Rroxscaffold_5G00374990

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
55891759 .. 55893948
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374990.1

Sequence Viewer

Length: 1200 bp
ATGGAATCACATTCCTCAACAATACTAGTAATTCTCACTCTTCTGGTGGAACTGTCTGCAGTGAGCTTGGCCTCAACTAATTCATGTAACTTCCCAGCCATATTCAACTTCGGCGACTCAAACTCCGACACCGGTGGCTTGTCTGCAGTCTTCGGCCAGGCACGTTCACCTCACGGCGAGTCCTTCTTCCACGGCCCGGCTGGCCGGTACTGTGACGGCCGCCTCCTCATTGATTTTATAGCTAAAAGCCTTGGACTACCATATCTTAGCGCATATCTCGACTCGGTGGGAAGCAACTTCACTCACGGAGCCAACTTCGCGACGGCCGGATCGACCATCCGGCCTCAGAACACAACTATTCAACAGAGTGGGTTTAGTCCCATCTCCTTAAACGTTCAGTACAACGAGTTCTATGATTTTCTTCCTAGGTCCCAAGTTGCTCGGAATCGAGGTGGAGTTTTTGCACAACTAATGCCTAAAGCTGAGGATTTCTCTCGTGCCTTGTACACCTTCGATATTGGTCAGAACGACTTGACAGCCGGTTTGTTCTTGAACATGTCCGTCGCCCAAGTTAAAGCATTTGTTCCTGATGTACTCGATAAGTTCAAAGACGTCGTCAAGTATGTACACAGTCAAGGAGGTAGATTTTTCTGGATACACAACACGGGACCGGTCGGTTGTCTACCATATGTATTGGACCGCCTACCGGTCTTAGCCTCGGAGGTGGACCGCCACGGGTGCGCCAGACCTTTCAATGAACTTGCTCAGTTTTTCAACCGTGGATTAAAGCACGCTGTGGTCCAGTTAAGGAAAGAGCTACCTTCGGCTGCAATCACATATGTTGACGTTTACAAGGCCAAGTTCAACCTCATTAGCCAACCACAAAAGCATGGCAAGTCCTTAACCCTAGACTTTCCATTTGCGGATGGATTAGCTAGAGTTAAAGAACCGATAAGAGCATGTTGCGGCCATGGTGGGAAGTACAATTTCAATCCTCACCTTGGATGTGGAGGAAAGATCAAGGTTCATGGCAAAGAAATATTAGTGGGAAAGTCATGTAAAGACCCTTCGGTTTGGGTAAATTGGGATGGGGTACATTACACTCAAGCAGCTAACAAAAAGATCTTCGATCAGATTGTAGATGGTTCATTTTCGAACCCTCCAGTTCCTTTGAAAATGGCTTGCCATAAGCACAACTAA

Protein Analysis

399

Amino Acids

43.74

Weight (kDa)

