Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Reverse (-)

57260651 .. 57266207

Gene Structure 5557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG408000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGACAATGCATTCATACCCATTTCTCTTCTGTACCCTCTTCTTTATCTTCTTCAACCTCACTTTCCCTCCTTCACTCTCTCACCCACTTCCCCCTCCAACTCCATCAAACAACATCACCCTCTTCGGCGACGCCTCCATTACCCACAACGCCATTAGTCTCGCTCAGCCGCTCTCCACCTGCCCCAGTACCAACACCTCCGAGGTTCGGGTCGGAGAAGCCTTCTATTCCAACCCAGTTCGTTTTCTTGACCCCAAAACCAAAGACTTCGCCTCTTTCTTGAGCCGCTTCACCTTCTCGATCACCCAATTGTGCTCTTCCGGAGACGGCATGGCGTTTGTGATCACCTCTGATATGGAGGGCTTCAGCTCCTCAAAAGGGTTCATGGGTCTCCCCCAAGATTCGTTCTTTGCTGTGGAATTTGATACCAGTTTTGACCCTGTGGTTGATGACATTAATGGGAGCCATGTTGGTATTGATCTCAACACTGTTGAGTCTGTGGCTTCTGTTAATGCAGGGATTGATTTGGTGGGTGGGAAGGAGATTACTGCTTGGGTTGAGTACAGAGATGATCTGAAGTTGGTTCGGGTTTGGGTCGGGTACTCGTCGGAGAATAAGCCTCCGAGTCCGGTTATTGTGGCCCAGATTGACCTCTCTAAGCAGTTCAAGGAGTTGGTGTATGTGGGGTTCTGTGCCGCAAATAGGAAGGGGTCTTCGGCCTACATTGTTGATAGTTGGAGGTTCAAGACTTTTAATGGGTCTCTGCCTTCGGTGATTCCTATGGATTTTTGGGAGGAGCAGGACTGCTTCATGTGTGGAGATTCGAGTATCGACATCACTTCTGTTCATGTAAGGAAAACAAGGATAGTGGTGGAGATTGCTTTCGGGTTGGTAGGTTTAGCTGCATTTGTGTTATCTGTAGGTGCAGTTTTGGTGATTTGTTGCGTGTGTGCAAAGAAGAGGAAGGGGAGTGGCGGAAGAAGTAGACGAGGGCTGTGTTGTAGAGTTGAGACGAGCAGAGTTCCAACGAGTTTGTCACTGGCGGAGATAACATCAGCTACAATGGGGTTTGATAGAAGCAGAATTGTTGGGGAAGGAGCAACAGCTAAGGTTTACAGAGGGTCTCTGTTATCTGGTGGAGAAGTGGCAGTCAAAAGGTTCAGCAGGGCTAATGGGATTGATCATTTGGGCGATGATGTAGATGGTTCACTGAGTCGACAGACTGAGAGTGCAAGGCTCAAGGGTGCAAGGCATGTCTTGGATATTGTTGCTGATGTTGTCGAGGACGAGGGTTTGCAGGAGATTCATAAATGTAACCACAAACTTATATGGAAAGAGTACAGTATCACAAAACATGCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

454

Amino Acids

49.54

Weight (kDa)

