Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

37494065 .. 37494373

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGACAATGCATCCATACCTATTTCCATTCTGGACCCTTTTCTTTATCTTCTTCAACCTCACTTTCCCTTACTCAGTTTCTCGCCCACAACCACCTCCAACTCCATCAAACAACATCACCCTCTTCGGCGATGCCTTTATAATCCATAACGCCATTAGTCTCACTAATCCACTCTCCACTTGCCCTCGTACCAATTTCGATGAGGTTAGGGTCGGCGCAGCCTTTTATTCCAACCCAGTTCAATTTCTTGACCCCGAAACCAAAAATTGTGCCTCGTTCTTGAACCGCTTCACTTTCTCAATCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

6.69

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	35 - 101	1.1e-09	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AciI	CCGC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	55, 242, 283
Alw26I	GTCTC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	109, 295
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	19, 121
BmuI	ACTGGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	189
CviJI	RGCY	1 cut(s)	221
CviKI_1	RGCY	1 cut(s)	221
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	12
FaiI	YATR	3 cut(s)	16, 140, 147
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HphI	GGTGA	2 cut(s)	109, 295
Hpy188III	TCNNGA	3 cut(s)	31, 248, 280
HpyCH4V	TGCA	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	216
LpnPI	CCDG	2 cut(s)	16, 249
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	19, 121
MboII	GAAGA	3 cut(s)	40, 43, 115
MluCI	AATT	3 cut(s)	193, 242, 265
MmeI	TCCRAC	2 cut(s)	122, 255
MnlI	CCTC	6 cut(s)	68, 105, 131, 195, 196, 283
Mph1103I	ATGCAT	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SatI	GCNGC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	33
SetI	ASST	5 cut(s)	21, 60, 97, 207, 308
SfaNI	GCATC	2 cut(s)	19, 121
SgeI	CNNG	9 cut(s)	43, 93, 192, 198, 248, 260, 266, 286, 292
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	3 cut(s)	193, 242, 265
SsiI	CCGC	1 cut(s)	286
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	193, 242, 265
TseI	GCWGC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.