Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Reverse (-)

55271385 .. 55277197

Gene Structure 5813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGGTTTGATAGAAGCAGAATTGTTGGGGAAGGAGCAACAGCTAAGGTTTACAGAGGGTCTCTGTTATCTGGTGGAGAAGTGGCAGTCAAAAGGTTCGGAAGGGCTAATGGGATTGATCGTTTGGGTAGTCCTTTTACTACTGAGTTTGCAACAATGGCAGGTATCTTTTCTGGTATTCACAATGTTCCTGTCTTGCTTTCATGTTTGTTTCAAGGCTATATAGTTTTCCAGTTGCTTGTAAATATCACAAAACATGTATGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

89

Amino Acids

9.62

Weight (kDa)

9.89

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	45, 144
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	152
CviAII	CATG	2 cut(s)	204, 257
CviJI	RGCY	3 cut(s)	44, 107, 219
CviKI_1	RGCY	3 cut(s)	44, 107, 219
DdeI	CTNAG	2 cut(s)	45, 144
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	207, 260
FaiI	YATR	5 cut(s)	205, 222, 224, 258, 262
FatI	CATG	2 cut(s)	203, 256
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	268
GluI	GCNGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	207, 260
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	26, 96
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	45, 144
Hsp92II	CATG	2 cut(s)	207, 260
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	57, 147, 159, 204, 245
MaeI	CTAG	1 cut(s)	268
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	207, 260
NspI	RCATGY	1 cut(s)	260
PciI	ACATGT	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	266
PscI	ACATGT	1 cut(s)	256
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	4 cut(s)	46, 51, 98, 166
SgeI	CNNG	9 cut(s)	84, 174, 186, 203, 208, 216, 227, 244, 251
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	268
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	192
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.