6.09

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	36 - 250	7.8e-49	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	2 cut(s)	985, 1216
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	5 cut(s)	170, 286, 696, 975, 1043
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	349, 596
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	5 cut(s)	34, 190, 563, 602, 1340
AfiI	CCNNNNNNNGG	3 cut(s)	207, 378, 702
AgsI	TTSAA	3 cut(s)	55, 667, 745
AluBI	AGCT	4 cut(s)	369, 902, 1058, 1106
AluI	AGCT	4 cut(s)	369, 902, 1058, 1106
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	6 cut(s)	164, 318, 395, 765, 1004, 1128
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	639, 717
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	1 cut(s)	419
AseI	ATTAAT	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	7 cut(s)	74, 109, 283, 295, 337, 784, 946
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	2 cut(s)	112, 1196
BceAI	ACGGC	1 cut(s)	343
BclI	TGATCA	2 cut(s)	342, 1180
BcoDI	GTCTC	6 cut(s)	164, 318, 395, 765, 1004, 1128
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	4 cut(s)	170, 286, 696, 903
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	4 cut(s)	171, 287, 697, 904
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	1 cut(s)	464
BmrI	ACTGGG	2 cut(s)	180, 230
BmuI	ACTGGG	2 cut(s)	180, 230
BpiI	GAAGAC	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	1107
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	301, 1223
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	3 cut(s)	395, 765, 1128
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	320, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 378, 702
Bse1I	ACTGG	4 cut(s)	186, 236, 429, 1044
BseAI	TCCGGA	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	207, 378, 702
BseMII	CTCAG	3 cut(s)	179, 1202, 1215
BseNI	ACTGG	4 cut(s)	186, 236, 429, 1044
BseRI	GAGGAG	2 cut(s)	361, 809
BseXI	GCAGC	1 cut(s)	889
BsgI	GTGCAG	1 cut(s)	945
BshFI	GGCC	2 cut(s)	641, 719
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	321, 629
BslI	CCNNNNNNNGG	3 cut(s)	207, 378, 702
BsmAI	GTCTC	6 cut(s)	164, 318, 395, 765, 1004, 1128
BsmBI	CGTCTC	2 cut(s)	318, 1004
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	641, 719
Bso31I	GGTCTC	3 cut(s)	395, 765, 1128
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	300, 342, 478, 571, 1180
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	5 cut(s)	170, 286, 696, 975, 1043
BspANI	GGCC	2 cut(s)	641, 719
BspCNI	CTCAG	3 cut(s)	178, 1203, 1216
BspEI	TCCGGA	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	322
BspTNI	GGTCTC	3 cut(s)	395, 765, 1128
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	4 cut(s)	186, 236, 429, 1044
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	5 cut(s)	300, 342, 478, 571, 1180
BssNI	GRCGYC	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	490, 1343
Bst6I	CTCTTC	5 cut(s)	32, 44, 128, 322, 953
BstACI	GRCGYC	1 cut(s)	132
BstDEI	CTNAG	5 cut(s)	165, 657, 1107, 1211, 1224
BstKTI	GATC	5 cut(s)	303, 345, 481, 574, 1183
BstMAI	GTCTC	6 cut(s)	164, 318, 395, 765, 1004, 1128
BstMBI	GATC	5 cut(s)	300, 342, 478, 571, 1180
BstNSI	RCATGY	2 cut(s)	1256, 1358
BstSFI	CTRYAG	1 cut(s)	918
BstV1I	GCAGC	1 cut(s)	889
BstV2I	GAAGAC	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	641, 719
BtgZI	GCGATG	1 cut(s)	1206
BtsIMutI	CAGTG	3 cut(s)	486, 1037, 1208
BveI	ACCTGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	640
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	5 cut(s)	33, 189, 562, 601, 1339
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	7 cut(s)	331, 385, 467, 811, 848, 1253, 1355
CviQI	GTAC	5 cut(s)	33, 189, 562, 601, 1339
DdeI	CTNAG	5 cut(s)	165, 657, 1107, 1211, 1224
DpnI	GATC	5 cut(s)	302, 344, 480, 573, 1182
DpnII	GATC	5 cut(s)	300, 342, 478, 571, 1180
Eam1104I	CTCTTC	5 cut(s)	32, 44, 128, 322, 953
EarI	CTCTTC	5 cut(s)	32, 44, 128, 322, 953
EciI	GGCGGA	2 cut(s)	990, 1058
