Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Forward (+)

27595577 .. 27598102

Gene Structure 2526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26011.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAATCGCATTCCTCAACAATGCTAGCAGCAGTCCTCACTCTTCTGGTGTCACTGCCTGCAGTGAGCTTGGCCTCAGCTTCATGTAACTTCCCAGCTATATTCAACTTCGGCGACTCAAACTCCGACACCGGTGGCTTGTCTGCAGTCTTCGGCCAGGCCCGTTCACCTCACGGCGAGACCTTCTTTCACCACCCGGCTGGCCGTTACTGCGACGGCCGCCTCGTCATTGACTTCATAGCTAAGAGCCTTGGACTGCCATATCTTAGTGCATATCTTGACTCTGTGGGAAGCAACTTCACTCACGGAGCCAATTTCGCCACGGCCGGATCGACCATCCGGCCGCAGAACACGACTCTTCAGCAGAGTGGATTTAGTCCCATCTCCTTGAACGTTCAGTACAACGAGTTCTATGATTTTCTTCCTAGGTCCCAAGTTGCTCGTACTCAAGGTGGAGTTTTTGAACAACTTATGCCTAAAGCTGAGGCTTTCTCTCGTGGCTTGTACACCTTTGATATTGGCCAGAACGACTTAACAGCCGGGTTGTTCATGAACATGTCCGTTGCTCAAGTTAAAGGAATCGTTGTTCCTGATGTGCTTGATCAGTTCAAGAAAGTCGTCAAGTATGTACACAGTCAAGGAGGTAGAAACTTTTGGATACACAATACCGGTCCGGTGGGTTGTTTGCCGTATGTACTGGACCGCCTACCGGTCTTAGTCTCAGAGATGGACCGCCACGGTTGCGCCACTCCTTTCAATGAACTTGCTCAGTTTTTCAACCGTGGATTGAAGCACGCTGTGGTCCAGTTAAGGAAAGAGCTACCTTCGGCCGCAATCACTTATGTTGATGTCTACAAGGCCAAGTTCAACCTTATTAGCCAACCACAAAAGCATGGCAAGTCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0015928 GO:0016298 GO:0016787 GO:0016788 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

303

Amino Acids

32.95

Weight (kDa)

