, 8974 |
| PfoI | TCCNGGA | 2 cut(s) | 1039, 1611 |
| PinAI | ACCGGT | 1 cut(s) | 5389 |
| PmaCI | CACGTG | 2 cut(s) | 6074, 11015 |
| PmlI | CACGTG | 2 cut(s) | 6074, 11015 |
| Ppu21I | YACGTR | 3 cut(s) | 3423, 6074, 11015 |
| PpuMI | RGGWCCY | 3 cut(s) | 3254, 7916, 9815 |
| PscI | ACATGT | 5 cut(s) | 2161, 6787, 8549, 9432, 9782 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9813 |
| PshBI | ATTAAT | 3 cut(s) | 189, 2781, 3330 |
| PsiI | TTATAA | 2 cut(s) | 2508, 4049 |
| Psp124BI | GAGCTC | 5 cut(s) | 253, 2363, 2406, 5962, 11572 |
| Psp1406I | AACGTT | 1 cut(s) | 10170 |
| Psp5II | RGGWCCY | 3 cut(s) | 3254, 7916, 9815 |
| PspCI | CACGTG | 2 cut(s) | 6074, 11015 |
| PspEI | GGTNACC | 2 cut(s) | 3866, 7555 |
| PspFI | CCCAGC | 3 cut(s) | 2059, 2194, 6652 |
| PspOMI | GGGCCC | 3 cut(s) | 3318, 3350, 6199 |
| PspPPI | RGGWCCY | 3 cut(s) | 3254, 7916, 9815 |
| PspXI | VCTCGAGB | 1 cut(s) | 454 |
| PstI | CTGCAG | 4 cut(s) | 4327, 4474, 5227, 9183 |
| PsuI | RGATCY | 9 cut(s) | 395, 1043, 2748, 2879, 5498, 6682, 6929, 7313, 9031 |
| PsyI | GACNNNGTC | 1 cut(s) | 8287 |
| PvuII | CAGCTG | 7 cut(s) | 1902, 3713, 4475, 6308, 6656, 7322, 9203 |
| SacI | GAGCTC | 5 cut(s) | 253, 2363, 2406, 5962, 11572 |
| SapI | GCTCTTC | 2 cut(s) | 4944, 6375 |
| ScaI | AGTACT | 2 cut(s) | 3774, 5557 |
| SexAI | ACCWGGT | 2 cut(s) | 510, 670 |
| Sfr274I | CTCGAG | 2 cut(s) | 454, 1677 |
| SfuI | TTCGAA | 2 cut(s) | 3961, 7193 |
| SinI | GGWCC | 8 cut(s) | 331, 362, 3254, 4441, 5387, 6668, 7916, 9815 |
| SlaI | CTCGAG | 2 cut(s) | 454, 1677 |
| SmaI | CCCGGG | 1 cut(s) | 937 |
| SnaBI | TACGTA | 1 cut(s) | 3423 |
| SphI | GCATGC | 2 cut(s) | 881, 1333 |
| SsiI | CCGC | 9 cut(s) | 81, 1995, 4541, 4870, 4924, 5965, 7885, 9596, 11735 |
| SspI | AATATT | 2 cut(s) | 4341, 4559 |
| SstI | GAGCTC | 5 cut(s) | 253, 2363, 2406, 5962, 11572 |
| TaqII | GACCGA | 1 cut(s) | 4095 |
| TatI | WGTACW | 7 cut(s) | 371, 2226, 3147, 3772, 4729, 5555, 8857 |
| TspGWI | ACGGA | 6 cut(s) | 2498, 4364, 4976, 5703, 9599, 10097 |
| TspMI | CCCGGG | 1 cut(s) | 935 |
| Tth111I | GACNNNGTC | 1 cut(s) | 8287 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 359, 1040, 7129, 8974 |
| Vha464I | CTTAAG | 2 cut(s) | 2297, 3127 |
| VneI | GTGCAC | 1 cut(s) | 3938 |
| VpaK11BI | GGWCC | 8 cut(s) | 331, 362, 3254, 4441, 5387, 6668, 7916, 9815 |
| VspI | ATTAAT | 3 cut(s) | 189, 2781, 3330 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1455, 1773, 6207, 6230 |
| XbaI | TCTAGA | 3 cut(s) | 1280, 2075, 9838 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XhoI | CTCGAG | 2 cut(s) | 454, 1677 |
| XmaI | CCCGGG | 1 cut(s) | 935 |
| XmaJI | CCTAGG | 1 cut(s) | 3190 |
| XmiI | GTMKAC | 2 cut(s) | 2958, 7266 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1444, 2462, 4802, 6595, 10386 |
| ZrmI | AGTACT | 2 cut(s) | 3774, 5557 |
| Zsp2I | ATGCAT | 3 cut(s) | 8011, 8640, 9082 |