RLG00000030288
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001231
Physical Location & Seq
Forward (+)
59023344 .. 59024449
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030288

Sequence Viewer

Length: 612 bp
ATGCGTCAAAGGTTGGCAGTTGTTCCAGAAAATGCATCTTCAGAAAACATTGATTTCTCTGCATCCTCCTTAGCAACTGAAGGAAAAAAGGTAGATTGCTTACCCGGAAGTTTTGTTTGCAGCTCATTAACACTGCAGAGATCAAAAGAATCTCCAGCAGAGAAGAATTTGAGGAATTCTGACGATGCTTTTGGGAGAGTGGCAGAAATTGAATCTGAAAACATTGATCAGCTTCCCGTTACATTGACCATGGGCAGTGATAGTGTTGAAGGCTCATCTGAGGCAGGGCAGTCAGAACATGAATGCAAAGCTAGTGATGCTTTTCGAGTTTCTGTGACATTGGCAGAAAATGTGTCTGGAAACATGGATCAGCCCTTGGTTACCTTAAACAGTTGGTGTGATACTATGGAAGCCTCATCTGTGCCCAAGTCTCCTGAGGAGTCGGACTGTAAATTTAAAGTTGGTGATGTTTTTCAGATTACTGCAATGCTGCCAGAAATTGTTTCTGGTAACATAGATCAGCCTGTGGTTACTTTGACCGTTGGAGGTGATAGTGTTGCAGACTTACCTGAGGCACAACCTACGGCAGCTCCAAGCAACCAGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

204

Amino Acids

21.53

Weight (kDa)

4.28

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 3 cut(s) 166, 175, 452
AcuI CTGAAG 2 cut(s) 24, 99
AgsI TTSAA 2 cut(s) 212, 269
AluBI AGCT 4 cut(s) 123, 232, 311, 590
AluI AGCT 4 cut(s) 123, 232, 311, 590
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 120, 490, 587
ApoI RAATTY 3 cut(s) 166, 175, 452
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 476, 560
AxyI CCTNAGG 2 cut(s) 435, 570
BaeGI GKGCMC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 132, 477, 599
BceAI ACGGC 1 cut(s) 600
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 3 cut(s) 121, 491, 588
BlsI GCNGC 3 cut(s) 122, 492, 589
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 44, 71, 175, 307
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 249, 375
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bse21I CCTNAGG 2 cut(s) 435, 570
Bse3DI GCAATG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 249, 375
BseGI GGATG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 3 cut(s) 270, 426, 561
BseRI GAGGAG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 3 cut(s) 132, 477, 599
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 4 cut(s) 140, 226, 367, 517
Bsp19I CCATGG 1 cut(s) 249
BspCNI CTCAG 3 cut(s) 271, 427, 562
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 249, 375
BssMI GATC 4 cut(s) 140, 226, 367, 517
BssT1I CCWWGG 2 cut(s) 249, 375
Bst4CI ACNGT 3 cut(s) 392, 449, 541
BstDEI CTNAG 4 cut(s) 70, 279, 435, 570
BstDSI CCRYGG 1 cut(s) 249
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 4 cut(s) 143, 229, 370, 520
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 4 cut(s) 140, 226, 367, 517
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 132, 477, 599
Bsu36I CCTNAGG 2 cut(s) 435, 570
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 2 cut(s) 131, 262
BtsIMutI CAGTG 2 cut(s) 131, 262
CviAII CATG 3 cut(s) 250, 299, 364
CviJI RGCY 8 cut(s) 123, 232, 273, 311, 373, 413, 523, 590
CviKI_1 RGCY 8 cut(s) 123, 232, 273, 311, 373, 413, 523, 590
DdeI CTNAG 4 cut(s) 70, 279, 435, 570
DpnI GATC 4 cut(s) 142, 228, 369, 519
DpnII GATC 4 cut(s) 140, 226, 367, 517
DraI TTTAAA 1 cut(s) 457
Eco130I CCWWGG 2 cut(s) 249, 375
Eco57I CTGAAG 2 cut(s) 24, 99
Eco81I CCTNAGG 2 cut(s) 435, 570
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 249, 375
EcoT22I ATGCAT 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 249, 375
FaeI CATG 3 cut(s) 253, 302, 367
FaiI YATR 5 cut(s) 251, 300, 365, 407, 515
FatI CATG 3 cut(s) 249, 298, 363
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 121, 491, 588
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 121, 491, 588
FspBI CTAG 1 cut(s) 312
GluI GCNGC 3 cut(s) 121, 491, 588
GsuI CTGGAG 1 cut(s) 138
HapII CCGG 1 cut(s) 105
Hin1II CATG 3 cut(s) 253, 302, 367
HinfI GANTC 3 cut(s) 149, 212, 440
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 476, 560
Hpy188I TCNGA 7 cut(s) 43, 181, 217, 280, 295, 445, 477
Hpy188III TCNNGA 3 cut(s) 26, 357, 434
HpyAV CCTTC 2 cut(s) 74, 263
HpyCH4III ACNGT 3 cut(s) 392, 449, 541
HpyCH4V TGCA 7 cut(s) 35, 62, 120, 136, 306, 485, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 4 cut(s) 70, 279, 435, 570
Hsp92II CATG 3 cut(s) 253, 302, 367
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 140, 226, 367, 517
LmnI GCTCC 1 cut(s) 595
Lsp1109I GCAGC 3 cut(s) 132, 477, 599
LweI GCATC 4 cut(s) 44, 71, 175, 307
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 5 cut(s) 238, 334, 379, 509, 529
MalI GATC 4 cut(s) 142, 228, 369, 519
MboI GATC 4 cut(s) 140, 226, 367, 517
MboII GAAGA 2 cut(s) 30, 175
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 5 cut(s) 166, 175, 207, 452, 498
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 2 cut(s) 423, 523
MnlI CCTC 8 cut(s) 76, 165, 274, 424, 430, 539, 565, 597
Mph1103I ATGCAT 1 cut(s) 37
MseI TTAA 3 cut(s) 128, 386, 456
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 1 cut(s) 249
NdeII GATC 4 cut(s) 140, 226, 367, 517
NlaIII CATG 3 cut(s) 253, 302, 367
NmuCI GTSAC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 37
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 149, 212
PkrI GCNGC 3 cut(s) 122, 492, 589
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PspEI GGTNACC 1 cut(s) 379
PstI CTGCAG 1 cut(s) 138
SaqAI TTAA 3 cut(s) 128, 386, 456
SatI GCNGC 3 cut(s) 121, 491, 588
Sau3AI GATC 4 cut(s) 140, 226, 367, 517
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 4 cut(s) 44, 71, 175, 307
SfcI CTRYAG 1 cut(s) 134
Sse9I AATT 5 cut(s) 166, 175, 207, 452, 498
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 249, 375
TaaI ACNGT 3 cut(s) 392, 449, 541
TaqI TCGA 1 cut(s) 325
TasI AATT 5 cut(s) 166, 175, 207, 452, 498
TfiI GAWTC 2 cut(s) 149, 212
Tru1I TTAA 3 cut(s) 128, 386, 456
Tru9I TTAA 3 cut(s) 128, 386, 456
TscAI CASTG 2 cut(s) 138, 262
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 120, 490, 587
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 2 cut(s) 138, 262
XapI RAATTY 3 cut(s) 166, 175, 452
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.