Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Reverse (-)

55277274 .. 55278259

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG412500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACAATGCATTCATACTCATTTCTCTTCTGTACCCTTTTCTTTGTCTTCTTCAACCTCACTTTCCCTCCTTCACTCTCTCACCCACTTCCCCCTCCAACTCCATCAAACAACATCACCCTCTTCGGCGACGCCTCCATTACCCACAACGCCATTAGTCTCGCTCAGCCGCTCTCCACCTGCCCCAGTACCAACACCTCCGAGGTTCGGCTCGGAGAAGCCTTCTATTCCAACCCAGTTCGTTTTCTTGACCCCAAAACCAAAGACTTCGCCTCTTTCTTGAGCCGCTTCACCTTCTCGATCACCCAATTGTGCTCTTCCGGAGACGGCATGGCGTTTGTGATCACCTCTAATATGGAGGGTTTCAGCTCCTCAAAAGGGTTCATGGGTCTCCCCCAAGATTCGTTCTTTGCTGTGGAATTCGATACCAGTTTTGACCCTGTGGTTGATGACATTAATGGGAGCCATGTTGGTATTGATCTCAACACTGTTGAGTCTGTGGCTTCTGTTAATTCAGGGATTGATTTGGTGGGTGGGAAGGAGATTACTGCTTGGGTTGAGTACAGAGATGATCTGAAGTTGGTTCGGGTTTGGGTCGGGTACTCGTCGGAGAATAAGCCTCCGAGTCCGGTTATTGTGGCCCAGATTGACCTCTCCAAGCAGTTCAAGGAGTTGGTGTATGTGGGGTTCTGTGCCGCAAATAGGAAGGGGTCTTCGGCCTACATTGTTGATAGTTGGAGGTTCAAGACTTTTAATGGGTCTCTGCCTTCGGTGATTCCTATGGATTTTTGGGAGGAGCAGGACTGCTTCATGTGTGGAGATTCGAGTATCGACATCACTTCTGTTCATGTAAGGAAAACAAGGATAGTGGTGGAGATTGCTTTCGGGTGCAGTTTTGGTGATTTGTTGCGTGTGTGCAAAGAGGAGGAAGGGGAGTGGCGGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

316

Amino Acids

35.05

Weight (kDa)

