Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005001

Physical Location & Seq

Genomic Coordinates Reverse (-)

26140303 .. 26141226

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1201700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATTCATCTCGTCCATTTCTCTTCTGGGTCCTTTTCTTTTTCGTCTCCAACCTCAGTTTCCCTTCGCTTTCTGTCCCGTTCTTGCCTGCGACGAACAATAACCTCACCCTCTTAGGCGACGCTTCAATCACCAACAACTCCATTAGTCTCACTCAAGAACTCACCACATGCCCCTCCTCCCCTTCTGCTTCTTCTGGCGTTGGAAGAGCATTTTACGCCTACCCAATTCGGTTTCTTGACTCGAAAACCAACATAACTGCCTCTTTCTTGTGCCGATTCTCTTTTTCAATCACCCTAAGTTCCCGATTGTGTTCTTCTGGAGATGGCATTGCGTTTGTGATCACCCCCGATGTTGATTCTCTGGGGTCATACAGAGGGGGGTATATGGGACTTCCGGAGCCATCCTCGGTGTCGAAAGAATCGTTCTTCGCCGTGGAATTCGATACTAGGTTTGATCCTATGGTTGGTGATAAAAACGGTAACCACATAGGTATTGATTTGAACACAGTTGTGTCTGTTGCCACTGTTGGAGTTGTTTCTAGAGGGATTGATTTGACAAGTGGGAGGGAGATTACTGCTTGGATTGAGTACAGAGATGCTGTCAAGATGATTCGGGTTTGGGTCGCATACTCGTCAACTAGGCCTCCAACGCCTCTTCTTGTTGCTCAGATTGACCTCTCCAACGAGTTCAAGGAGTTCATGCGTGTCGGTTTCTCTGCCGCAAATGGACAGGGTGCTTCAATTCACAGGGTCACCAATTGGAGATTCAAGACTTTCAGGTCTCTTCCACCTGGGATTCCTGCGGATGCCTTTGAAAAAGGGGACTGCTTCATGTGCTCTCCACCAGAGGATTCAAGTACCAAAAGCAGCCCGGAAAATCATTCCCATGAAAGCAAGCAGCCCGGAAAATCATTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

308

Amino Acids

33.51

Weight (kDa)

