Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

1325693 .. 1327173

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGCATTCATCTCGTCCATTTCTCTTCTGGGTCCTTTTCTTTTTCGTCTCCAACCTCAGTTTCCCTTCGCTTTCTGTCCCGTTCTTGCCTGCGACGAACAATAACCTCACCCTCTTCGGCGACGCTTCCATCACCAACACCGCGATTAGTCTCACTCAAGAACTCACCACCTGCCCCTCCTCCTCCCCTTCTGCTTCTTCTGGGGTTGGAAGAGCATTTTACGCCTACCCAATTCGGTTTCTTGACTCGAAAACCAACGCCACTGCCTCTTTCTTGTGCCGATTCTCTTTCTCAATCACCCCAAGTTCCCGATTGTGTTCTTCTGGAGATGGCATTGCGTTTGTGATCACCCCCGATGTTGATTCTCTGGGATCATCCAGAGGGGGGTATATGGGACTTCCGGAGCCATCCTCAGCGTCGAAAGAATCGTTCTTCGCTGTGGAATTCGATACTAGGTTTGATCCTATGGTCGGTGACATCAATGGGAACCACATTGGTATTGATTTGAACACAGTTGTGTCTGTTGCCTGTGTTGATGTTGTTTCAAGAGGTATTGATTTGACAAGTGGGAGGGAGATTACTGCTTGGATTGAGTACAGAGATGCTGTCAAGATGATTCGGGTTTGGGTCGGATACTCGTCAACTAGGCCTCCAACGCCTCTTCTTGTTGCTCAGATTGACCTCTCCAACCAGTTCAAGGAGTTCATGCGTGTCGGTTTCTCAGCCTCGAATGGGCATGGCTCTTCAGTTCACGTTGTTTACAGGTGGAGATTCAAGACTTTCGGGTCTCTTCCACCTGGGAATCCTACAGATGCCTTTGAAGAAGGGGACTGCTTCATGTGCTCTTCACCAGAAGATTCAAGTACCAAAAGCATCCCGGAAAATCGTTCCCATGAAAGAAAAACAAAGATAGTGGAGATGGTTCTTGGGTTGGGAGGTTTAGCAGCGGTCACTGCCAGAAGGAGCAGAGAGGGCAAAACTTGTAGAGTTGAGGCGAATAAAGTTCCGACGAGTTTGTCTCTTGCAGAGATAAGATCAGCGACAATGGGGTTTAACCGACACAGGGTTGTCGGGGAAGGGGCATCAGCTAAGGTTTATAAAGGGTCTCTGTCCTCTGGTGGAGAAGTGGCTGTGAAAAGGTTTGAGAGGGGTGATGGGATCGGTAGTCTGCGTAATCCTTTTACCACGGAGTTTGCAACTATGGTGGGTTGTTTGCGGCACAAGAATCTGATCCAGCTTCATGGGTGGTGCTGTGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

421

Amino Acids

45.6

Weight (kDa)

