FvH4_4g18100

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
22039690 .. 22041566
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18100.t1

Sequence Viewer

Length: 1731 bp
ATGACAATGCACTCGCACCCATTTGCCTTCTGCACCCTTTTCTTGATCTTCTTCAACCTTACCCTCTCCCGCCCTCTTCCCCCTCCACCGCCATCAACCAACATCACCCTCTTCGGCGACGCCTCCATAACCCACAACACCATCAGCCTCACTCGGCCGCTCTCCACCTGCCCAAGCACCAACGCCTCCGAGGTCAGGGCCGGCGGGGCCTTCTACTCCAACCCAGTTCGGGTCTATGACATCAATGGGAGCCATGTCGGGATTGATATCAATAGTGTTGAGACTGTGGCTTCTGTTAATGCTGGGGTTGATTTGGTGGGTGGGAAGGAGATTACTGCTTGGGTTGAGTATAGAGATGATCTGAAGTTGATTCGGGTCGGGGTAGGGGTTTCACCGGAGAATAAGCCTCCGAGTCCGGTTATTGTCGCCCAGATTGACCTTTCCGGTCAATTTAGTGAGTTGGCGTATGTGGGATTAACTGCAGCAAATGGGAGGGGCGGCTCTTCTGCCTACATTGTTAAGAATTGGATGTTTAAGACTTTCAATGGGTCTCTGCCTTCTGTGCTTCCTATGGATTTCTGGGAGCAGCAGTGTTTTATATGTAGGCATTCAAGTATTAACGTCAATTCTGTTCGTGTGAGGAAGACAGTAATTGTTTTCGCATTGCTGTTGTTTATACTGGTTACTTTCGTGATTTGCTTTGTGTGTGGGAAGAAGAGGAAGGGGAGTGGCAGAAGGATTGGACCAGGGCCGAGTTGTAGAGTTGAGACGAGTAGAGTACCAAGGAGTTTTTCACGTAAAGAGATCACATGGGCTACAATGGGGTTTAATAGAAGTAGAATTGTTGGGGAAGGAGCAACAGGTAAGGTGTACAAAGGTTGTTTGGTATCTGGTGAAGAAGTGGCAGTCAAAAGGCTTGAGAGATCTGATGGGCTTGAGCTTTTGCGTGGTTCTTTTATCACGGAGTTTATAACCATGGCAGGGTATTTGCGGCACAAGAATTTGGTTCAGCTTCATGGCTGGTGCTGTGAGGGTAATGAGCTAGTTCTGGTGTATGAGTTTGTACCAAATGGTAGCCTCAACAGATATATCCACAGAAGCTTCAATGTGGCTGCTGTCCTATCTTGGAAGCAAAGACTTAATATAGTTGATGGAGTTGCATCGGCTCTTATGTATCTTCATGAGGAGTGTGAGAGGCAGATAATTCACGGAGATGTTAGAACTTGCAACATAATGCTAGATGCAGAGTTAAATGCAAAGCTTGAGGGCTTTGATCTGGCAAAAGTTCATGATCGCAGTTCAATCACAAGAGAAGCGACCATACCAGCCGGAACAATGGGATATCTTGCTCCTGAATATGTTTACTCTGGTGTTGCAACTGTTAAAACTGATGTCTACAGCTTTGGTGTGGTGATCTTAGAGGTGGCTACAGGTAGAAAGCCAGTGGAGGATGATGGTACAGTGATTGTTGATTGGGTTTGGGGCCTGTGGGAAGTGGGGAAACTGATTGAATCTGCTGATCCATGGCTGGCTGGGAATTTTGACAAGGTAGAGATGGAAAGACTGCTGATGACTGGACTTGCTTGTGTGCACCCAAATCCTGCAAAGAGGCCAACAGTTAAAGAAGCTGCAAAGATATTACAAGGAAAAGCGTTACTTCCTGTATTGCCTGCAAGAAAACCTAGCGGGGTGAGCCTTCGTGATTGGTGCTCTGGTATGTTTCGCCTTTAA

Protein Analysis

577

Amino Acids

63.38

Weight (kDa)

