Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Reverse (-)

42759669 .. 42771111

Gene Structure 11443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG389900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGACAATGCATTCATGCCCATTTCTCTTCTGGACCCTTTTCTTTATCTTCTTCAACCTCACTTTCCCTCCTTCACTCTCTCACCCACTTCCCCCTCCAACTCCATCGAACAACATCACCCTCTTCGGCGACGCCTCCATTACCCACAACGCCATTAGTCTCGCTCAGCCGCTCTCCACCTGCCCCAGTACCAACACCTCCGAGGTTCGGGTCGGAGAAGCCTTCTATTCCAACCCAGTTCGTTTTCTTGACCCCAAAACCAAAGACTTCGCCTCTTTCTTGAGCCGCTTCACCTTCTCCATCACCCAATTGTGTTCTTCCGGAGACGGCATGGCGTTTGTGATCACCTCTGATATGGAGGGTTTCAGCTCCTCAAAAGGGTTCATGGGTCTCCCCCAAGATTCGTTCTTTGCTGTGGAATTTGATACCAGTTTTGACCCTGTGGTTGATGACATTAATGGGAGCCATGTTGGTATTGATCTCAACACTGTTGAGTCTGTGGCTTCTGTTAATTCAGGGATTGATTTGGTGGGTGGGAAGGAGATTACTGCTTGGGTTGAGTACAGAGATGATCTGAAGTTGGTTCGGGTTTGGGTCGGGTACTCGTCGGAGAATAAGCCTCCGAGTCCGAGGAGGAAGGGGAGTGGCGGAAGAAGTAGACGAGGGCTGTGTTGTAGAGTTGAGACGAGTAGAGCTCCAACGAGTTTGTCACTGGCGGAGATAACATCAGCTACAATGGGGTTTGATAGAAGCAGAATTATTGGGGAAGGAGCAACAGCTAAGGTTTACAGAGGGTCTCTGTTATCTGGTGGAGAAGTGGCAGTCAAAAGGTTCGACAGGGCTAATGGGATTGATCGTTTGGGTAGTCCTTTTACTACTGAGTTTGCAACAATGGCAGGAAGGAATAAAGATGGCAGAACTTCCATAGATCGGCTTGTGTTATGGGAAAGCCTTCAGTCCTCTGACCTCACTTGGTTACTGAAGATGTACAGTATCACAAAACATATAAGCCATATTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

37.24

Weight (kDa)

