Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

54802956 .. 54803732

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG410200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGTTTGTGATCACCTCTGATATGGAGGGTTTCAGCTCCTCAAAAGGGTTCATGGGTCTCCCCCAAGATTCGTTCTTTGCTGTGGAATTTGATACCAGTTTTGACCCTGTGGTTGATGACATTAATGGGAGCCATGTTGGTATTGATCTCAACACTGTTGTGTCTGTGGCTTCTGTTAATGCAGGGATTGATTTGGTGGGTGGGAAGGAGATCACTGCTTGGGTTGAGTATAGAGATGATCTGAAGTTGGTTCGGGTTTGGGTCGGGTACTCGTCGGAGAATAAGCCTCCGAGTCCGGTTATTGTGGCCCAGATTGACCTCTCGAAGCAGTTCAAGGAGTTGGTGTATGTGGGGTTCTGTGCCGCAAATAGGAAGGGGTCTTCGGCCTACATTGTTGATAGTTGGAGGTTCAAGACTTTTAATGGGTCTCTGCCTTCTGTGATTCCTATGGATTTTTGGGAGGAGCAGGACTGTTTCATGTGTGGAGATTCGAGTATCGACATCACTTCTGTTCATGTAAGGAAAACAAGGATAGCGGTGGAGATTGCTTTCGGGTTGGTAGGTTTAGCTGAATTTGTGTTATTAGTAGGTGCAGTTTTGGTGATTTGTTGTGTGTGTGCAAGGAAGAGGAAGGGGAGTGGCAGAAGAAGTAGACAAGGGCTGAGTTGTAGAGTTGAGACGAGTGGAGTTCCAACGAGTTTGTCACTGGCGGAGATAACATCAGCTACAATGGGGTTTGATAGAAGAGTGGCAGAAGAAGTAGACAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

28.05

Weight (kDa)

5.08

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	1 - 140	1.7e-30	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	655, 765
AciI	CCGC	3 cut(s)	366, 539, 713
AcsI	RAATTY	2 cut(s)	89, 575
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	48, 372
AgsI	TTSAA	2 cut(s)	337, 415
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	3 cut(s)	39, 572, 728
AluI	AGCT	3 cut(s)	39, 572, 728
Alw26I	GTCTC	3 cut(s)	65, 435, 674
AoxI	GGCC	2 cut(s)	309, 387
ApoI	RAATTY	2 cut(s)	89, 575
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	7, 616
BbsI	GAAGAC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	3 cut(s)	65, 435, 674
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	65, 435
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 372
Bse1I	ACTGG	2 cut(s)	99, 714
BseLI	CCNNNNNNNGG	2 cut(s)	48, 372
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	2 cut(s)	99, 714
BseRI	GAGGAG	2 cut(s)	31, 479
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	311, 389
BsiSI	CCGG	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	48, 372
BsmAI	GTCTC	3 cut(s)	65, 435, 674
BsmBI	CGTCTC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	311, 389
Bso31I	GGTCTC	2 cut(s)	65, 435
Bsp143I	GATC	4 cut(s)	12, 148, 213, 241
BspACI	CCGC	3 cut(s)	366, 539, 713
BspANI	GGCC	2 cut(s)	311, 389
BspCNI	CTCAG	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	134
BspTNI	GGTCTC	2 cut(s)	65, 435
BsrI	ACTGG	2 cut(s)	99, 714
BssMI	GATC	4 cut(s)	12, 148, 213, 241
Bst4CI	ACNGT	2 cut(s)	160, 476
Bst6I	CTCTTC	2 cut(s)	623, 742
BstDEI	CTNAG	1 cut(s)	665
BstKTI	GATC	4 cut(s)	15, 151, 216, 244
BstMAI	GTCTC	3 cut(s)	65, 435, 674
BstMBI	GATC	4 cut(s)	12, 148, 213, 241
BstV2I	GAAGAC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	311, 389
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	156, 216, 707
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	4 cut(s)	55, 137, 481, 518
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	4 cut(s)	14, 150, 215, 243
DpnII	GATC	4 cut(s)	12, 148, 213, 241
Eam1104I	CTCTTC	2 cut(s)	623, 742
EarI	CTCTTC	2 cut(s)	623, 742
EciI	GGCGGA	1 cut(s)	728
Eco31I	GGTCTC	2 cut(s)	65, 435
Eco57I	CTGAAG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	4 cut(s)	58, 140, 484, 521
FaiI	YATR	8 cut(s)	26, 56, 138, 234, 351, 452, 482, 519
FatI	CATG	4 cut(s)	54, 136, 480, 517
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	2 cut(s)	655, 765
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	311, 389
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	4 cut(s)	58, 140, 484, 521
HinfI	GANTC	4 cut(s)	71, 295, 445, 491
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	2 cut(s)	7, 616
Hpy166II	GTNNAC	2 cut(s)	656, 766
Hpy188I	TCNGA	4 cut(s)	22, 246, 280, 294
Hpy188III	TCNNGA	2 cut(s)	325, 415
Hpy8I	GTNNAC	2 cut(s)	656, 766
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	4 cut(s)	202, 370, 447, 628
HpyCH4III	ACNGT	2 cut(s)	160, 476
HpyCH4V	TGCA	3 cut(s)	185, 596, 623
HpyF3I	CTNAG	1 cut(s)	665
Hsp92II	CATG	4 cut(s)	58, 140, 484, 521
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	12, 148, 213, 241
LmnI	GCTCC	3 cut(s)	44, 132, 466
LpnPI	CCDG	7 cut(s)	112, 123, 171, 312, 326, 455, 695
MaeIII	GTNAC	1 cut(s)	705
MalI	GATC	4 cut(s)	14, 150, 215, 243
MboI	GATC	4 cut(s)	12, 148, 213, 241
MboII	GAAGA	5 cut(s)	375, 640, 660, 759, 770
MluCI	AATT	2 cut(s)	89, 575
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	3 cut(s)	258, 386, 719
MnlI	CCTC	8 cut(s)	22, 28, 52, 300, 332, 402, 457, 624
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	3 cut(s)	126, 180, 423
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	1 cut(s)	299
NdeII	GATC	4 cut(s)	12, 148, 213, 241
NlaIII	CATG	4 cut(s)	58, 140, 484, 521
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	705
OliI	CACNNNNGTG	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	71, 445, 491
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	341, 373
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	126, 180, 423
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	12, 148, 213, 241
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	304
SetI	ASST	8 cut(s)	20, 41, 324, 413, 568, 574, 595, 730
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	89, 575
SsiI	CCGC	3 cut(s)	366, 539, 713
TaaI	ACNGT	2 cut(s)	160, 476
TaqI	TCGA	3 cut(s)	326, 494, 501
TasI	AATT	2 cut(s)	89, 575
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	71, 445, 491
Tru1I	TTAA	3 cut(s)	126, 180, 423
Tru9I	TTAA	3 cut(s)	126, 180, 423
TscAI	CASTG	3 cut(s)	163, 223, 714
TseFI	GTSAC	1 cut(s)	705
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	3 cut(s)	43, 469, 506
TspRI	CASTG	3 cut(s)	163, 223, 714
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	89, 575
XmiI	GTMKAC	2 cut(s)	655, 765
XmnI	GAANNNNTTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.