8.82

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 80 - 180 2.2e-18 Legume lectin domain
Pkinase PF00069 277 - 544 1.7e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 279 - 544 8.9e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 971
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 1395
AciI CCGC 7 cut(s) 70, 89, 158, 204, 498, 991, 1686
AclWI GGATC 1 cut(s) 1514
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 1000, 1537
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 4 cut(s) 780, 872, 1065, 1459
AfiI CCNNNNNNNGG 3 cut(s) 195, 229, 981
AgsI TTSAA 6 cut(s) 55, 544, 612, 1105, 1302, 1511
AjnI CCWGG 1 cut(s) 745
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AluBI AGCT 7 cut(s) 940, 1012, 1042, 1101, 1261, 1401, 1628
AluI AGCT 7 cut(s) 940, 1012, 1042, 1101, 1261, 1401, 1628
Alw21I GWGCWC 2 cut(s) 1593, 1712
Alw26I GTCTC 3 cut(s) 275, 555, 761
Alw44I GTGCAC 1 cut(s) 1589
AlwI GGATC 1 cut(s) 1514
AoxI GGCC 6 cut(s) 155, 198, 207, 749, 1483, 1610
ApaLI GTGCAC 1 cut(s) 1589
ApeKI GCWGC 4 cut(s) 482, 586, 1112, 1628
ApoI RAATTY 2 cut(s) 1000, 1537
AspS9I GGNCC 5 cut(s) 198, 207, 743, 749, 1483
AsuHPI GGTGA 5 cut(s) 97, 384, 905, 1423, 1702
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 1593
BarI GAAGNNNNNNTAC 2 cut(s) 1305, 1337
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 2 cut(s) 1593, 1712
BbvI GCAGC 4 cut(s) 494, 598, 1099, 1615
BccI CCATC 6 cut(s) 100, 149, 923, 1145, 1448, 1549
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 275, 555, 761
BfaI CTAG 3 cut(s) 1043, 1238, 1683
BfmI CTRYAG 3 cut(s) 480, 1396, 1428
BfuAI ACCTGC 1 cut(s) 176
BglI GCCNNNNNGGC 1 cut(s) 206
BglII AGATCT 1 cut(s) 923
BisI GCNGC 7 cut(s) 158, 483, 499, 587, 992, 1113, 1629
BlsI GCNGC 7 cut(s) 159, 484, 500, 588, 993, 1114, 1630
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 5 cut(s) 198, 207, 743, 749, 1483
BmiI GGNNCC 3 cut(s) 208, 251, 1484
BmrFI CCNGG 1 cut(s) 747
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 1169, 1231
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 650
BpuEI CTTGAG 3 cut(s) 938, 956, 1283
BsaAI YACGTR 1 cut(s) 797
BsaBI GATNNNNATC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 555
BsaJI CCNNGG 5 cut(s) 189, 746, 782, 975, 1523
BsaWI WCCGGW 3 cut(s) 394, 415, 443
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 229, 981
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 4 cut(s) 224, 684, 1442, 1579
Bse3DI GCAATG 1 cut(s) 662
Bse8I GATNNNNATC 1 cut(s) 266
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 5 cut(s) 189, 746, 782, 975, 1523
BseGI GGATG 2 cut(s) 534, 1456
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 3 cut(s) 195, 229, 981
BseMI GCAATG 1 cut(s) 662
BseNI ACTGG 4 cut(s) 224, 684, 1442, 1579
BseRI GAGGAG 1 cut(s) 1199
BseSI GKGCMC 1 cut(s) 1593
BseX3I CGGCCG 1 cut(s) 155
BseXI GCAGC 4 cut(s) 494, 598, 1099, 1615
BseYI CCCAGC 2 cut(s) 302, 1532
BsgI GTGCAG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 6 cut(s) 157, 200, 209, 751, 1485, 1612
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 1593, 1712
BsiSI CCGG 5 cut(s) 201, 395, 416, 444, 1329
BslI CCNNNNNNNGG 3 cut(s) 195, 229, 981
BsmAI GTCTC 3 cut(s) 275, 555, 761
BsmBI CGTCTC 1 cut(s) 761
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 6 cut(s) 157, 200, 209, 751, 1485, 1612
Bso31I GGTCTC 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 1593, 1712
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
Bsp19I CCATGG 2 cut(s) 975, 1523
BspACI CCGC 7 cut(s) 70, 89, 158, 204, 498, 991, 1686
