Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

2467474 .. 2468050

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1019500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGGGTTGTTTGCGGCAGAAGAATCTGGTTCAGCTTCATGGGTGGTGCTGTGAGGGTAATGAGTTAGTCCTGGTGTACGAGTACATTGCCCAACGGAAGCCTCAACAAATTCTCGGAGTCGCTTTTCCTCTTGCATATCTTCACGAGGAGTGTGAGAGGCAAATAATTCACAGAGATGTTAAAACTTGCAACATAATGCTCGATGCAGATTTTAACGCCAAACTAGGGGATTTTGGTCTAGCAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

5.23

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	38 - 83	1.6e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	44 - 83	5.8e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	2 cut(s)	80, 86
AfiI	CCNNNNNNNGG	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	111
BauI	CACGAG	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	74
BfaI	CTAG	2 cut(s)	227, 242
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	79, 85
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	2 cut(s)	37, 103
CviKI_1	RGCY	2 cut(s)	37, 103
CviQI	GTAC	2 cut(s)	79, 85
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	44
FaiI	YATR	3 cut(s)	42, 139, 197
FatI	CATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	227, 242
GluI	GCNGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	2 cut(s)	25, 120
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	137, 192, 209
Hsp92II	CATG	1 cut(s)	44
LpnPI	CCDG	3 cut(s)	14, 59, 86
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	227, 242
MboII	GAAGA	2 cut(s)	34, 134
MluCI	AATT	2 cut(s)	111, 168
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	49, 114, 141, 142, 153
MseI	TTAA	2 cut(s)	183, 216
MslI	CAYNNNNRTG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
NlaIII	CATG	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
RsaI	GTAC	2 cut(s)	80, 86
RsaNI	GTAC	2 cut(s)	79, 85
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	183, 216
SatI	GCNGC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	111, 168
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	2 cut(s)	227, 242
StyD4I	CCNGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	111, 168
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	183, 216
Tru9I	TTAA	2 cut(s)	183, 216
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	112
XapI	RAATTY	1 cut(s)	111
XspI	CTAG	2 cut(s)	227, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.