8.94

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 34 - 379 1.4e-43 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 615
AccI GTMKAC 1 cut(s) 682
AccII CGCG 1 cut(s) 320
AciI CCGC 5 cut(s) 220, 700, 730, 923, 966
AclI AACGTT 1 cut(s) 393
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 5 cut(s) 154, 202, 217, 324, 967
AcyI GRCGYC 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 796
AfaI GTAC 7 cut(s) 209, 401, 506, 594, 627, 983, 1095
AfiI CCNNNNNNNGG 3 cut(s) 196, 706, 1001
AflIII ACRYGT 1 cut(s) 555
AgeI ACCGGT 3 cut(s) 131, 670, 706
AgsI TTSAA 9 cut(s) 106, 362, 553, 607, 754, 775, 865, 991, 1174
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 6 cut(s) 66, 242, 482, 817, 935, 1112
AluI AGCT 6 cut(s) 66, 242, 482, 817, 935, 1112
AlwI GGATC 1 cut(s) 337
AoxI GGCC 9 cut(s) 69, 154, 193, 202, 217, 324, 341, 855, 967
ApeKI GCWGC 2 cut(s) 827, 1109
ArsI GACNNNNNNTTYG 6 cut(s) 526, 558, 600, 632, 902, 934
AsiGI ACCGGT 3 cut(s) 131, 670, 706
AspA2I CCTAGG 1 cut(s) 425
AspLEI GCGC 2 cut(s) 272, 743
AspS9I GGNCC 6 cut(s) 194, 429, 668, 697, 727, 799
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 159, 989
AsuII TTCGAA 1 cut(s) 1154
AvaII GGWCC 5 cut(s) 429, 668, 697, 727, 799
AvrII CCTAGG 1 cut(s) 425
BarI GAAGNNNNNNTAC 2 cut(s) 1051, 1083
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 814, 1121
BccI CCATC 5 cut(s) 344, 389, 920, 1082, 1136
BceAI ACGGC 4 cut(s) 190, 208, 232, 339
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 648
BcnI CCSGG 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 4 cut(s) 26, 426, 908, 936
BfmI CTRYAG 2 cut(s) 57, 144
BfuI GTATCC 1 cut(s) 648
BglI GCCNNNNNGGC 1 cut(s) 201
BglII AGATCT 1 cut(s) 1122
BisI GCNGC 4 cut(s) 220, 828, 967, 1110
BlnI CCTAGG 1 cut(s) 425
BlsI GCNGC 4 cut(s) 221, 829, 968, 1111
Bme1390I CCNGG 2 cut(s) 158, 197
Bme18I GGWCC 5 cut(s) 429, 668, 697, 727, 799
BmgT120I GGNCC 6 cut(s) 194, 429, 668, 697, 727, 799
BmiI GGNNCC 3 cut(s) 310, 431, 669
BmrFI CCNGG 2 cut(s) 158, 197
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpmI CTGGAG 1 cut(s) 1146
Bpu10I CCTNAGC 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 1154
BpuEI CTTGAG 1 cut(s) 1089
BpuMI CCSGG 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 612
BsaJI CCNNGG 8 cut(s) 190, 250, 425, 717, 733, 778, 970, 1000
BsaWI WCCGGW 3 cut(s) 131, 670, 706
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 706, 1001
Bse118I RCCGGY 5 cut(s) 131, 204, 539, 670, 706
Bse1I ACTGG 2 cut(s) 802, 1163
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 8 cut(s) 190, 250, 425, 717, 733, 778, 970, 1000
BseGI GGATG 4 cut(s) 336, 931, 1010, 1093
BseLI CCNNNNNNNGG 3 cut(s) 196, 706, 1001
BseMII CTCAG 3 cut(s) 359, 474, 779
BseNI ACTGG 2 cut(s) 802, 1163
BseRI GAGGAG 1 cut(s) 215
BseX3I CGGCCG 2 cut(s) 217, 324
BseXI GCAGC 2 cut(s) 814, 1121
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 3 cut(s) 220, 327, 675
BshFI GGCC 9 cut(s) 71, 156, 195, 204, 219, 326, 343, 857, 969
BshTI ACCGGT 3 cut(s) 131, 670, 706
BsiEI CGRYCG 3 cut(s) 220, 327, 675
BsiSI CCGG 8 cut(s) 132, 197, 205, 327, 340, 540, 671, 707
BslFI GGGAC 3 cut(s) 363, 415, 681
BslI CCNNNNNNNGG 3 cut(s) 196, 706, 1001
BsmFI GGGAC 3 cut(s) 363, 415, 681
BsnI GGCC 9 cut(s) 71, 156, 195, 204, 219, 326, 343, 857, 969
Bsp119I TTCGAA 1 cut(s) 1154
Bsp1407I TGTACA 2 cut(s) 504, 625
Bsp143I GATC 4 cut(s) 329, 1017, 1122, 1129
Bsp19I CCATGG 1 cut(s) 970
Bsp68I TCGCGA 1 cut(s) 320
BspACI CCGC 5 cut(s) 220, 700, 730, 923, 966
BspANI GGCC 9 cut(s) 71, 156, 195, 204, 219, 326, 343, 857, 969