BspANI GGCC 6 cut(s) 157, 200, 209, 751, 1485, 1612
BspHI TCATGA 2 cut(s) 1180, 1288
BspLI GGNNCC 3 cut(s) 208, 251, 1484
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 1514
BspQI GCTCTTC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 555
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 4 cut(s) 224, 684, 1442, 1579
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 5 cut(s) 189, 746, 782, 975, 1523
BssMI GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 3 cut(s) 782, 975, 1523
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 5 cut(s) 286, 649, 1381, 1462, 1618
Bst6I CTCTTC 4 cut(s) 81, 116, 508, 710
BstACI GRCGYC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 870
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 3 cut(s) 202, 1530, 1671
BstDEI CTNAG 1 cut(s) 1417
BstDSI CCRYGG 2 cut(s) 975, 1523
BstF5I GGATG 2 cut(s) 534, 1456
BstKTI GATC 8 cut(s) 48, 361, 807, 926, 1276, 1294, 1416, 1522
BstMAI GTCTC 3 cut(s) 275, 555, 761
BstMBI GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 3 cut(s) 206, 562, 1692
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 745
BstSFI CTRYAG 3 cut(s) 480, 1396, 1428
BstSLI GKGCMC 1 cut(s) 1593
BstV1I GCAGC 4 cut(s) 494, 598, 1099, 1615
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 1 cut(s) 923
BstYI RGATCY 1 cut(s) 923
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 6 cut(s) 157, 200, 209, 751, 1485, 1612
BtgI CCRYGG 2 cut(s) 975, 1523
BtsCI GGATG 2 cut(s) 534, 1456
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 3 cut(s) 596, 1449, 1467
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 202, 1530, 1671
CciI TCATGA 2 cut(s) 1180, 1288
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 5 cut(s) 198, 207, 743, 749, 1483
CseI GACGC 1 cut(s) 128
Csp6I GTAC 4 cut(s) 779, 871, 1064, 1458
CviAII CATG 7 cut(s) 254, 810, 976, 1016, 1181, 1289, 1524
CviQI GTAC 4 cut(s) 779, 871, 1064, 1458
DdeI CTNAG 1 cut(s) 1417
DpnI GATC 8 cut(s) 47, 360, 806, 925, 1275, 1293, 1415, 1521
DpnII GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
Eam1104I CTCTTC 4 cut(s) 81, 116, 508, 710
EarI CTCTTC 4 cut(s) 81, 116, 508, 710
EclXI CGGCCG 1 cut(s) 155
Eco130I CCWWGG 3 cut(s) 782, 975, 1523
Eco31I GGTCTC 1 cut(s) 555
Eco32I GATATC 2 cut(s) 268, 1343
Eco47I GGWCC 1 cut(s) 743
Eco52I CGGCCG 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 383
EcoO109I RGGNCCY 2 cut(s) 207, 1483
EcoRII CCWGG 1 cut(s) 745
EcoRV GATATC 2 cut(s) 268, 1343
EcoT14I CCWWGG 3 cut(s) 782, 975, 1523
ErhI CCWWGG 3 cut(s) 782, 975, 1523
Esp3I CGTCTC 1 cut(s) 761
FaeI CATG 7 cut(s) 257, 813, 979, 1019, 1184, 1292, 1527
FalI AAGNNNNNCTT 2 cut(s) 1641, 1673
FatI CATG 7 cut(s) 253, 809, 975, 1015, 1180, 1288, 1523
FauI CCCGC 3 cut(s) 77, 197, 1679
FblI GTMKAC 1 cut(s) 1395
Fnu4HI GCNGC 7 cut(s) 158, 483, 499, 587, 992, 1113, 1629
FokI GGATG 2 cut(s) 541, 1463
Fsp4HI GCNGC 7 cut(s) 158, 483, 499, 587, 992, 1113, 1629
FspBI CTAG 3 cut(s) 1043, 1238, 1683
GluI GCNGC 7 cut(s) 158, 483, 499, 587, 992, 1113, 1629
GsaI CCCAGC 2 cut(s) 306, 1536
HaeIII GGCC 6 cut(s) 157, 200, 209, 751, 1485, 1612
HapII CCGG 5 cut(s) 201, 395, 416, 444, 1329
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 7 cut(s) 257, 813, 979, 1019, 1184, 1292, 1527
HindIII AAGCTT 2 cut(s) 1099, 1259
HinfI GANTC 3 cut(s) 370, 412, 1511
HpaII CCGG 5 cut(s) 201, 395, 416, 444, 1329
HphI GGTGA 5 cut(s) 97, 384, 905, 1423, 1702
Hpy166II GTNNAC 4 cut(s) 871, 1363, 1396, 1591
Hpy188I TCNGA 4 cut(s) 190, 363, 411, 928
Hpy188III TCNNGA 7 cut(s) 43, 259, 691, 1181, 1289, 1352, 1700
