Rw7G034110

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
50573435 .. 50575528
2094 bp
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UTR
Exon/CDS
Intron
Rw7G034110.1

Sequence Viewer

Length: 2058 bp
ATGACAATGCATTCATACCCATTTCTCTTCTGGACCCTTTTCTTTATCTTGTTCAACCTCACTTTCCCTCCTTCACTCTCTCACCCACTTCCCCCTCCAACTCCATCAAACAACATCACCCTCTTCGGCGACGCCTCCATTACCCACAACGCCATTAGTCTCGCTCAGCCGCTCTCCACCTGCCCCAGTACCAACACCTCCGAGGTTCGGGTCGGAGAAGCCTTCTATTCCAACCCAGTTCGTTTTCTTGACCCCAAAACCAAAGACTTCGCCTCTTTCTTGAGCCGCTTCACTTTCTCGATCACCCAATTGTGTTCTTCCGGAGACGGCATGGCGTTTGTGATCACCTCTAATATGGAGGGTTTCAGCTCCTCAAAAGGGTTCATGGGTCTCCCCCAAGATTCGTTCTTTTCTGTGGAATTTGATACCAGTTTTGACCCTGTGGTTGATGACATTAATGGGAGCCATGTTGGTATTGATCTCAACACTGTTGAGTCTGTGGCTTCTGTTAGTTCAGGGATTGATTTGGTGGGTGGGAAGGAGATTACTGCTTGGGTTGAGTACAGAGATGATCTGAAGTTGGTTCGGGTTTGGGTCGGGTACTCGTCGGAGAATAAGCCTCCGAGTCCGGTTATTGTGGCCCAGATTGACCTCTCTAAGCAGTTCAAGGAGTTGGTGTATGTGGGGTTCTGTGCCGCAAATAGGAAGGGGTCTTCGGCCTACATTGTTGATAGTTGGAGGTTCAAGACTTTTAATGGGTCTCTGCCTTCGGTGATTCCTATGGATTTTTGGGAGGAGCAGGACTGCTTCATGTGTGGAGATTCGAGTATCGACATCACTTCTGTTCATGTAAGGAAAACAAGGATAGTGGTGGAGATTGCTTTCGGGTTGGTAGGTTTAGCTGCATTTGTGTTATCCGTAGGTGCAGTTTTGGTGATTTGTTGTGTGTGTGCAAAGAAGAGGAAGGGGAGTGGCGGAAGAAGTAGACGAGGGCTGTGTTGTAGAGTTGAGACGAGTAGAGTTCCAACGAGTTTGTCACTGGCGGAGATAACATCAGCTACAATGGGGTTTGATAGAAGCAGAATTGTTGGGGAAGGAGCAACAGCTAAGGTTTACAGAGGGTCTCTGTTATCTGGTGGAGAAGTGGCAGTCAAAAGGTTCGGAAGGGCTAATGGGATTGATCGTTTGGGTAGTCCTTTTACTACTGAGTTTGCAACAATGGCAGGGTGTTTGCGGCACAAGAATTTGGTTCAGCTTCATGGCTGGTGCTGTGAGGGTAATGAGCTAGTTCTGGTGTATGAGTTCATGCCGAATGGAAGCCTCAACAAAATTCTCCACCGAAGCTTCAATTTGGCTGTTGTGTTATCTTGGAAGCAAAGACTTAATATCGTTCTTGGAGTTGCATCTGCTCTTGCATATCTTCATGAGGAGTGTGAGAGGCAGATAATTCACAGAGATGTTAAAACTTGTAACATAATGCTAGATGCAGAATTTAATGCGAAGCTTGGGGATTTTGGTCTAGCAGAAGTATATGAGCACAGTTCCATCACAAGAGAAGCGACCATACCAGCCGGAACAATGGGATATCTTGCTCCTGAATATGTATACTCTGGTGTTCCAACTGTTAAAACTGATGTCTACAGCTTTGGTGTGGTGGTGTTAGAGGTGGCAACAGGTAGAAAGCCAGTGGAGGATGATGGTACAGTGATTGTTGATTGGGTTTGGGGCCTGTGGGAAATGGGGAAACTGATTGAAGCTGCTGATTCAAGGCTGACTGGAAAGTTTGACAAGGTAGAGATGGAAAGGATGCTGATGACTGGACTTGCTTGTGTGCACCCAAACCATGTGAAGAGGCCAACAGTTAAAGAAGCTGCAAGGATATTACAAGGAGAAGCGCCACTTCCTGTATTGCCTGCAAGAAAACCTAGGGTGAGCATTCGACCTGTTTTTCATGATGATACTGAAGAAATCCGAAATTTCTGTGCTGGTAGGTTCAGCCTTGAACTTGATGATGTACCATATATGACCCCCAAAAGCCAATTTGGCAATGATCAGTAG

