Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

2484550 .. 2485725

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1019900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTGTCGGTTTCTCTGCCTCGAATGGGCAGGGCTCTTCAATTCATATTGTTGATAGGTGGAGATTCAAGACTTTCAGGTCTCTTCCACCTGGGATTCTTACAGATACCTTTGAGGAAGGGGACTGCTTCATGTGCTCGTCACCAGAAGATTCAAGTACCAAAAGCAGCCCTGAAAATCGCTGCCATGAAAGGAAAACAAAGACAGTGGAGATGGCTCTTGGGTTGGGAGGTTTAGCTACATATGTTGTCTCCATACTCACGTTTGTTTTTGTCATTTGTTTTGTGTGTGTGAAGAAGAGAAGGGTCGCATCAGCTAAGGTTTGTAAAGGGTCTTTGCCCTCTGAGGGAGAAGTGGCAGTGAAAAGGTTTGAGAGGGCTGATGGGATCGGTAGTCTGCGTAATCCTTTCACCACGGAGTTTGCAACTATGGTGGGTTGTTTGCGGCAGAAGAATTTGATTCAGCTTCATGGGTGGTGTTGTGAGGGTAATGCGTTAGTCCTGGTGTACGAATACATTGCCCAACGGAAGTCTCAACAAAGTTCTCCACAAAAGCTTCAATTCAGCAGTTCAACTATACCAGCTGGAACAATGGGATATCTTGCTCCAGAAGACGTTTATTCAGGTGTTCCAACAGTTAAAACTGATGTTTACAACTTTGGTGTGGTGGTGTTAGAGGTGGCAACGGGAAGAAAGCCGGTGGAGGATGATGGAACAGTGGTTGCTGATTGGGTTTGGAGCATGTGGGAAAATGGAAAACTGATTGAAGTTGCTGATCTGAGGTATATGGGGAAGTTTGATATGGAAGAAATGGAGAGGATGCTAATGACTGTACTTGCTTTTGTGCACCCAAACCATGTGAAGAGGGCAACGGTGAAGGAAGCTGCAAGGATTCTTAAAGGCAAAACCCCTCTTCCTCTGCTGCCACCAAGAAAACCAAGGGTAAGCCTTCGCCCCGTTTTTCCTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

325

Amino Acids

35.94

Weight (kDa)