Hpy8I GTNNAC 4 cut(s) 871, 1363, 1396, 1591
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 8 cut(s) 37, 220, 319, 567, 715, 729, 845, 1706
HpyCH4III ACNGT 5 cut(s) 286, 649, 1381, 1462, 1618
HpyCH4IV ACGT 2 cut(s) 621, 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 562, 1692
HpyF3I CTNAG 1 cut(s) 1417
HpySE526I ACGT 2 cut(s) 621, 796
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 7 cut(s) 257, 813, 979, 1019, 1184, 1292, 1527
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
LguI GCTCTTC 1 cut(s) 508
LmnI GCTCC 4 cut(s) 249, 583, 854, 1354
Lsp1109I GCAGC 4 cut(s) 494, 598, 1099, 1615
LweI GCATC 2 cut(s) 1169, 1231
MaeI CTAG 3 cut(s) 1043, 1238, 1683
MaeII ACGT 2 cut(s) 621, 796
MaeIII GTNAC 2 cut(s) 682, 1653
MalI GATC 8 cut(s) 47, 360, 806, 925, 1275, 1293, 1415, 1521
MbiI CCGCTC 1 cut(s) 160
MboI GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 2 cut(s) 1593, 1712
MluCI AATT 8 cut(s) 449, 523, 625, 651, 840, 1000, 1203, 1537
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 1212
MspI CCGG 5 cut(s) 201, 395, 416, 444, 1329
MspR9I CCNGG 1 cut(s) 747
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 1 cut(s) 747
MwoI GCNNNNNNNGC 3 cut(s) 206, 562, 1692
NaeI GCCGGC 1 cut(s) 202
NcoI CCATGG 2 cut(s) 975, 1523
NdeII GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 7 cut(s) 257, 813, 979, 1019, 1184, 1292, 1527
NlaIV GGNNCC 3 cut(s) 208, 251, 1484
NmeAIII GCCGAG 2 cut(s) 133, 777
PagI TCATGA 2 cut(s) 1180, 1288
PaqCI CACCTGC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 508
PctI GAATGC 1 cut(s) 607
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 370, 1511
PkrI GCNGC 7 cut(s) 159, 484, 500, 588, 993, 1114, 1630
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Ppu21I YACGTR 1 cut(s) 797
PsiI TTATAA 1 cut(s) 971
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 2 cut(s) 302, 1532
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 208, 251, 1484
PspPI GGNCC 5 cut(s) 198, 207, 743, 749, 1483
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 923
RsaI GTAC 4 cut(s) 780, 872, 1065, 1459
RsaNI GTAC 4 cut(s) 779, 871, 1064, 1458
RseI CAYNNNNRTG 1 cut(s) 1212
SapI GCTCTTC 1 cut(s) 508
SatI GCNGC 7 cut(s) 158, 483, 499, 587, 992, 1113, 1629
Sau3AI GATC 8 cut(s) 45, 358, 804, 923, 1273, 1291, 1413, 1519
Sau96I GGNCC 5 cut(s) 198, 207, 743, 749, 1483
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 2 cut(s) 1593, 1712
SfaNI GCATC 2 cut(s) 1169, 1231
SfcI CTRYAG 3 cut(s) 480, 1396, 1428
SfiI GGCCNNNNNGGCC 1 cut(s) 206
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 1212
SmlI CTYRAG 3 cut(s) 917, 935, 1262
SmoI CTYRAG 3 cut(s) 917, 935, 1262
Sse9I AATT 8 cut(s) 449, 523, 625, 651, 840, 1000, 1203, 1537
SsiI CCGC 7 cut(s) 70, 89, 158, 204, 498, 991, 1686
SspMI CTAG 3 cut(s) 1043, 1238, 1683
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 3 cut(s) 782, 975, 1523
TaaI ACNGT 5 cut(s) 286, 649, 1381, 1462, 1618
TaiI ACGT 2 cut(s) 624, 799
TasI AATT 8 cut(s) 449, 523, 625, 651, 840, 1000, 1203, 1537
TatI WGTACW 1 cut(s) 870
TauI GCSGC 3 cut(s) 160, 501, 994
TfiI GAWTC 2 cut(s) 370, 1511
TscAI CASTG 3 cut(s) 596, 1449, 1467
TseI GCWGC 4 cut(s) 482, 586, 1112, 1628
TspDTI ATGAA 3 cut(s) 1004, 1169, 1277
TspGWI ACGGA 2 cut(s) 977, 1224
TspRI CASTG 3 cut(s) 596, 1449, 1467
VneI GTGCAC 1 cut(s) 1589
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 2 cut(s) 1000, 1537
XmiI GTMKAC 1 cut(s) 1395
XspI CTAG 3 cut(s) 1043, 1238, 1683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.