Protein Analysis

685

Amino Acids

75.42

Weight (kDa)

6.11

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 36 - 250 9.9e-48 Legume lectin domain
Pkinase PF00069 358 - 624 3.3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 360 - 624 1.6e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 3 cut(s) 985, 1605, 1638
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 6 cut(s) 170, 286, 696, 975, 1043, 1234
AcsI RAATTY 5 cut(s) 419, 1243, 1329, 1490, 1975
AcuI CTGAAG 2 cut(s) 596, 1983
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 5 cut(s) 190, 563, 602, 1702, 2016
AfiI CCNNNNNNNGG 3 cut(s) 207, 378, 702
AgsI TTSAA 7 cut(s) 55, 667, 745, 1348, 1754, 1767, 2003
Alw21I GWGCWC 2 cut(s) 1539, 1836
Alw26I GTCTC 6 cut(s) 164, 318, 395, 765, 1004, 1128
Alw44I GTGCAC 1 cut(s) 1832
Aor13HI TCCGGA 1 cut(s) 320
AoxI GGCC 4 cut(s) 639, 717, 1726, 1853
ApaLI GTGCAC 1 cut(s) 1832
ApeKI GCWGC 3 cut(s) 902, 1757, 1871
ApoI RAATTY 5 cut(s) 419, 1243, 1329, 1490, 1975
AseI ATTAAT 1 cut(s) 456
AspA2I CCTAGG 1 cut(s) 1925
AspLEI GCGC 1 cut(s) 1897
AspS9I GGNCC 3 cut(s) 33, 640, 1726
AsuHPI GGTGA 7 cut(s) 74, 109, 295, 337, 784, 946, 1942
AvaII GGWCC 1 cut(s) 33
AvrII CCTAGG 1 cut(s) 1925
BaeGI GKGCMC 1 cut(s) 1836
BarI GAAGNNNNNNTAC 2 cut(s) 1548, 1580
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 1539, 1836
BbvI GCAGC 3 cut(s) 889, 1744, 1858
BccI CCATC 4 cut(s) 112, 1553, 1691, 1792
BceAI ACGGC 1 cut(s) 343
BclI TGATCA 2 cut(s) 342, 2050
BcoDI GTCTC 6 cut(s) 164, 318, 395, 765, 1004, 1128
BfaI CTAG 4 cut(s) 1286, 1481, 1520, 1926
BfmI CTRYAG 1 cut(s) 1639
BfoI RGCGCY 1 cut(s) 1898
BfuAI ACCTGC 1 cut(s) 188
BglI GCCNNNNNGGC 1 cut(s) 2043
BisI GCNGC 7 cut(s) 170, 286, 696, 903, 1235, 1758, 1872
BlnI CCTAGG 1 cut(s) 1925
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 7 cut(s) 171, 287, 697, 904, 1236, 1759, 1873
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 3 cut(s) 33, 640, 1726
BmiI GGNNCC 3 cut(s) 35, 464, 1727
BmrI ACTGGG 2 cut(s) 180, 230
BmsI GCATC 3 cut(s) 1412, 1474, 1797
BmuI ACTGGG 2 cut(s) 180, 230
BpiI GAAGAC 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 1107
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 3 cut(s) 395, 765, 1128
BsaJI CCNNGG 2 cut(s) 201, 1925
BsaWI WCCGGW 2 cut(s) 320, 628
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 662, 692
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 378, 702
Bse1I ACTGG 7 cut(s) 186, 236, 429, 1044, 1685, 1780, 1822
Bse3DI GCAATG 1 cut(s) 2053
