Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

22160274 .. 22162348

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACAATGCACTCACACCCATTCGCCTTCTGCACCCTTTTCTTGATCTTGTTCAACCTCACCCTCTCCCACCCTGTTTCCCCCCCACCGCCATCAACCAACATCACCCTCTTCGGCGACGCCTCCATAACCCACAACGCCATCAGCCTCACTCAGCCGCTCTCCACCTGCCCAAGCACCGACGCCTCCGAGGTCAGGGCCGGCGGAGCCTTCTACTCCAACCCATTTCGGTTTCTTGACCCCGAAACCCAAGTCTTCGCCTCTTTCTTGAGCCGCTTCACTTTCACCATCACCCAGTTGTGCTCTTCCGGCGACGGCATGGCGTTTGTACTCACCTCCGACCTGGAGGGTTTAAGCTACTCGAGAGGGTCTATGGGTCTTCCTCAAGATTCGTTCTTTGCTGTGGAATTTGATACCCTTTTTGACCCTGTGGTGGATGACGTGAATGGCAGCCATGTGGGGATTGATCTCAACACTGTTGAGAGTGTGGCTTCTGTTAATGCTGGGGTTGATTTGGTGGGTGGGAAAGAGATTACTGCTTGGATTGAGTACAGAGATGATCTGAAATTGGTTCGGGTTGGGGTCGGGCATTCGCCGGAGAATAAGCCTCCGAGTCCGGTTATTGCGGCCCAGATTGACCTTTCCATGCAATTCAATGAGTTGGTGTATGTGGGCTTGACTGCTTCTAATGGGAAGGGCGGCTCTTCTGCCTACATTGTTAGTAGTTGGTGGTTCAAGACTTTCAATGGGTCTCTGCCTTCTGTGCTTCCTATGGATTTCTGGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

28.44

Weight (kDa)