6.6

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	36 - 210	1.3e-36	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	658
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	4 cut(s)	170, 286, 648, 716
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	3 cut(s)	596, 938, 1001
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	4 cut(s)	190, 563, 602, 989
AfiI	CCNNNNNNNGG	3 cut(s)	207, 378, 930
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	4 cut(s)	369, 695, 731, 779
AluI	AGCT	4 cut(s)	369, 695, 731, 779
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	5 cut(s)	164, 318, 395, 677, 801
Aor13HI	TCCGGA	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	419
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	951
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	5 cut(s)	74, 109, 283, 295, 337
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	697
Bbv12I	GWGCWC	1 cut(s)	697
BccI	CCATC	3 cut(s)	112, 308, 905
BceAI	ACGGC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	5 cut(s)	164, 318, 395, 677, 801
BfaI	CTAG	1 cut(s)	1021
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	170, 286
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	171, 287
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	35, 464
BmrI	ACTGGG	2 cut(s)	180, 230
BmuI	ACTGGG	2 cut(s)	180, 230
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	395, 801
BsaJI	CCNNGG	2 cut(s)	201, 629
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 378, 930
Bse1I	ACTGG	4 cut(s)	186, 236, 429, 717
BseAI	TCCGGA	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	201, 629
BseLI	CCNNNNNNNGG	3 cut(s)	207, 378, 930
BseMII	CTCAG	2 cut(s)	179, 870
BseNI	ACTGG	4 cut(s)	186, 236, 429, 717
BseRI	GAGGAG	2 cut(s)	361, 646
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	207, 378, 930
BsmAI	GTCTC	5 cut(s)	164, 318, 395, 677, 801
BsmBI	CGTCTC	2 cut(s)	318, 677
BsmI	GAATGC	1 cut(s)	10
Bso31I	GGTCTC	2 cut(s)	395, 801
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp13I	TCCGGA	1 cut(s)	320
Bsp1407I	TGTACA	1 cut(s)	987
Bsp143I	GATC	5 cut(s)	342, 478, 571, 853, 928
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	4 cut(s)	170, 286, 648, 716
BspCNI	CTCAG	2 cut(s)	178, 871
BspEI	TCCGGA	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	35, 464
BspMI	ACCTGC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	395, 801
BsrBI	CCGCTC	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	987
BsrI	ACTGG	4 cut(s)	186, 236, 429, 717
BssECI	CCNNGG	2 cut(s)	201, 629
BssMI	GATC	5 cut(s)	342, 478, 571, 853, 928
BssNI	GRCGYC	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	490, 992
Bst6I	CTCTTC	2 cut(s)	32, 128
BstACI	GRCGYC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	987
BstDEI	CTNAG	3 cut(s)	165, 780, 879
BstKTI	GATC	5 cut(s)	345, 481, 574, 856, 931
BstMAI	GTCTC	5 cut(s)	164, 318, 395, 677, 801
BstMBI	GATC	5 cut(s)	342, 478, 571, 853, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	893
BtsIMutI	CAGTG	2 cut(s)	486, 710
BveI	ACCTGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	4 cut(s)	189, 562, 601, 988
CviAII	CATG	4 cut(s)	15, 331, 385, 467
CviQI	GTAC	4 cut(s)	189, 562, 601, 988
DdeI	CTNAG	3 cut(s)	165, 780, 879
DpnI	GATC	5 cut(s)	344, 480, 573, 855, 930
DpnII	GATC	5 cut(s)	342, 478, 571, 853, 928
Eam1104I	CTCTTC	2 cut(s)	32, 128
EarI	CTCTTC	2 cut(s)	32, 128
EciI	GGCGGA	2 cut(s)	663, 731
Ecl136II	GAGCTC	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	697
Eco31I	GGTCTC	2 cut(s)	395, 801
Eco47I	GGWCC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	3 cut(s)	596, 938, 1001
EcoICRI	GAGCTC	1 cut(s)	695
EcoT22I	ATGCAT	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	697
Esp3I	CGTCTC	2 cut(s)	318, 677
FaeI	CATG	4 cut(s)	18, 334, 388, 470
FatI	CATG	4 cut(s)	14, 330, 384, 466
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	2 cut(s)	170, 286
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	2 cut(s)	170, 286
FspBI	CTAG	1 cut(s)	1021
GluI	GCNGC	2 cut(s)	170, 286
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	18, 334, 388, 470
HinfI	GANTC	3 cut(s)	401, 494, 625
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	5 cut(s)	74, 109, 283, 295, 337
Hpy166II	GTNNAC	2 cut(s)	659, 787
Hpy188I	TCNGA	8 cut(s)	202, 215, 352, 576, 610, 624, 630, 964
Hpy188III	TCNNGA	4 cut(s)	31, 248, 280, 321
Hpy8I	GTNNAC	2 cut(s)	659, 787
Hpy99I	CGWCG	2 cut(s)	134, 610
HpyAV	CCTTC	8 cut(s)	81, 232, 304, 532, 631, 761, 894, 962
HpyCH4III	ACNGT	2 cut(s)	490, 992
HpyCH4V	TGCA	2 cut(s)	10, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	893
HpyF3I	CTNAG	3 cut(s)	165, 780, 879
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	18, 334, 388, 470
Kpn2I	TCCGGA	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	342, 478, 571, 853, 928
LmnI	GCTCC	4 cut(s)	374, 462, 700, 770
MaeI	CTAG	1 cut(s)	1021
MaeIII	GTNAC	2 cut(s)	708, 975
MalI	GATC	5 cut(s)	344, 480, 573, 855, 930
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	5 cut(s)	342, 478, 571, 853, 928
MboII	GAAGA	7 cut(s)	19, 40, 43, 115, 309, 663, 994
MfeI	CAATTG	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	4 cut(s)	308, 419, 511, 756
MlyI	GAGTC	2 cut(s)	503, 634
MmeI	TCCRAC	5 cut(s)	122, 193, 255, 588, 722
Mph1103I	ATGCAT	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	951
MseI	TTAA	2 cut(s)	456, 510
MspI	CCGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	893
NdeII	GATC	5 cut(s)	342, 478, 571, 853, 928
NlaIII	CATG	4 cut(s)	18, 334, 388, 470
NlaIV	GGNNCC	2 cut(s)	35, 464
NmuCI	GTSAC	1 cut(s)	708
NsiI	ATGCAT	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	951
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	171, 287
PleI	GAGTC	2 cut(s)	502, 633
PpsI	GAGTC	2 cut(s)	502, 633
PshBI	ATTAAT	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	35, 464
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	4 cut(s)	190, 563, 602, 989
RsaNI	GTAC	4 cut(s)	189, 562, 601, 988
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	2 cut(s)	456, 510
SatI	GCNGC	2 cut(s)	170, 286
Sau3AI	GATC	5 cut(s)	342, 478, 571, 853, 928
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	2 cut(s)	503, 634
SduI	GDGCHC	1 cut(s)	697
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	4 cut(s)	308, 419, 511, 756
SsiI	CCGC	4 cut(s)	170, 286, 648, 716
SspMI	CTAG	1 cut(s)	1021
SstI	GAGCTC	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	490, 992
TaqI	TCGA	2 cut(s)	107, 834
TasI	AATT	4 cut(s)	308, 419, 511, 756
TatI	WGTACW	2 cut(s)	561, 987
TauI	GCSGC	2 cut(s)	172, 288
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	456, 510
Tru9I	TTAA	2 cut(s)	456, 510
TscAI	CASTG	2 cut(s)	493, 717
TseFI	GTSAC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	1 cut(s)	373
TspRI	CASTG	2 cut(s)	493, 717
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	658
XmnI	GAANNNNTTC	1 cut(s)	951
XspI	CTAG	1 cut(s)	1021
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.