BseAI TCCGGA 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 201, 1925
BseGI GGATG 2 cut(s) 1699, 1812
BseLI CCNNNNNNNGG 3 cut(s) 207, 378, 702
BseMI GCAATG 1 cut(s) 2053
BseMII CTCAG 2 cut(s) 179, 1197
BseNI ACTGG 7 cut(s) 186, 236, 429, 1044, 1685, 1780, 1822
BseRI GAGGAG 3 cut(s) 361, 809, 1442
BseSI GKGCMC 1 cut(s) 1836
BseXI GCAGC 3 cut(s) 889, 1744, 1858
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 4 cut(s) 641, 719, 1728, 1855
BsiHKAI GWGCWC 2 cut(s) 1539, 1836
BsiSI CCGG 3 cut(s) 321, 629, 1572
BslI CCNNNNNNNGG 3 cut(s) 207, 378, 702
BsmAI GTCTC 6 cut(s) 164, 318, 395, 765, 1004, 1128
BsmBI CGTCTC 2 cut(s) 318, 1004
BsmI GAATGC 2 cut(s) 10, 1935
BsnI GGCC 4 cut(s) 641, 719, 1728, 1855
Bso31I GGTCTC 3 cut(s) 395, 765, 1128
Bsp1286I GDGCHC 2 cut(s) 1539, 1836
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 6 cut(s) 170, 286, 696, 975, 1043, 1234
BspANI GGCC 4 cut(s) 641, 719, 1728, 1855
BspCNI CTCAG 2 cut(s) 178, 1198
BspEI TCCGGA 1 cut(s) 320
BspHI TCATGA 2 cut(s) 1423, 1951
BspLI GGNNCC 3 cut(s) 35, 464, 1727
BspMI ACCTGC 1 cut(s) 188
BspTNI GGTCTC 3 cut(s) 395, 765, 1128
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 2053
BsrI ACTGG 7 cut(s) 186, 236, 429, 1044, 1685, 1780, 1822
BssECI CCNNGG 2 cut(s) 201, 1925
BssMI GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
BssNAI GTATAC 1 cut(s) 1606
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 1925
Bst1107I GTATAC 1 cut(s) 1606
Bst4CI ACNGT 5 cut(s) 490, 1541, 1624, 1705, 1861
Bst6I CTCTTC 4 cut(s) 32, 128, 953, 1844
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 1914
BstDEI CTNAG 4 cut(s) 165, 657, 1107, 1206
BstF5I GGATG 2 cut(s) 1699, 1812
BstH2I RGCGCY 1 cut(s) 1898
BstHHI GCGC 1 cut(s) 1897
BstKTI GATC 6 cut(s) 303, 345, 481, 574, 1183, 2053
BstMAI GTCTC 6 cut(s) 164, 318, 395, 765, 1004, 1128
BstMBI GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
BstMWI GCNNNNNNNGC 2 cut(s) 1220, 2043
BstSFI CTRYAG 1 cut(s) 1639
BstSLI GKGCMC 1 cut(s) 1836
BstV1I GCAGC 3 cut(s) 889, 1744, 1858
BstV2I GAAGAC 1 cut(s) 705
BstZ17I GTATAC 1 cut(s) 1606
BsuRI GGCC 4 cut(s) 641, 719, 1728, 1855
BtsCI GGATG 2 cut(s) 1699, 1812
BtsIMutI CAGTG 4 cut(s) 486, 1037, 1692, 1710
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 1914
CciI TCATGA 2 cut(s) 1423, 1951
CfoI GCGC 1 cut(s) 1897
Cfr13I GGNCC 3 cut(s) 33, 640, 1726
CseI GACGC 1 cut(s) 140
Csp6I GTAC 5 cut(s) 189, 562, 601, 1701, 2015
CspCI CAANNNNNGTGG 2 cut(s) 849, 884
CviQI GTAC 5 cut(s) 189, 562, 601, 1701, 2015
DdeI CTNAG 4 cut(s) 165, 657, 1107, 1206