6.52

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	30 - 259	6.1e-57	Legume lectin domain
Lectin_L-type_dom	PF18483	36 - 250	4.2e-06	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42120
fragaria_vesca	FvH4_4g18100 FvH4_4g18150 FvH4_4g18200 FvH4_5g32800 FvH4_5g32800
malus_domestica	MD08G1201700.v1.1 MD10G1019400.v1.1 MD10G1019500.v1.1 MD10G1019800.v1.1 MD10G1019900.v1.1 MD10G1020300.v1.1
prunus_persica	Prupe.8G022700_v2.0.a1
pyrus_communis	pycom10g01260
rosa_chinensis	RchiOBHm_Chr7g0230531
rosa_laevigata	RLG00000001488 RLG00000002646
rosa_multiflora	Rmu_co8495365.1_g000001 Rmu_sc0002799.1_g000003 Rmu_sc0005117.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230050
rosa_rugosa	Rorug07G0261300
rosa_samantha	Rh7AG410200 Rh7AG412400 Rh7AG412500 Rh7BG389900 Rh7CG430100 Rh7CG430200 Rh7DG408000
rosa_wichuraiana	Rw7G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	781
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	2 cut(s)	723, 806
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	2 cut(s)	593, 862
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	8 cut(s)	129, 291, 505, 694, 744, 772, 818, 858
AjnI	CCWGG	1 cut(s)	793
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 752, 784
AleI	CACNNNNGTG	1 cut(s)	512
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	3 cut(s)	52, 155, 789
AlwI	GGATC	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	2 cut(s)	870, 901
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	875, 906
AsuHPI	GGTGA	7 cut(s)	100, 124, 157, 286, 337, 482, 748
AvaII	GGWCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	882, 913
BccI	CCATC	2 cut(s)	320, 412
BceAI	ACGGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	795
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	875, 906
BcoDI	GTCTC	3 cut(s)	52, 155, 789
BfaI	CTAG	3 cut(s)	450, 543, 642
BisI	GCNGC	3 cut(s)	723, 871, 902
BlsI	GCNGC	3 cut(s)	724, 872, 903
Bme1390I	CCNGG	3 cut(s)	795, 875, 906
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	32, 402
BmrFI	CCNGG	3 cut(s)	795, 875, 906
BmsI	GCATC	2 cut(s)	589, 799
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	875, 906
BsaI	GGTCTC	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	408, 435, 794
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	408, 435, 794
BseGI	GGATG	2 cut(s)	404, 814
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	70, 683
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	882, 913
BshFI	GGCC	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	3 cut(s)	398, 875, 906
BslFI	GGGAC	3 cut(s)	62, 405, 839
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	3 cut(s)	52, 155, 789
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	3 cut(s)	62, 405, 839
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	646
Bso31I	GGTCTC	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	342, 457
BspACI	CCGC	2 cut(s)	723, 806
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	2 cut(s)	69, 682
BspEI	TCCGGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	32, 402
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	408, 435, 794
BssMI	GATC	2 cut(s)	342, 457
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	3 cut(s)	482, 511, 529
Bst6I	CTCTTC	4 cut(s)	29, 202, 663, 792
BstC8I	GCNNGC	2 cut(s)	90, 899
BstDEI	CTNAG	4 cut(s)	56, 115, 299, 669
BstDSI	CCRYGG	1 cut(s)	435
BstEII	GGTNACC	2 cut(s)	482, 754
BstF5I	GGATG	2 cut(s)	404, 814
BstKTI	GATC	2 cut(s)	345, 460
BstMAI	GTCTC	3 cut(s)	52, 155, 789
BstMBI	GATC	2 cut(s)	342, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 652, 837
BstNI	CCWGG	1 cut(s)	795
BstNSI	RCATGY	1 cut(s)	174
BstPI	GGTNACC	2 cut(s)	482, 754
BstSCI	CCNGG	3 cut(s)	793, 873, 904
BstV1I	GCAGC	2 cut(s)	882, 913
BsuRI	GGCC	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	404, 814
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	90, 899
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	592, 861
CviAII	CATG	5 cut(s)	171, 703, 835, 890, 921
CviJI	RGCY	4 cut(s)	403, 646, 873, 904
CviKI_1	RGCY	4 cut(s)	403, 646, 873, 904
CviQI	GTAC	2 cut(s)	592, 861
DdeI	CTNAG	4 cut(s)	56, 115, 299, 669
DpnI	GATC	2 cut(s)	344, 459
DpnII	GATC	2 cut(s)	342, 457
DrdI	GACNNNNNNGTC	1 cut(s)	781
DseDI	GACNNNNNNGTC	1 cut(s)	781
Eam1104I	CTCTTC	4 cut(s)	29, 202, 663, 792
EarI	CTCTTC	4 cut(s)	29, 202, 663, 792
Eco147I	AGGCCT	1 cut(s)	646
Eco31I	GGTCTC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	31
Eco91I	GGTNACC	2 cut(s)	482, 754
EcoO109I	RGGNCCY	1 cut(s)	31
EcoO65I	GGTNACC	2 cut(s)	482, 754
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	5 cut(s)	174, 706, 838, 893, 924
FaqI	GGGAC	3 cut(s)	62, 405, 839
FatI	CATG	5 cut(s)	170, 702, 834, 889, 920
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	723, 871, 902
FokI	GGATG	2 cut(s)	391, 821
Fsp4HI	GCNGC	3 cut(s)	723, 871, 902
FspBI	CTAG	3 cut(s)	450, 543, 642
GluI	GCNGC	3 cut(s)	723, 871, 902
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	3 cut(s)	398, 875, 906
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	174, 706, 838, 893, 924
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	8 cut(s)	242, 279, 359, 422, 613, 768, 799, 854
HpaII	CCGG	3 cut(s)	398, 875, 906
HphI	GGTGA	7 cut(s)	100, 124, 157, 286, 337, 482, 748
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	8 cut(s)	158, 239, 306, 321, 398, 543, 607, 772
Hpy8I	GTNNAC	1 cut(s)	639
Hpy99I	CGWCG	2 cut(s)	97, 125
HpyAV	CCTTC	2 cut(s)	75, 195
HpyCH4III	ACNGT	3 cut(s)	482, 511, 529
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 652, 837
HpyF3I	CTNAG	4 cut(s)	56, 115, 299, 669
Hsp92II	CATG	5 cut(s)	174, 706, 838, 893, 924
Kpn2I	TCCGGA	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	342, 457
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	882, 913
LweI	GCATC	2 cut(s)	589, 799
MaeI	CTAG	3 cut(s)	450, 543, 642
MaeIII	GTNAC	2 cut(s)	482, 754
MalI	GATC	2 cut(s)	344, 459
MboI	GATC	2 cut(s)	342, 457
MboII	GAAGA	7 cut(s)	16, 186, 219, 309, 421, 650, 779
MfeI	CAATTG	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	842
MluCI	AATT	4 cut(s)	228, 440, 744, 760
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	5 cut(s)	75, 184, 511, 674, 708
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	397
MslI	CAYNNNNRTG	3 cut(s)	512, 888, 919
MspI	CCGG	3 cut(s)	398, 875, 906
MspR9I	CCNGG	3 cut(s)	795, 875, 906
MunI	CAATTG	1 cut(s)	760
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	795
MwoI	GCNNNNNNNGC	3 cut(s)	218, 652, 837
NciI	CCSGG	2 cut(s)	875, 906
NdeII	GATC	2 cut(s)	342, 457
NlaIII	CATG	5 cut(s)	174, 706, 838, 893, 924
NlaIV	GGNNCC	2 cut(s)	32, 402
NmuCI	GTSAC	1 cut(s)	754
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	7 cut(s)	279, 359, 422, 613, 768, 799, 854
PkrI	GCNGC	3 cut(s)	724, 872, 903
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	793
PspEI	GGTNACC	2 cut(s)	482, 754
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	2 cut(s)	32, 402
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	593, 862
RsaNI	GTAC	2 cut(s)	592, 861
RseI	CAYNNNNRTG	3 cut(s)	512, 888, 919
SapI	GCTCTTC	1 cut(s)	202
SatI	GCNGC	3 cut(s)	723, 871, 902
Sau3AI	GATC	2 cut(s)	342, 457
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	795, 875, 906
SduI	GDGCHC	1 cut(s)	842
SetI	ASST	7 cut(s)	57, 108, 455, 496, 681, 785, 796
SfaNI	GCATC	2 cut(s)	589, 799
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	512, 888, 919
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	228, 440, 744, 760
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	2 cut(s)	723, 806
SspMI	CTAG	3 cut(s)	450, 543, 642
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	3 cut(s)	793, 873, 904
TaaI	ACNGT	3 cut(s)	482, 511, 529
TaqI	TCGA	3 cut(s)	245, 416, 444
TasI	AATT	4 cut(s)	228, 440, 744, 760
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	7 cut(s)	279, 359, 422, 613, 768, 799, 854
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	870, 901
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	3 cut(s)	691, 823, 906
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	440
XbaI	TCTAGA	1 cut(s)	542
XceI	RCATGY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XspI	CTAG	3 cut(s)	450, 543, 642
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.