4.92

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	36 - 250	4.9e-49	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	4 cut(s)	170, 286, 696, 940
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	4 cut(s)	34, 190, 563, 602
AfiI	CCNNNNNNNGG	3 cut(s)	207, 378, 702
AgsI	TTSAA	3 cut(s)	55, 667, 745
AluBI	AGCT	1 cut(s)	369
AluI	AGCT	1 cut(s)	369
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	4 cut(s)	164, 318, 395, 765
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	639, 717
ApoI	RAATTY	1 cut(s)	419
AseI	ATTAAT	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	7 cut(s)	74, 109, 283, 295, 337, 784, 911
BbsI	GAAGAC	2 cut(s)	40, 705
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	4 cut(s)	164, 318, 395, 765
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	3 cut(s)	170, 286, 696
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	171, 287, 697
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	1 cut(s)	464
BmrI	ACTGGG	2 cut(s)	180, 230
BmuI	ACTGGG	2 cut(s)	180, 230
BpiI	GAAGAC	2 cut(s)	40, 705
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	395, 765
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	320, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 378, 702
Bse1I	ACTGG	3 cut(s)	186, 236, 429
BseAI	TCCGGA	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	207, 378, 702
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	3 cut(s)	186, 236, 429
BseRI	GAGGAG	3 cut(s)	361, 809, 938
BsgI	GTGCAG	1 cut(s)	910
BshFI	GGCC	2 cut(s)	641, 719
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	321, 629
BslI	CCNNNNNNNGG	3 cut(s)	207, 378, 702
BsmAI	GTCTC	4 cut(s)	164, 318, 395, 765
BsmBI	CGTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	641, 719
Bso31I	GGTCTC	2 cut(s)	395, 765
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	300, 342, 478, 571
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	4 cut(s)	170, 286, 696, 940
BspANI	GGCC	2 cut(s)	641, 719
BspCNI	CTCAG	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	395, 765
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	186, 236, 429
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	300, 342, 478, 571
BssNI	GRCGYC	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	3 cut(s)	32, 128, 322
BstACI	GRCGYC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	303, 345, 481, 574
BstMAI	GTCTC	4 cut(s)	164, 318, 395, 765
BstMBI	GATC	4 cut(s)	300, 342, 478, 571
BstV2I	GAAGAC	2 cut(s)	40, 705
BsuRI	GGCC	2 cut(s)	641, 719
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	640
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	4 cut(s)	33, 189, 562, 601
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	5 cut(s)	331, 385, 467, 811, 848
CviQI	GTAC	4 cut(s)	33, 189, 562, 601
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	4 cut(s)	302, 344, 480, 573
DpnII	GATC	4 cut(s)	300, 342, 478, 571
Eam1104I	CTCTTC	3 cut(s)	32, 128, 322
EarI	CTCTTC	3 cut(s)	32, 128, 322
Eco31I	GGTCTC	2 cut(s)	395, 765
Eco57I	CTGAAG	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	5 cut(s)	334, 388, 470, 814, 851
FaiI	YATR	9 cut(s)	16, 332, 356, 386, 468, 681, 782, 812, 849
FatI	CATG	5 cut(s)	330, 384, 466, 810, 847
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	170, 286, 696
Fsp4HI	GCNGC	3 cut(s)	170, 286, 696
GluI	GCNGC	3 cut(s)	170, 286, 696
HaeIII	GGCC	2 cut(s)	641, 719
HapII	CCGG	2 cut(s)	321, 629
HgaI	GACGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	334, 388, 470, 814, 851
HinfI	GANTC	5 cut(s)	401, 494, 625, 775, 821
HpaII	CCGG	2 cut(s)	321, 629
HphI	GGTGA	7 cut(s)	74, 109, 283, 295, 337, 784, 911
Hpy188I	TCNGA	5 cut(s)	202, 215, 576, 610, 624
Hpy188III	TCNNGA	5 cut(s)	248, 280, 298, 321, 745
Hpy99I	CGWCG	2 cut(s)	134, 610
HpyAV	CCTTC	7 cut(s)	81, 232, 304, 532, 700, 777, 923
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	3 cut(s)	10, 891, 918
HpyF3I	CTNAG	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	334, 388, 470, 814, 851
Kpn2I	TCCGGA	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	300, 342, 478, 571
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	374, 462, 796
MalI	GATC	4 cut(s)	302, 344, 480, 573
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	4 cut(s)	300, 342, 478, 571
MboII	GAAGA	6 cut(s)	19, 40, 43, 115, 309, 705
MfeI	CAATTG	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	3 cut(s)	308, 419, 511
MlyI	GAGTC	2 cut(s)	503, 634
MmeI	TCCRAC	4 cut(s)	122, 255, 588, 716
Mph1103I	ATGCAT	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	320
MseI	TTAA	3 cut(s)	456, 510, 753
MspI	CCGG	2 cut(s)	321, 629
MunI	CAATTG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	10
NdeII	GATC	4 cut(s)	300, 342, 478, 571
NlaIII	CATG	5 cut(s)	334, 388, 470, 814, 851
NlaIV	GGNNCC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	322
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	401, 775, 821
PkrI	GCNGC	3 cut(s)	171, 287, 697
PleI	GAGTC	2 cut(s)	502, 633
PpsI	GAGTC	2 cut(s)	502, 633
PshBI	ATTAAT	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	640
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
RsaI	GTAC	4 cut(s)	34, 190, 563, 602
RsaNI	GTAC	4 cut(s)	33, 189, 562, 601
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	456, 510, 753
SatI	GCNGC	3 cut(s)	170, 286, 696
Sau3AI	GATC	4 cut(s)	300, 342, 478, 571
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	2 cut(s)	503, 634
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	9 cut(s)	60, 182, 200, 207, 296, 350, 371, 654, 743
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	3 cut(s)	308, 419, 511
SsiI	CCGC	4 cut(s)	170, 286, 696, 940
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	4 cut(s)	299, 423, 824, 831
TasI	AATT	3 cut(s)	308, 419, 511
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	3 cut(s)	172, 288, 698
TfiI	GAWTC	3 cut(s)	401, 775, 821
Tru1I	TTAA	3 cut(s)	456, 510, 753
Tru9I	TTAA	3 cut(s)	456, 510, 753
TscAI	CASTG	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	373, 799, 836
TspRI	CASTG	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.