BspCNI CTCAG 3 cut(s) 358, 475, 778
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 3 cut(s) 310, 431, 669
BspMAI CTGCAG 2 cut(s) 61, 148
BspPI GGATC 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 1154
BsrFI RCCGGY 5 cut(s) 131, 204, 539, 670, 706
BsrGI TGTACA 2 cut(s) 504, 625
BsrI ACTGG 2 cut(s) 802, 1163
BssAI RCCGGY 5 cut(s) 131, 204, 539, 670, 706
BssECI CCNNGG 8 cut(s) 190, 250, 425, 717, 733, 778, 970, 1000
BssMI GATC 4 cut(s) 329, 1017, 1122, 1129
BssNI GRCGYC 1 cut(s) 612
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 4 cut(s) 250, 425, 970, 1000
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 4 cut(s) 54, 212, 632, 779
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 612
BstAUI TGTACA 2 cut(s) 504, 625
BstBI TTCGAA 1 cut(s) 1154
BstC8I GCNNGC 3 cut(s) 202, 792, 1183
BstDEI CTNAG 5 cut(s) 266, 345, 483, 712, 765
BstDSI CCRYGG 4 cut(s) 190, 733, 778, 970
BstF5I GGATG 4 cut(s) 336, 931, 1010, 1093
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 2 cut(s) 272, 743
BstKTI GATC 4 cut(s) 332, 1020, 1125, 1132
BstMBI GATC 4 cut(s) 329, 1017, 1122, 1129
BstMCI CGRYCG 3 cut(s) 220, 327, 675
BstMWI GCNNNNNNNGC 3 cut(s) 201, 317, 738
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 559, 963
BstSCI CCNGG 2 cut(s) 156, 195
BstSFI CTRYAG 2 cut(s) 57, 144
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 814, 1121
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 1122
BstYI RGATCY 1 cut(s) 1122
BstZI CGGCCG 2 cut(s) 217, 324
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 9 cut(s) 71, 156, 195, 204, 219, 326, 343, 857, 969
BtgI CCRYGG 4 cut(s) 190, 733, 778, 970
BtsCI GGATG 4 cut(s) 336, 931, 1010, 1093
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
BtuMI TCGCGA 1 cut(s) 320
Cac8I GCNNGC 3 cut(s) 202, 792, 1183
CfoI GCGC 2 cut(s) 272, 743
Cfr10I RCCGGY 5 cut(s) 131, 204, 539, 670, 706
Cfr13I GGNCC 6 cut(s) 194, 429, 668, 697, 727, 799
Csp6I GTAC 7 cut(s) 208, 400, 505, 593, 626, 982, 1094
CspAI ACCGGT 3 cut(s) 131, 670, 706
CviAII CATG 7 cut(s) 84, 556, 890, 960, 971, 1028, 1056
CviQI GTAC 7 cut(s) 208, 400, 505, 593, 626, 982, 1094
DdeI CTNAG 5 cut(s) 266, 345, 483, 712, 765
DpnI GATC 4 cut(s) 331, 1019, 1124, 1131
DpnII GATC 4 cut(s) 329, 1017, 1122, 1129
DraIII CACNNNGTG 1 cut(s) 796
EaeI YGGCCR 5 cut(s) 154, 202, 217, 324, 967
EagI CGGCCG 2 cut(s) 217, 324
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EclXI CGGCCG 2 cut(s) 217, 324
Eco130I CCWWGG 4 cut(s) 250, 425, 970, 1000
Eco47I GGWCC 5 cut(s) 429, 668, 697, 727, 799
Eco52I CGGCCG 2 cut(s) 217, 324
EcoO109I RGGNCCY 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 4 cut(s) 250, 425, 970, 1000
ErhI CCWWGG 4 cut(s) 250, 425, 970, 1000
FaeI CATG 7 cut(s) 87, 559, 893, 963, 974, 1031, 1059
FaqI GGGAC 3 cut(s) 363, 415, 681
FatI CATG 7 cut(s) 83, 555, 889, 959, 970, 1027, 1055
FauNDI CATATG 2 cut(s) 688, 838
FblI GTMKAC 1 cut(s) 682
Fnu4HI GCNGC 4 cut(s) 220, 828, 967, 1110
FokI GGATG 4 cut(s) 323, 938, 1017, 1100
Fsp4HI GCNGC 4 cut(s) 220, 828, 967, 1110
FspBI CTAG 4 cut(s) 26, 426, 908, 936
GlaI GCGC 2 cut(s) 271, 742
GluI GCNGC 4 cut(s) 220, 828, 967, 1110
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 9 cut(s) 71, 156, 195, 204, 219, 326, 343, 857, 969
HapII CCGG 8 cut(s) 132, 197, 205, 327, 340, 540, 671, 707
HhaI GCGC 2 cut(s) 272, 743
Hin1I GRCGYC 1 cut(s) 612
Hin1II CATG 7 cut(s) 87, 559, 893, 963, 974, 1031, 1059
Hin6I GCGC 2 cut(s) 270, 741
HinP1I GCGC 2 cut(s) 270, 741