8.5

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1098
AarI	CACCTGC	1 cut(s)	179
AasI	GACNNNNNNGTC	2 cut(s)	784, 1015
Acc36I	ACCTGC	1 cut(s)	179
AccII	CGCG	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	3 cut(s)	141, 947, 1216
AclWI	GGATC	4 cut(s)	379, 455, 1166, 1225
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	2 cut(s)	596, 865
AfiI	CCNNNNNNNGG	5 cut(s)	384, 470, 697, 732, 1063
AgsI	TTSAA	6 cut(s)	508, 546, 697, 775, 821, 861
AjnI	CCWGG	1 cut(s)	796
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	2 cut(s)	1088, 1237
AluI	AGCT	2 cut(s)	1088, 1237
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	5 cut(s)	52, 155, 792, 1023, 1110
AlwI	GGATC	4 cut(s)	379, 455, 1166, 1225
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	1 cut(s)	944
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	878
AsuHPI	GGTGA	8 cut(s)	100, 124, 157, 289, 340, 485, 840, 1163
AvaII	GGWCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	845
BbvCI	CCTCAGC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	956
BccI	CCATC	5 cut(s)	137, 323, 415, 913, 1148
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	798
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	878
BcoDI	GTCTC	5 cut(s)	52, 155, 792, 1023, 1110
BfaI	CTAG	2 cut(s)	453, 645
BfmI	CTRYAG	1 cut(s)	807
BfuAI	ACCTGC	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	626
BisI	GCNGC	2 cut(s)	945, 1217
BlsI	GCNGC	2 cut(s)	946, 1218
Bme1390I	CCNGG	2 cut(s)	798, 878
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	3 cut(s)	32, 405, 488
BmrFI	CCNGG	2 cut(s)	798, 878
BmsI	GCATC	4 cut(s)	592, 802, 882, 1091
BplI	GAGNNNNNCTC	4 cut(s)	395, 427, 1003, 1035
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	2 cut(s)	412, 1089
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	878
BsaI	GGTCTC	2 cut(s)	792, 1110
BsaJI	CCNNGG	2 cut(s)	797, 1185
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	5 cut(s)	384, 470, 697, 732, 1063
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	797, 1185
BseGI	GGATG	3 cut(s)	374, 407, 873
BseLI	CCNNNNNNNGG	5 cut(s)	384, 470, 697, 732, 1063
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	70, 426, 686, 735
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	2 cut(s)	169, 172
BseXI	GCAGC	1 cut(s)	956
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	845
BsiSI	CCGG	2 cut(s)	401, 878
BslFI	GGGAC	3 cut(s)	62, 408, 842
BslI	CCNNNNNNNGG	5 cut(s)	384, 470, 697, 732, 1063
BsmAI	GTCTC	5 cut(s)	52, 155, 792, 1023, 1110
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	3 cut(s)	62, 408, 842
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	649
Bso31I	GGTCTC	2 cut(s)	792, 1110
Bsp1286I	GDGCHC	1 cut(s)	845
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
BspACI	CCGC	3 cut(s)	141, 947, 1216
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	4 cut(s)	69, 425, 685, 734
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	32, 405, 488
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	4 cut(s)	379, 455, 1166, 1225
BspQI	GCTCTTC	3 cut(s)	205, 748, 850
BspTNI	GGTCTC	2 cut(s)	792, 1110
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	797, 1185
BssMI	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	7 cut(s)	29, 119, 205, 666, 748, 795, 850
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	5 cut(s)	56, 412, 672, 721, 1089
BstDSI	CCRYGG	1 cut(s)	1185
BstF5I	GGATG	3 cut(s)	374, 407, 873
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	6 cut(s)	348, 374, 463, 1037, 1161, 1233
BstMAI	GTCTC	5 cut(s)	52, 155, 792, 1023, 1110
BstMBI	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 655, 840, 953, 972
BstNI	CCWGG	1 cut(s)	798
BstSCI	CCNGG	2 cut(s)	796, 876
BstSFI	CTRYAG	1 cut(s)	807
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	956
BstXI	CCANNNNNNTGG	1 cut(s)	1241
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	1185
BtsCI	GGATG	3 cut(s)	374, 407, 873
BtsI	GCAGTG	2 cut(s)	261, 951
BtsIMutI	CAGTG	2 cut(s)	261, 951
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	2 cut(s)	131, 405
Csp6I	GTAC	2 cut(s)	595, 864
CspCI	CAANNNNNGTGG	6 cut(s)	894, 929, 1174, 1185, 1209, 1220
CviAII	CATG	5 cut(s)	706, 737, 838, 893, 1241
CviJI	RGCY	7 cut(s)	406, 649, 725, 741, 1088, 1130, 1237
CviKI_1	RGCY	7 cut(s)	406, 649, 725, 741, 1088, 1130, 1237
CviQI	GTAC	2 cut(s)	595, 864
DdeI	CTNAG	5 cut(s)	56, 412, 672, 721, 1089
DpnI	GATC	6 cut(s)	347, 373, 462, 1036, 1160, 1232