8.62

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 291	2e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	5 cut(s)	220, 344, 703, 733, 831
AclI	AACGTT	1 cut(s)	393
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	7 cut(s)	154, 202, 217, 324, 341, 520, 828
AcuI	CTGAAG	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	799
AfaI	GTAC	5 cut(s)	401, 445, 506, 630, 696
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	555
AgeI	ACCGGT	3 cut(s)	131, 668, 709
AgsI	TTSAA	8 cut(s)	106, 391, 464, 610, 757, 778, 790, 868
AjnI	CCWGG	1 cut(s)	156
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
AluBI	AGCT	6 cut(s)	69, 80, 98, 242, 482, 820
AluI	AGCT	6 cut(s)	69, 80, 98, 242, 482, 820
Alw26I	GTCTC	2 cut(s)	173, 724
AlwI	GGATC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	29
AsiGI	ACCGGT	3 cut(s)	131, 668, 709
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	6 cut(s)	160, 429, 671, 700, 730, 802
AsuC2I	CCSGG	2 cut(s)	197, 541
AsuHPI	GGTGA	2 cut(s)	159, 182
AsuNHI	GCTAGC	1 cut(s)	25
AvaII	GGWCC	5 cut(s)	429, 671, 700, 730, 802
AvrII	CCTAGG	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	522
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	142
BbvCI	CCTCAGC	2 cut(s)	76, 483
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	3 cut(s)	344, 389, 721
BceAI	ACGGC	5 cut(s)	189, 190, 232, 339, 673
BciT130I	CCWGG	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	197, 541
BcoDI	GTCTC	2 cut(s)	173, 724
BfaI	CTAG	2 cut(s)	26, 426
BfmI	CTRYAG	2 cut(s)	60, 144
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	30, 220, 344, 831
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	4 cut(s)	31, 221, 345, 832
Bme1390I	CCNGG	3 cut(s)	158, 197, 541
Bme18I	GGWCC	5 cut(s)	429, 671, 700, 730, 802
BmgT120I	GGNCC	6 cut(s)	160, 429, 671, 700, 730, 802
BmiI	GGNNCC	2 cut(s)	310, 431
BmrFI	CCNGG	3 cut(s)	158, 197, 541
BmtI	GCTAGC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
Bpu10I	CCTNAGC	2 cut(s)	76, 483
BpuEI	CTTGAG	2 cut(s)	432, 552
BpuMI	CCSGG	2 cut(s)	197, 541
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	5 cut(s)	250, 321, 425, 736, 781
BsaWI	WCCGGW	4 cut(s)	131, 668, 673, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	3 cut(s)	131, 668, 709
Bse1I	ACTGG	2 cut(s)	702, 805
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	5 cut(s)	250, 321, 425, 736, 781
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	4 cut(s)	90, 474, 735, 782
BseNI	ACTGG	2 cut(s)	702, 805
BseX3I	CGGCCG	4 cut(s)	217, 324, 341, 828
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	94
Bsh1285I	CGRYCG	4 cut(s)	220, 327, 344, 831
BshTI	ACCGGT	3 cut(s)	131, 668, 709
BsiEI	CGRYCG	4 cut(s)	220, 327, 344, 831
BsiSI	CCGG	8 cut(s)	132, 197, 327, 340, 540, 669, 674, 710
BslFI	GGGAC	2 cut(s)	363, 415
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	2 cut(s)	173, 724
BsmFI	GGGAC	2 cut(s)	363, 415
BsmI	GAATGC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	173
Bsp1407I	TGTACA	2 cut(s)	504, 628
Bsp143I	GATC	2 cut(s)	329, 601
BspACI	CCGC	5 cut(s)	220, 344, 703, 733, 831
BspCNI	CTCAG	4 cut(s)	89, 475, 734, 781
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	310, 431
BspMAI	CTGCAG	2 cut(s)	64, 148
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	173
BsrFI	RCCGGY	3 cut(s)	131, 668, 709
BsrGI	TGTACA	2 cut(s)	504, 628
BsrI	ACTGG	2 cut(s)	702, 805
BssAI	RCCGGY	3 cut(s)	131, 668, 709
BssECI	CCNNGG	5 cut(s)	250, 321, 425, 736, 781
BssMI	GATC	2 cut(s)	329, 601
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	250, 425
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	635, 740, 782
Bst6I	CTCTTC	2 cut(s)	48, 363
BstAUI	TGTACA	2 cut(s)	504, 628
BstC8I	GCNNGC	4 cut(s)	27, 60, 202, 795
BstDEI	CTNAG	7 cut(s)	76, 243, 266, 483, 715, 721, 768
BstDSI	CCRYGG	3 cut(s)	321, 736, 781
BstF5I	GGATG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	2 cut(s)	332, 604
BstMAI	GTCTC	2 cut(s)	173, 724
BstMBI	GATC	2 cut(s)	329, 601
BstMCI	CGRYCG	4 cut(s)	220, 327, 344, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 219, 317, 741
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	156, 195, 539
BstSFI	CTRYAG	2 cut(s)	60, 144
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstZI	CGGCCG	4 cut(s)	217, 324, 341, 828
BsuI	GTATCC	1 cut(s)	651
BtgI	CCRYGG	3 cut(s)	321, 736, 781
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	2 cut(s)	53, 69
BtsIMutI	CAGTG	2 cut(s)	53, 69
Cac8I	GCNNGC	4 cut(s)	27, 60, 202, 795
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	746
Cfr10I	RCCGGY	3 cut(s)	131, 668, 709
Cfr13I	GGNCC	6 cut(s)	160, 429, 671, 700, 730, 802
CpoI	CGGWCCG	1 cut(s)	671
Csp6I	GTAC	5 cut(s)	400, 444, 505, 629, 695
CspAI	ACCGGT	3 cut(s)	131, 668, 709
CspI	CGGWCCG	1 cut(s)	671
CviAII	CATG	4 cut(s)	84, 550, 556, 893
CviQI	GTAC	5 cut(s)	400, 444, 505, 629, 695
