Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Forward (+)

2483853 .. 2484495

Gene Structure 643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1019800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCATTCATCTCGTCCATTTCTCTTCTGTGTCCTTTTCTTTTTCGTCTCCAACCTCAGTTTCCCTTCGCTTTCTGTCCCGTTCTTGCCTGCGACGAACAATAACCTCACCCTCTTAGGCGACGCTTCCATCACCAACAACGCCATTAGTCTCACTAAAGAACTCACCACATGCCCCTCCTCTTTCCCTTCTGCTTCTTCTGGCGTTGGAAGAGCATTTTACGCCTACCCAATTCGGTTTCTTGACTTGAAAACCAACGCCACTGCCTCTTTCTTGTGCCGATTCTCTTTCTCAATCACTCCAAGTTCCCAATTGTGTTCTTCTGGAGATGGCATTGCGTTTGTGATCACCCCCGATGTTGATTCTCTGGGATCATCCAGAGGATTTGATTTGACAAGTGGGAGGGAGATTACTCCTTGGATTGAGTACAGAGATGCTGTCAAGCTGATTCGGGTTTGGGTTGGATACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.11

Weight (kDa)

7.66

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	30 - 121	3.4e-17	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	379
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	52, 155
AlwI	GGATC	1 cut(s)	379
AsuHPI	GGTGA	4 cut(s)	100, 124, 157, 340
BccI	CCATC	2 cut(s)	137, 323
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	458
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	52, 155
BfuI	GTATCC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	52, 155
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	4
Bsp143I	GATC	2 cut(s)	345, 371
BspCNI	CTCAG	1 cut(s)	69
BspPI	GGATC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	2 cut(s)	345, 371
BssT1I	CCWWGG	1 cut(s)	416
Bst6I	CTCTTC	2 cut(s)	29, 205
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	56, 115
BstF5I	GGATG	1 cut(s)	374
BstKTI	GATC	2 cut(s)	348, 374
BstMAI	GTCTC	2 cut(s)	52, 155
BstMBI	GATC	2 cut(s)	345, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	90
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	1 cut(s)	445
CviKI_1	RGCY	1 cut(s)	445
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	56, 115
DpnI	GATC	2 cut(s)	347, 373
DpnII	GATC	2 cut(s)	345, 371
Eam1104I	CTCTTC	2 cut(s)	29, 205
EarI	CTCTTC	2 cut(s)	29, 205
Eco130I	CCWWGG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	174
FaiI	YATR	1 cut(s)	172
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	345
FokI	GGATG	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	3 cut(s)	282, 362, 448
HphI	GGTGA	4 cut(s)	100, 124, 157, 340
Hpy188III	TCNNGA	4 cut(s)	242, 324, 378, 471
Hpy99I	CGWCG	2 cut(s)	97, 125
HpyAV	CCTTC	2 cut(s)	75, 198
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	56, 115
Hsp92II	CATG	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	345, 371
LguI	GCTCTTC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	102, 186, 309, 353, 391
LweI	GCATC	1 cut(s)	424
MalI	GATC	2 cut(s)	347, 373
MboI	GATC	2 cut(s)	345, 371
MboII	GAAGA	4 cut(s)	16, 189, 222, 312
MfeI	CAATTG	1 cut(s)	311
MluCI	AATT	2 cut(s)	231, 311
MmeI	TCCRAC	3 cut(s)	75, 187, 442
MnlI	CCTC	8 cut(s)	65, 116, 122, 187, 190, 277, 374, 396
Mph1103I	ATGCAT	1 cut(s)	6
MunI	CAATTG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	4
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	2 cut(s)	345, 371
NlaIII	CATG	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	3 cut(s)	282, 362, 448
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	345, 371
SetI	ASST	3 cut(s)	57, 108, 447
SfaNI	GCATC	1 cut(s)	424
Sse9I	AATT	2 cut(s)	231, 311
StyI	CCWWGG	1 cut(s)	416
TasI	AATT	2 cut(s)	231, 311
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	3 cut(s)	282, 362, 448
TscAI	CASTG	1 cut(s)	268
TspRI	CASTG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.