4.49

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	32 - 247	5.2e-46	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	6 cut(s)	89, 158, 204, 274, 626, 699
AcsI	RAATTY	1 cut(s)	407
AcyI	GRCGYC	2 cut(s)	120, 183
AfaI	GTAC	2 cut(s)	330, 551
AfiI	CCNNNNNNNGG	2 cut(s)	195, 433
AgsI	TTSAA	4 cut(s)	55, 655, 736, 745
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	357
AluI	AGCT	1 cut(s)	357
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	756
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	198, 627
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspS9I	GGNCC	2 cut(s)	198, 628
AsuHPI	GGTGA	5 cut(s)	52, 97, 277, 283, 325
AvaI	CYCGRG	1 cut(s)	361
BbsI	GAAGAC	2 cut(s)	247, 371
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	3 cut(s)	100, 149, 296
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	158, 274, 451, 627, 700
BlsI	GCNGC	5 cut(s)	159, 275, 452, 628, 701
Bme1390I	CCNGG	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	198, 628
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	247, 371
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	289, 369
BsaHI	GRCGYC	2 cut(s)	120, 183
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 433
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	2 cut(s)	195, 433
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	462
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	200, 629
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	201, 309, 596, 617
BslI	CCNNNNNNNGG	2 cut(s)	195, 433
BsmAI	GTCTC	1 cut(s)	756
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	200, 629
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	45, 466, 559
BspACI	CCGC	6 cut(s)	89, 158, 204, 274, 626, 699
BspANI	GGCC	2 cut(s)	200, 629
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	176
BspQI	GCTCTTC	2 cut(s)	310, 709
BspTNI	GGTCTC	1 cut(s)	756
BsrBI	CCGCTC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	45, 466, 559
BssNI	GRCGYC	2 cut(s)	120, 183
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	3 cut(s)	116, 310, 709
BstACI	GRCGYC	2 cut(s)	120, 183
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	3 cut(s)	48, 469, 562
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	3 cut(s)	45, 466, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 309, 763
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	2 cut(s)	247, 371
BsuRI	GGCC	2 cut(s)	200, 629
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	198, 628
CseI	GACGC	2 cut(s)	128, 191
Csp6I	GTAC	2 cut(s)	329, 550
CviAII	CATG	3 cut(s)	319, 455, 646
CviQI	GTAC	2 cut(s)	329, 550
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	47, 468, 561
DpnII	GATC	3 cut(s)	45, 466, 559
Eam1104I	CTCTTC	3 cut(s)	116, 310, 709
EarI	CTCTTC	3 cut(s)	116, 310, 709
EciI	GGCGGA	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	322, 458, 649
FaiI	YATR	7 cut(s)	128, 320, 374, 456, 647, 669, 773
FatI	CATG	3 cut(s)	318, 454, 645
Fnu4HI	GCNGC	5 cut(s)	158, 274, 451, 627, 700
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	5 cut(s)	158, 274, 451, 627, 700
GluI	GCNGC	5 cut(s)	158, 274, 451, 627, 700
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	200, 629
HapII	CCGG	4 cut(s)	201, 309, 596, 617
HgaI	GACGC	2 cut(s)	128, 191
Hin1I	GRCGYC	2 cut(s)	120, 183
Hin1II	CATG	3 cut(s)	322, 458, 649
HinfI	GANTC	2 cut(s)	389, 613
HpaII	CCGG	4 cut(s)	201, 309, 596, 617
HphI	GGTGA	5 cut(s)	52, 97, 277, 283, 325
Hpy188I	TCNGA	4 cut(s)	190, 340, 564, 612
Hpy188III	TCNNGA	6 cut(s)	43, 236, 268, 363, 386, 736
Hpy99I	CGWCG	3 cut(s)	122, 185, 317
HpyAV	CCTTC	4 cut(s)	37, 220, 688, 768
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	10, 33, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 309, 763
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	2 cut(s)	120, 183
Hsp92II	CATG	3 cut(s)	322, 458, 649
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	45, 466, 559
LguI	GCTCTTC	2 cut(s)	310, 709
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	1 cut(s)	462
MaeII	ACGT	1 cut(s)	441
MalI	GATC	3 cut(s)	47, 468, 561
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	3 cut(s)	45, 466, 559
MboII	GAAGA	5 cut(s)	103, 247, 297, 371, 696
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	3 cut(s)	407, 566, 650
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	2 cut(s)	243, 363
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	2 cut(s)	353, 498
MspI	CCGG	4 cut(s)	201, 309, 596, 617
MspR9I	CCNGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	206, 309, 763
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	3 cut(s)	45, 466, 559
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	322, 458, 649
NlaIV	GGNNCC	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	176
PciSI	GCTCTTC	2 cut(s)	310, 709
PctI	GAATGC	1 cut(s)	589
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	159, 275, 452, 628, 701
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	198, 628
RsaI	GTAC	2 cut(s)	330, 551
RsaNI	GTAC	2 cut(s)	329, 550
SapI	GCTCTTC	2 cut(s)	310, 709
SaqAI	TTAA	2 cut(s)	353, 498
SatI	GCNGC	5 cut(s)	158, 274, 451, 627, 700
Sau3AI	GATC	3 cut(s)	45, 466, 559
Sau96I	GGNCC	2 cut(s)	198, 628
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	8 cut(s)	60, 170, 195, 338, 345, 359, 444, 642
Sfr274I	CTCGAG	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	361
SmlI	CTYRAG	3 cut(s)	268, 361, 384
SmoI	CTYRAG	3 cut(s)	268, 361, 384
Sse9I	AATT	3 cut(s)	407, 566, 650
SsiI	CCGC	6 cut(s)	89, 158, 204, 274, 626, 699
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	362
TasI	AATT	3 cut(s)	407, 566, 650
TatI	WGTACW	2 cut(s)	328, 549
TauI	GCSGC	4 cut(s)	160, 276, 629, 702
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	353, 498
Tru9I	TTAA	2 cut(s)	353, 498
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	1 cut(s)	450
TspRI	CASTG	1 cut(s)	481
XapI	RAATTY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.