DpnI GATC 6 cut(s) 302, 344, 480, 573, 1182, 2052
DpnII GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
Eam1104I CTCTTC 4 cut(s) 32, 128, 953, 1844
EarI CTCTTC 4 cut(s) 32, 128, 953, 1844
EciI GGCGGA 2 cut(s) 990, 1058
Eco130I CCWWGG 1 cut(s) 1925
Eco31I GGTCTC 3 cut(s) 395, 765, 1128
Eco32I GATATC 1 cut(s) 1586
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 596, 1983
EcoO109I RGGNCCY 1 cut(s) 1726
EcoRV GATATC 1 cut(s) 1586
EcoT14I CCWWGG 1 cut(s) 1925
EcoT22I ATGCAT 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 1925
Esp3I CGTCTC 2 cut(s) 318, 1004
FalI AAGNNNNNCTT 2 cut(s) 1884, 1916
FbaI TGATCA 2 cut(s) 342, 2050
FblI GTMKAC 3 cut(s) 985, 1605, 1638
Fnu4HI GCNGC 7 cut(s) 170, 286, 696, 903, 1235, 1758, 1872
FokI GGATG 2 cut(s) 1706, 1819
Fsp4HI GCNGC 7 cut(s) 170, 286, 696, 903, 1235, 1758, 1872
FspBI CTAG 4 cut(s) 1286, 1481, 1520, 1926
GlaI GCGC 1 cut(s) 1896
GluI GCNGC 7 cut(s) 170, 286, 696, 903, 1235, 1758, 1872
HaeII RGCGCY 1 cut(s) 1898
HaeIII GGCC 4 cut(s) 641, 719, 1728, 1855
HapII CCGG 3 cut(s) 321, 629, 1572
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 1897
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 1895
HinP1I GCGC 1 cut(s) 1895
HindIII AAGCTT 2 cut(s) 1342, 1502
HinfI GANTC 6 cut(s) 401, 494, 625, 775, 821, 1763
HpaII CCGG 3 cut(s) 321, 629, 1572
HphI GGTGA 7 cut(s) 74, 109, 295, 337, 784, 946, 1942
Hpy166II GTNNAC 5 cut(s) 986, 1114, 1606, 1639, 1834
Hpy188I TCNGA 7 cut(s) 202, 215, 576, 610, 624, 1163, 1973
Hpy188III TCNNGA 9 cut(s) 31, 248, 280, 298, 321, 745, 1424, 1595, 1952
Hpy8I GTNNAC 5 cut(s) 986, 1114, 1606, 1639, 1834
Hpy99I CGWCG 2 cut(s) 134, 610
HpyAV CCTTC 8 cut(s) 81, 232, 532, 700, 777, 958, 1088, 1158
HpyCH4III ACNGT 5 cut(s) 490, 1541, 1624, 1705, 1861
HpyF10VI GCNNNNNNNGC 2 cut(s) 1220, 2043
HpyF3I CTNAG 4 cut(s) 165, 657, 1107, 1206
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 1 cut(s) 1895
Kpn2I TCCGGA 1 cut(s) 320
Ksp22I TGATCA 2 cut(s) 342, 2050
Kzo9I GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
LmnI GCTCC 5 cut(s) 374, 462, 796, 1097, 1597
Lsp1109I GCAGC 3 cut(s) 889, 1744, 1858
LweI GCATC 3 cut(s) 1412, 1474, 1797
MaeI CTAG 4 cut(s) 1286, 1481, 1520, 1926
MaeIII GTNAC 2 cut(s) 1035, 1469
MalI GATC 6 cut(s) 302, 344, 480, 573, 1182, 2052
MbiI CCGCTC 1 cut(s) 172
MboI GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
MboII GAAGA 9 cut(s) 19, 115, 309, 705, 970, 990, 1412, 1861, 1976
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 1539, 1836
MlyI GAGTC 2 cut(s) 503, 634