8.78

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	79
AciI	CCGC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	454
AfaI	GTAC	3 cut(s)	160, 509, 834
AfiI	CCNNNNNNNGG	2 cut(s)	27, 347
AgsI	TTSAA	6 cut(s)	42, 70, 156, 560, 573, 767
AjnI	CCWGG	2 cut(s)	91, 501
AluBI	AGCT	6 cut(s)	239, 317, 466, 556, 584, 884
AluI	AGCT	6 cut(s)	239, 317, 466, 556, 584, 884
Alw21I	GWGCWC	2 cut(s)	140, 849
Alw26I	GTCTC	3 cut(s)	87, 256, 537
Alw44I	GTGCAC	1 cut(s)	845
AlwI	GGATC	1 cut(s)	395
ApaLI	GTGCAC	1 cut(s)	845
ApeKI	GCWGC	4 cut(s)	168, 183, 884, 922
ApoI	RAATTY	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	135, 403, 886
BaeGI	GKGCMC	1 cut(s)	849
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	140, 849
BbvI	GCAGC	4 cut(s)	170, 180, 871, 909
BccI	CCATC	3 cut(s)	208, 377, 704
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	2 cut(s)	93, 503
BcoDI	GTCTC	3 cut(s)	87, 256, 537
BisI	GCNGC	5 cut(s)	169, 184, 446, 885, 923
BlsI	GCNGC	5 cut(s)	170, 185, 447, 886, 924
Bme1390I	CCNGG	2 cut(s)	93, 503
BmrFI	CCNGG	2 cut(s)	93, 503
BmsI	GCATC	2 cut(s)	320, 810
BpiI	GAAGAC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	92, 414, 938
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 347
Bse118I	RCCGGY	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	93, 503
BseDI	CCNNGG	3 cut(s)	92, 414, 938
BseGI	GGATG	2 cut(s)	712, 825
BseLI	CCNNNNNNNGG	2 cut(s)	27, 347
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	336, 770
BseSI	GKGCMC	1 cut(s)	849
BseXI	GCAGC	4 cut(s)	170, 180, 871, 909
BsiHKAI	GWGCWC	2 cut(s)	140, 849
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	27, 347
BsmAI	GTCTC	3 cut(s)	87, 256, 537
BsmFI	GGGAC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	3 cut(s)	38, 140, 849
Bsp143I	GATC	2 cut(s)	387, 775
BspACI	CCGC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	337, 771
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	92, 414, 938
BssMI	GATC	2 cut(s)	387, 775
BssT1I	CCWWGG	1 cut(s)	938
Bst2UI	CCWGG	2 cut(s)	93, 503
Bst4CI	ACNGT	5 cut(s)	208, 637, 718, 832, 874
Bst6I	CTCTTC	5 cut(s)	43, 90, 293, 857, 918
BstDEI	CTNAG	3 cut(s)	318, 345, 779
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	712, 825
BstKTI	GATC	2 cut(s)	390, 778
BstMAI	GTCTC	3 cut(s)	87, 256, 537
BstMBI	GATC	2 cut(s)	387, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	2 cut(s)	93, 503
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	91, 501
BstSLI	GKGCMC	1 cut(s)	849
BstV1I	GCAGC	4 cut(s)	170, 180, 871, 909
BstV2I	GAAGAC	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	712, 825
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	213, 366, 723
Cfr10I	RCCGGY	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	159, 508, 833
CspCI	CAANNNNNGTGG	6 cut(s)	189, 224, 403, 414, 438, 449
CviAII	CATG	5 cut(s)	133, 188, 470, 742, 857
CviQI	GTAC	3 cut(s)	159, 508, 833
DdeI	CTNAG	3 cut(s)	318, 345, 779
DpnI	GATC	2 cut(s)	389, 777
DpnII	GATC	2 cut(s)	387, 775
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eam1104I	CTCTTC	5 cut(s)	43, 90, 293, 857, 918
EarI	CTCTTC	5 cut(s)	43, 90, 293, 857, 918
Eco130I	CCWWGG	1 cut(s)	938
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	91, 501
EcoRV	GATATC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	938
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	938
FaeI	CATG	5 cut(s)	136, 191, 473, 745, 860
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	132, 187, 469, 741, 856
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	5 cut(s)	169, 184, 446, 885, 923
FokI	GGATG	2 cut(s)	719, 832
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	169, 184, 446, 885, 923
GluI	GCNGC	5 cut(s)	169, 184, 446, 885, 923
GsuI	CTGGAG	1 cut(s)	591
HapII	CCGG	1 cut(s)	698
Hin1II	CATG	5 cut(s)	136, 191, 473, 745, 860
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	5 cut(s)	66, 97, 152, 460, 892
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	3 cut(s)	135, 403, 886
Hpy166II	GTNNAC	3 cut(s)	508, 652, 847
Hpy188I	TCNGA	2 cut(s)	346, 780
Hpy188III	TCNNGA	3 cut(s)	70, 608, 965
Hpy8I	GTNNAC	3 cut(s)	508, 652, 847
HpyAV	CCTTC	4 cut(s)	113, 297, 871, 959
HpyCH4III	ACNGT	5 cut(s)	208, 637, 718, 832, 874
HpyCH4IV	ACGT	2 cut(s)	263, 615
HpyCH4V	TGCA	3 cut(s)	425, 847, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	3 cut(s)	318, 345, 779
HpySE526I	ACGT	2 cut(s)	263, 615
Hsp92II	CATG	5 cut(s)	136, 191, 473, 745, 860
Kzo9I	GATC	2 cut(s)	387, 775
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	610, 738
Lsp1109I	GCAGC	4 cut(s)	170, 180, 871, 909
LweI	GCATC	2 cut(s)	320, 810
MaeII	ACGT	2 cut(s)	263, 615
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	2 cut(s)	389, 777
MboI	GATC	2 cut(s)	387, 775
MhlI	GDGCHC	3 cut(s)	38, 140, 849
MluCI	AATT	3 cut(s)	42, 454, 560
MmeI	TCCRAC	1 cut(s)	656
MseI	TTAA	2 cut(s)	639, 897
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	93, 503
MvaI	CCWGG	2 cut(s)	93, 503
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	2 cut(s)	387, 775
NlaIII	CATG	5 cut(s)	136, 191, 473, 745, 860
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	43
PfeI	GAWTC	5 cut(s)	66, 97, 152, 460, 892
PkrI	GCNGC	5 cut(s)	170, 185, 447, 886, 924
Psp6I	CCWGG	2 cut(s)	91, 501
PspGI	CCWGG	2 cut(s)	91, 501
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	160, 509, 834
RsaNI	GTAC	3 cut(s)	159, 508, 833
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	639, 897
SatI	GCNGC	5 cut(s)	169, 184, 446, 885, 923
Sau3AI	GATC	2 cut(s)	387, 775
ScrFI	CCNGG	2 cut(s)	93, 503
SduI	GDGCHC	3 cut(s)	38, 140, 849
SfaNI	GCATC	2 cut(s)	320, 810
Sse9I	AATT	3 cut(s)	42, 454, 560
SsiI	CCGC	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	91, 501
StyI	CCWWGG	1 cut(s)	938
TaaI	ACNGT	5 cut(s)	208, 637, 718, 832, 874
TaiI	ACGT	2 cut(s)	266, 618
TaqI	TCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	42, 454, 560
TatI	WGTACW	1 cut(s)	832
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	5 cut(s)	66, 97, 152, 460, 892
Tru1I	TTAA	2 cut(s)	639, 897
Tru9I	TTAA	2 cut(s)	639, 897
TscAI	CASTG	3 cut(s)	213, 366, 723
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	4 cut(s)	168, 183, 884, 922
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	35, 121, 204, 458
TspGWI	ACGGA	2 cut(s)	431, 541
TspRI	CASTG	3 cut(s)	213, 366, 723
VneI	GTGCAC	1 cut(s)	845
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.