Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

2466900 .. 2467472

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1019400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGCAGGGCTCTTAAAGTTCTGACAAGTTTGTCTCTTGCGGATATAAGATCAGCTACAATGGGGTTTAACCGAAACAGGGTATTGGGGAAGGAGCATCAGCTAAGATTTATAAAGGATCTCTGCACTCTTGTTGGAGAAGTGGCAATAAAAAGGTTTGAGAGGGCTGATGGGATTGGTAGTCTGCATCATCCTTTTACCACGGAGTTTGCAACTATGGTGGGTTGTTTGCGGCAGAAGAATCTGATTCAGCTTCATGGGTGGTGCTGTGAGCGTAATGAGTTAGTCCTGGTGTACGAGTACATTGCCCAACGGAAGCCTCAACAAATGCCTTTGAGGAAGGGGACTGCTTCATGTGCTTGTCACCAGAAGATTCAAGTACCAAAAGCAGCCCTGAAAATCGCTCCCATGAAAGAAAAACAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

16.13

Weight (kDa)

9.94

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AasI	GACNNNNNNGTC	1 cut(s)	31
AciI	CCGC	2 cut(s)	41, 232
AclWI	GGATC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	296, 302, 381
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	56, 103, 253
AluI	AGCT	3 cut(s)	56, 103, 253
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	233, 390
BlsI	GCNGC	2 cut(s)	234, 391
Bme1390I	CCNGG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	106, 196
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	50, 118
BspACI	CCGC	2 cut(s)	41, 232
BspPI	GGATC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	50, 118
Bst2UI	CCWGG	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	53, 121
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	50, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	295, 301, 380
CspCI	CAANNNNNGTGG	4 cut(s)	190, 201, 225, 236
CviAII	CATG	3 cut(s)	257, 354, 409
CviJI	RGCY	7 cut(s)	11, 56, 103, 167, 253, 319, 392
CviKI_1	RGCY	7 cut(s)	11, 56, 103, 167, 253, 319, 392
CviQI	GTAC	3 cut(s)	295, 301, 380
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	52, 120
DpnII	GATC	2 cut(s)	50, 118
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	3 cut(s)	260, 357, 412
FaiI	YATR	6 cut(s)	47, 113, 218, 258, 355, 410
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	3 cut(s)	256, 353, 408
Fnu4HI	GCNGC	2 cut(s)	233, 390
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	233, 390
GluI	GCNGC	2 cut(s)	233, 390
Hin1II	CATG	3 cut(s)	260, 357, 412
HinfI	GANTC	3 cut(s)	241, 247, 373
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	24, 246
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	85, 334
HpyCH4V	TGCA	3 cut(s)	126, 187, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	260, 357, 412
Kzo9I	GATC	2 cut(s)	50, 118
LmnI	GCTCC	2 cut(s)	94, 409
LpnPI	CCDG	5 cut(s)	64, 275, 302, 380, 407
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	106, 196
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	52, 120
MboI	GATC	2 cut(s)	50, 118
MboII	GAAGA	2 cut(s)	250, 382
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	3 cut(s)	156, 330, 330
MseI	TTAA	2 cut(s)	15, 69
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	50, 118
NlaIII	CATG	3 cut(s)	260, 357, 412
NmuCI	GTSAC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	241, 247, 373
PkrI	GCNGC	2 cut(s)	234, 391
PsiI	TTATAA	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	3 cut(s)	296, 302, 381
RsaNI	GTAC	3 cut(s)	295, 301, 380
SaqAI	TTAA	2 cut(s)	15, 69
SatI	GCNGC	2 cut(s)	233, 390
Sau3AI	GATC	2 cut(s)	50, 118
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	4 cut(s)	58, 105, 158, 255
SfaNI	GCATC	2 cut(s)	106, 196
SsiI	CCGC	2 cut(s)	41, 232
StyD4I	CCNGG	1 cut(s)	288
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	3 cut(s)	241, 247, 373
Tru1I	TTAA	2 cut(s)	15, 69
Tru9I	TTAA	2 cut(s)	15, 69
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	245, 342, 425
TspGWI	ACGGA	2 cut(s)	218, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.