MmeI TCCRAC 7 cut(s) 122, 193, 255, 588, 716, 1049, 1643
Mph1103I ATGCAT 1 cut(s) 12
MroI TCCGGA 1 cut(s) 320
MseI TTAA 7 cut(s) 456, 753, 1383, 1461, 1494, 1626, 1863
MslI CAYNNNNRTG 1 cut(s) 1455
MspI CCGG 3 cut(s) 321, 629, 1572
MunI CAATTG 1 cut(s) 308
Mva1269I GAATGC 2 cut(s) 10, 1935
MwoI GCNNNNNNNGC 2 cut(s) 1220, 2043
NdeII GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
NlaIV GGNNCC 3 cut(s) 35, 464, 1727
NmuCI GTSAC 1 cut(s) 1035
NsiI ATGCAT 1 cut(s) 12
PagI TCATGA 2 cut(s) 1423, 1951
PaqCI CACCTGC 1 cut(s) 188
PctI GAATGC 2 cut(s) 10, 1935
PfeI GAWTC 4 cut(s) 401, 775, 821, 1763
PkrI GCNGC 7 cut(s) 171, 287, 697, 904, 1236, 1759, 1873
PleI GAGTC 2 cut(s) 502, 633
PpsI GAGTC 2 cut(s) 502, 633
PshBI ATTAAT 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 35, 464, 1727
PspPI GGNCC 3 cut(s) 33, 640, 1726
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
RsaI GTAC 5 cut(s) 190, 563, 602, 1702, 2016
RsaNI GTAC 5 cut(s) 189, 562, 601, 1701, 2015
RseI CAYNNNNRTG 1 cut(s) 1455
SaqAI TTAA 7 cut(s) 456, 753, 1383, 1461, 1494, 1626, 1863
SatI GCNGC 7 cut(s) 170, 286, 696, 903, 1235, 1758, 1872
Sau3AI GATC 6 cut(s) 300, 342, 478, 571, 1180, 2050
Sau96I GGNCC 3 cut(s) 33, 640, 1726
SchI GAGTC 2 cut(s) 503, 634
SduI GDGCHC 2 cut(s) 1539, 1836
SfaNI GCATC 3 cut(s) 1412, 1474, 1797
SfcI CTRYAG 1 cut(s) 1639
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 1455
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SsiI CCGC 6 cut(s) 170, 286, 696, 975, 1043, 1234
SspMI CTAG 4 cut(s) 1286, 1481, 1520, 1926
StyI CCWWGG 1 cut(s) 1925
TaaI ACNGT 5 cut(s) 490, 1541, 1624, 1705, 1861
TaqI TCGA 4 cut(s) 299, 824, 831, 1939
TatI WGTACW 1 cut(s) 561
TauI GCSGC 4 cut(s) 172, 288, 698, 1237
TfiI GAWTC 4 cut(s) 401, 775, 821, 1763
Tru1I TTAA 7 cut(s) 456, 753, 1383, 1461, 1494, 1626, 1863
Tru9I TTAA 7 cut(s) 456, 753, 1383, 1461, 1494, 1626, 1863
TscAI CASTG 4 cut(s) 493, 1044, 1692, 1710
TseFI GTSAC 1 cut(s) 1035
TseI GCWGC 3 cut(s) 902, 1757, 1871
Tsp45I GTSAC 1 cut(s) 1035
TspDTI ATGAA 7 cut(s) 373, 799, 836, 1247, 1294, 1412, 1940
TspGWI ACGGA 1 cut(s) 907
TspRI CASTG 4 cut(s) 493, 1044, 1692, 1710
VneI GTGCAC 1 cut(s) 1832
VpaK11BI GGWCC 1 cut(s) 33
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 5 cut(s) 419, 1243, 1329, 1490, 1975
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmaJI CCTAGG 1 cut(s) 1925
XmiI GTMKAC 3 cut(s) 985, 1605, 1638
XspI CTAG 4 cut(s) 1286, 1481, 1520, 1926
Zsp2I ATGCAT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.