DdeI	CTNAG	7 cut(s)	76, 243, 266, 483, 715, 721, 768
DpnI	GATC	2 cut(s)	331, 603
DpnII	GATC	2 cut(s)	329, 601
DraIII	CACNNNGTG	1 cut(s)	799
EaeI	YGGCCR	7 cut(s)	154, 202, 217, 324, 341, 520, 828
EagI	CGGCCG	4 cut(s)	217, 324, 341, 828
Eam1104I	CTCTTC	2 cut(s)	48, 363
EarI	CTCTTC	2 cut(s)	48, 363
EclXI	CGGCCG	4 cut(s)	217, 324, 341, 828
Eco130I	CCWWGG	2 cut(s)	250, 425
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	5 cut(s)	429, 671, 700, 730, 802
Eco52I	CGGCCG	4 cut(s)	217, 324, 341, 828
Eco57I	CTGAAG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	250, 425
ErhI	CCWWGG	2 cut(s)	250, 425
FaeI	CATG	4 cut(s)	87, 553, 559, 896
FaqI	GGGAC	2 cut(s)	363, 415
FatI	CATG	4 cut(s)	83, 549, 555, 892
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	30, 220, 344, 831
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	4 cut(s)	30, 220, 344, 831
FspBI	CTAG	2 cut(s)	26, 426
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	4 cut(s)	30, 220, 344, 831
GsaI	CCCAGC	1 cut(s)	98
HapII	CCGG	8 cut(s)	132, 197, 327, 340, 540, 669, 674, 710
HhaI	GCGC	1 cut(s)	746
Hin1II	CATG	4 cut(s)	87, 553, 559, 896
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HinfI	GANTC	5 cut(s)	5, 116, 281, 355, 579
HpaII	CCGG	8 cut(s)	132, 197, 327, 340, 540, 669, 674, 710
HphI	GGTGA	2 cut(s)	159, 182
Hpy166II	GTNNAC	4 cut(s)	167, 507, 631, 853
Hpy188I	TCNGA	2 cut(s)	127, 724
Hpy188III	TCNNGA	4 cut(s)	278, 550, 590, 610
Hpy8I	GTNNAC	4 cut(s)	167, 507, 631, 853
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	193, 834
HpyCH4III	ACNGT	3 cut(s)	635, 740, 782
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	62, 146, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 219, 317, 741
HpyF3I	CTNAG	7 cut(s)	76, 243, 266, 483, 715, 721, 768
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	87, 553, 559, 896
HspAI	GCGC	1 cut(s)	744
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	329, 601
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	26, 426
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	3 cut(s)	51, 86, 206
MalI	GATC	2 cut(s)	331, 603
MboI	GATC	2 cut(s)	329, 601
MboII	GAAGA	4 cut(s)	35, 142, 350, 413
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	3 cut(s)	110, 275, 349
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	7 cut(s)	25, 47, 85, 180, 233, 478, 635
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	3 cut(s)	533, 573, 809
MslI	CAYNNNNRTG	1 cut(s)	554
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	8 cut(s)	132, 197, 327, 340, 540, 669, 674, 710
MspR9I	CCNGG	3 cut(s)	158, 197, 541
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	4 cut(s)	210, 219, 317, 741
NciI	CCSGG	2 cut(s)	197, 541
NdeII	GATC	2 cut(s)	329, 601
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	87, 553, 559, 896
NlaIV	GGNNCC	2 cut(s)	310, 431
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	559
PagI	TCATGA	1 cut(s)	549
PciI	ACATGT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 329
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	5, 579
PinAI	ACCGGT	3 cut(s)	131, 668, 709
PkrI	GCNGC	4 cut(s)	31, 221, 345, 832
PleI	GAGTC	3 cut(s)	110, 275, 349
PpsI	GAGTC	3 cut(s)	110, 275, 349
PpuMI	RGGWCCY	1 cut(s)	429
PscI	ACATGT	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	310, 431
PspPI	GGNCC	6 cut(s)	160, 429, 671, 700, 730, 802
PspPPI	RGGWCCY	1 cut(s)	429
PsrI	GAACNNNNNNTAC	4 cut(s)	383, 392, 415, 424
PstI	CTGCAG	2 cut(s)	64, 148
RsaI	GTAC	5 cut(s)	401, 445, 506, 630, 696
RsaNI	GTAC	5 cut(s)	400, 444, 505, 629, 695
RseI	CAYNNNNRTG	1 cut(s)	554
Rsr2I	CGGWCCG	1 cut(s)	671
RsrII	CGGWCCG	1 cut(s)	671
SaqAI	TTAA	3 cut(s)	533, 573, 809
SatI	GCNGC	4 cut(s)	30, 220, 344, 831
Sau3AI	GATC	2 cut(s)	329, 601
Sau96I	GGNCC	6 cut(s)	160, 429, 671, 700, 730, 802
SchI	GAGTC	3 cut(s)	110, 275, 349
ScrFI	CCNGG	3 cut(s)	158, 197, 541
SfcI	CTRYAG	2 cut(s)	60, 144
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	5 cut(s)	429, 671, 700, 730, 802
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	447, 567
SmoI	CTYRAG	2 cut(s)	447, 567
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	5 cut(s)	220, 344, 703, 733, 831
SspMI	CTAG	2 cut(s)	26, 426
StyD4I	CCNGG	3 cut(s)	156, 195, 539
StyI	CCWWGG	2 cut(s)	250, 425
TaaI	ACNGT	3 cut(s)	635, 740, 782
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	332, 902
TasI	AATT	1 cut(s)	313
TatI	WGTACW	4 cut(s)	399, 504, 628, 694
TauI	GCSGC	3 cut(s)	222, 346, 833
TfiI	GAWTC	2 cut(s)	5, 579
Tru1I	TTAA	3 cut(s)	533, 573, 809
Tru9I	TTAA	3 cut(s)	533, 573, 809
TscAI	CASTG	2 cut(s)	60, 69
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	72, 226, 538, 566, 774
TspGWI	ACGGA	2 cut(s)	321, 550
TspRI	CASTG	2 cut(s)	60, 69
VpaK11BI	GGWCC	5 cut(s)	429, 671, 700, 730, 802
XceI	RCATGY	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	2 cut(s)	26, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.