Eco31I	GGTCTC	3 cut(s)	395, 765, 1128
Eco57I	CTGAAG	2 cut(s)	349, 596
EcoT22I	ATGCAT	1 cut(s)	12
Esp3I	CGTCTC	2 cut(s)	318, 1004
FaeI	CATG	7 cut(s)	334, 388, 470, 814, 851, 1256, 1358
FatI	CATG	7 cut(s)	330, 384, 466, 810, 847, 1252, 1354
FbaI	TGATCA	2 cut(s)	342, 1180
FblI	GTMKAC	2 cut(s)	985, 1216
Fnu4HI	GCNGC	4 cut(s)	170, 286, 696, 903
Fsp4HI	GCNGC	4 cut(s)	170, 286, 696, 903
GluI	GCNGC	4 cut(s)	170, 286, 696, 903
HaeIII	GGCC	2 cut(s)	641, 719
HapII	CCGG	2 cut(s)	321, 629
HgaI	GACGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	334, 388, 470, 814, 851, 1256, 1358
HincII	GTYRAC	1 cut(s)	1217
HindII	GTYRAC	1 cut(s)	1217
HinfI	GANTC	7 cut(s)	401, 494, 625, 775, 821, 1213, 1303
HpaII	CCGG	2 cut(s)	321, 629
HphI	GGTGA	7 cut(s)	74, 109, 283, 295, 337, 784, 946
Hpy166II	GTNNAC	4 cut(s)	986, 1114, 1208, 1217
Hpy188I	TCNGA	6 cut(s)	202, 215, 352, 576, 610, 624
Hpy188III	TCNNGA	5 cut(s)	248, 280, 298, 321, 745
Hpy8I	GTNNAC	4 cut(s)	986, 1114, 1208, 1217
Hpy99I	CGWCG	2 cut(s)	134, 610
HpyAV	CCTTC	8 cut(s)	81, 232, 304, 532, 700, 777, 958, 1088
HpyCH4III	ACNGT	2 cut(s)	490, 1343
HpyCH4V	TGCA	8 cut(s)	10, 515, 905, 926, 953, 1232, 1247, 1297
HpyF3I	CTNAG	5 cut(s)	165, 657, 1107, 1211, 1224
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	334, 388, 470, 814, 851, 1256, 1358
Kpn2I	TCCGGA	1 cut(s)	320
Ksp22I	TGATCA	2 cut(s)	342, 1180
Kzo9I	GATC	5 cut(s)	300, 342, 478, 571, 1180
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	4 cut(s)	374, 462, 796, 1097
Lsp1109I	GCAGC	1 cut(s)	889
MaeIII	GTNAC	2 cut(s)	1035, 1313
MalI	GATC	5 cut(s)	302, 344, 480, 573, 1182
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	5 cut(s)	300, 342, 478, 571, 1180
MboII	GAAGA	9 cut(s)	19, 31, 40, 43, 115, 309, 705, 970, 990
MfeI	CAATTG	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	3 cut(s)	308, 419, 1083
MlyI	GAGTC	3 cut(s)	503, 634, 1222
MmeI	TCCRAC	6 cut(s)	122, 193, 255, 588, 716, 1049
Mph1103I	ATGCAT	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	320
MseI	TTAA	3 cut(s)	456, 510, 753
MspI	CCGG	2 cut(s)	321, 629
MunI	CAATTG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	10
NdeII	GATC	5 cut(s)	300, 342, 478, 571, 1180
NlaIII	CATG	7 cut(s)	334, 388, 470, 814, 851, 1256, 1358
NlaIV	GGNNCC	1 cut(s)	464
NmuCI	GTSAC	1 cut(s)	1035
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	1256, 1358
PaqCI	CACCTGC	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	322
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	4 cut(s)	401, 775, 821, 1303
PkrI	GCNGC	4 cut(s)	171, 287, 697, 904
PleI	GAGTC	3 cut(s)	502, 633, 1221
PpsI	GAGTC	3 cut(s)	502, 633, 1221
PshBI	ATTAAT	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	640
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
RsaI	GTAC	5 cut(s)	34, 190, 563, 602, 1340
RsaNI	GTAC	5 cut(s)	33, 189, 562, 601, 1339
SalI	GTCGAC	1 cut(s)	1215
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	456, 510, 753
SatI	GCNGC	4 cut(s)	170, 286, 696, 903
Sau3AI	GATC	5 cut(s)	300, 342, 478, 571, 1180
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	3 cut(s)	503, 634, 1222
SduI	GDGCHC	1 cut(s)	317
SfcI	CTRYAG	1 cut(s)	918
SmlI	CTYRAG	2 cut(s)	280, 1238
SmoI	CTYRAG	2 cut(s)	280, 1238
Sse9I	AATT	3 cut(s)	308, 419, 1083
SsiI	CCGC	5 cut(s)	170, 286, 696, 975, 1043
TaaI	ACNGT	2 cut(s)	490, 1343
TaqI	TCGA	5 cut(s)	299, 824, 831, 1216, 1281
TasI	AATT	3 cut(s)	308, 419, 1083
TatI	WGTACW	2 cut(s)	561, 1338
TauI	GCSGC	3 cut(s)	172, 288, 698
TfiI	GAWTC	4 cut(s)	401, 775, 821, 1303
Tru1I	TTAA	3 cut(s)	456, 510, 753
Tru9I	TTAA	3 cut(s)	456, 510, 753
TscAI	CASTG	3 cut(s)	493, 1044, 1215
TseFI	GTSAC	1 cut(s)	1035
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	1035
TspDTI	ATGAA	4 cut(s)	373, 799, 836, 1295
TspRI	CASTG	3 cut(s)	493, 1044, 1215
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	419
XceI	RCATGY	2 cut(s)	1256, 1358
XmiI	GTMKAC	2 cut(s)	985, 1216
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.