DpnII	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
DrdI	GACNNNNNNGTC	2 cut(s)	784, 1015
DseDI	GACNNNNNNGTC	2 cut(s)	784, 1015
Eam1104I	CTCTTC	7 cut(s)	29, 119, 205, 666, 748, 795, 850
EarI	CTCTTC	7 cut(s)	29, 119, 205, 666, 748, 795, 850
Eco147I	AGGCCT	1 cut(s)	649
Eco31I	GGTCTC	2 cut(s)	792, 1110
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	796
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	5 cut(s)	709, 740, 841, 896, 1244
FaqI	GGGAC	3 cut(s)	62, 408, 842
FatI	CATG	5 cut(s)	705, 736, 837, 892, 1240
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	945, 1217
FokI	GGATG	3 cut(s)	361, 394, 860
Fsp4HI	GCNGC	2 cut(s)	945, 1217
FspBI	CTAG	2 cut(s)	453, 645
GluI	GCNGC	2 cut(s)	945, 1217
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	2 cut(s)	401, 878
HgaI	GACGC	2 cut(s)	131, 405
Hin1II	CATG	5 cut(s)	709, 740, 841, 896, 1244
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	9 cut(s)	245, 282, 362, 425, 616, 771, 802, 857, 1225
HpaII	CCGG	2 cut(s)	401, 878
HphI	GGTGA	8 cut(s)	100, 124, 157, 289, 340, 485, 840, 1163
Hpy166II	GTNNAC	3 cut(s)	642, 751, 760
Hpy188I	TCNGA	4 cut(s)	632, 675, 1008, 1230
Hpy188III	TCNNGA	9 cut(s)	158, 242, 309, 324, 378, 401, 546, 610, 775
Hpy8I	GTNNAC	3 cut(s)	642, 751, 760
Hpy99I	CGWCG	4 cut(s)	97, 125, 421, 1012
HpyAV	CCTTC	5 cut(s)	75, 198, 818, 954, 1070
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	3 cut(s)	4, 1025, 1196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 655, 840, 953, 972
HpyF3I	CTNAG	5 cut(s)	56, 412, 672, 721, 1089
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	5 cut(s)	709, 740, 841, 896, 1244
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
LguI	GCTCTTC	3 cut(s)	205, 748, 850
LmnI	GCTCC	2 cut(s)	403, 963
Lsp1109I	GCAGC	1 cut(s)	956
LweI	GCATC	4 cut(s)	592, 802, 882, 1091
MaeI	CTAG	2 cut(s)	453, 645
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	2 cut(s)	473, 949
MalI	GATC	6 cut(s)	347, 373, 462, 1036, 1160, 1232
MboI	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
MhlI	GDGCHC	1 cut(s)	845
MluCI	AATT	2 cut(s)	231, 443
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	6 cut(s)	75, 187, 610, 677, 711, 1031
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	1 cut(s)	1053
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	2 cut(s)	401, 878
MspR9I	CCNGG	2 cut(s)	798, 878
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	5 cut(s)	221, 655, 840, 953, 972
NciI	CCSGG	1 cut(s)	878
NdeII	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
NlaIII	CATG	5 cut(s)	709, 740, 841, 896, 1244
NlaIV	GGNNCC	3 cut(s)	32, 405, 488
NmuCI	GTSAC	2 cut(s)	473, 949
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	515
PaqCI	CACCTGC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	649
PciSI	GCTCTTC	3 cut(s)	205, 748, 850
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	8 cut(s)	282, 362, 425, 616, 771, 802, 857, 1225
PfoI	TCCNGGA	1 cut(s)	876
PkrI	GCNGC	2 cut(s)	946, 1218
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	1098
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	3 cut(s)	32, 405, 488
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	596, 865
RsaNI	GTAC	2 cut(s)	595, 864
RseI	CAYNNNNRTG	1 cut(s)	515
SapI	GCTCTTC	3 cut(s)	205, 748, 850
SaqAI	TTAA	1 cut(s)	1053
SatI	GCNGC	2 cut(s)	945, 1217
Sau3AI	GATC	6 cut(s)	345, 371, 460, 1034, 1158, 1230
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	798, 878
SduI	GDGCHC	1 cut(s)	845
SfaNI	GCATC	4 cut(s)	592, 802, 882, 1091
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	2 cut(s)	231, 443
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	3 cut(s)	141, 947, 1216
SspMI	CTAG	2 cut(s)	453, 645
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	2 cut(s)	796, 876
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	4 cut(s)	248, 419, 447, 728
TasI	AATT	2 cut(s)	231, 443
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	1219
TfiI	GAWTC	8 cut(s)	282, 362, 425, 616, 771, 802, 857, 1225
Tru1I	TTAA	1 cut(s)	1053
Tru9I	TTAA	1 cut(s)	1053
TscAI	CASTG	2 cut(s)	268, 958
TseFI	GTSAC	2 cut(s)	473, 949
TseI	GCWGC	1 cut(s)	944
Tsp45I	GTSAC	2 cut(s)	473, 949
TspDTI	ATGAA	4 cut(s)	694, 826, 909, 1229
TspGWI	ACGGA	1 cut(s)	1202
TspRI	CASTG	2 cut(s)	268, 958
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XspI	CTAG	2 cut(s)	453, 645
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.