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HinfI GANTC 5 cut(s) 5, 116, 179, 281, 445
HpaII CCGG 8 cut(s) 132, 197, 205, 327, 340, 540, 671, 707
HphI GGTGA 2 cut(s) 159, 989
Hpy166II GTNNAC 7 cut(s) 167, 507, 628, 683, 727, 844, 850
Hpy188I TCNGA 6 cut(s) 127, 348, 444, 525, 721, 1134
Hpy188III TCNNGA 5 cut(s) 278, 319, 550, 587, 652
Hpy8I GTNNAC 7 cut(s) 167, 507, 628, 683, 727, 844, 850
Hpy99I CGWCG 3 cut(s) 325, 566, 617
HpyAV CCTTC 4 cut(s) 193, 520, 831, 1077
HpyCH4III ACNGT 4 cut(s) 54, 212, 632, 779
HpyCH4IV ACGT 4 cut(s) 163, 393, 612, 846
HpyCH4V TGCA 4 cut(s) 59, 146, 464, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 317, 738
HpyF3I CTNAG 5 cut(s) 266, 345, 483, 712, 765
HpySE526I ACGT 4 cut(s) 163, 393, 612, 846
Hsp92I GRCGYC 1 cut(s) 612
Hsp92II CATG 7 cut(s) 87, 559, 893, 963, 974, 1031, 1059
HspAI GCGC 2 cut(s) 270, 741
Kzo9I GATC 4 cut(s) 329, 1017, 1122, 1129
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 2 cut(s) 814, 1121
MaeI CTAG 4 cut(s) 26, 426, 908, 936
MaeII ACGT 4 cut(s) 163, 393, 612, 846
MaeIII GTNAC 2 cut(s) 86, 212
MalI GATC 4 cut(s) 331, 1019, 1124, 1131
MboI GATC 4 cut(s) 329, 1017, 1122, 1129
MboII GAAGA 5 cut(s) 32, 142, 178, 413, 1117
MflI RGATCY 1 cut(s) 1122
MluCI AATT 4 cut(s) 30, 79, 985, 1081
MlyI GAGTC 3 cut(s) 110, 188, 275
MmeI TCCRAC 1 cut(s) 150
MseI TTAA 6 cut(s) 389, 573, 785, 806, 902, 942
MspI CCGG 8 cut(s) 132, 197, 205, 327, 340, 540, 671, 707
MspR9I CCNGG 2 cut(s) 158, 197
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 3 cut(s) 201, 317, 738
NciI CCSGG 1 cut(s) 197
NcoI CCATGG 1 cut(s) 970
NdeI CATATG 2 cut(s) 688, 838
NdeII GATC 4 cut(s) 329, 1017, 1122, 1129
NlaIII CATG 7 cut(s) 87, 559, 893, 963, 974, 1031, 1059
NlaIV GGNNCC 3 cut(s) 310, 431, 669
NmuCI GTSAC 1 cut(s) 212
NruI TCGCGA 1 cut(s) 320
NspI RCATGY 2 cut(s) 559, 963
NspV TTCGAA 1 cut(s) 1154
PciI ACATGT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PfeI GAWTC 2 cut(s) 5, 445
PflFI GACNNNGTC 1 cut(s) 614
PinAI ACCGGT 3 cut(s) 131, 670, 706
PkrI GCNGC 4 cut(s) 221, 829, 968, 1111
PleI GAGTC 3 cut(s) 110, 187, 275
PpsI GAGTC 3 cut(s) 110, 187, 275
PpuMI RGGWCCY 1 cut(s) 429
PscI ACATGT 1 cut(s) 555
Psp1406I AACGTT 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 3 cut(s) 310, 431, 669
PspPI GGNCC 6 cut(s) 194, 429, 668, 697, 727, 799
PspPPI RGGWCCY 1 cut(s) 429
PsrI GAACNNNNNNTAC 2 cut(s) 392, 424
PstI CTGCAG 2 cut(s) 61, 148
PsuI RGATCY 1 cut(s) 1122
PsyI GACNNNGTC 1 cut(s) 614
RruI TCGCGA 1 cut(s) 320
RsaI GTAC 7 cut(s) 209, 401, 506, 594, 627, 983, 1095
RsaNI GTAC 7 cut(s) 208, 400, 505, 593, 626, 982, 1094
SaqAI TTAA 6 cut(s) 389, 573, 785, 806, 902, 942
SatI GCNGC 4 cut(s) 220, 828, 967, 1110
Sau3AI GATC 4 cut(s) 329, 1017, 1122, 1129
Sau96I GGNCC 6 cut(s) 194, 429, 668, 697, 727, 799
SchI GAGTC 3 cut(s) 110, 188, 275
ScrFI CCNGG 2 cut(s) 158, 197
SfcI CTRYAG 2 cut(s) 57, 144
SfiI GGCCNNNNNGGCC 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 1154
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 5 cut(s) 429, 668, 697, 727, 799
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 4 cut(s) 30, 79, 985, 1081
SsiI CCGC 5 cut(s) 220, 700, 730, 923, 966
SspI AATATT 1 cut(s) 1041
SspMI CTAG 4 cut(s) 26, 426, 908, 936
StyD4I CCNGG 2 cut(s) 156, 195
StyI CCWWGG 4 cut(s) 250, 425, 970, 1000
TaaI ACNGT 4 cut(s) 54, 212, 632, 779
TaiI ACGT 4 cut(s) 166, 396, 615, 849
TaqI TCGA 7 cut(s) 279, 332, 448, 513, 597, 1128, 1154
TasI AATT 4 cut(s) 30, 79, 985, 1081
TatI WGTACW 5 cut(s) 399, 504, 592, 625, 981
TauI GCSGC 2 cut(s) 222, 969
TfiI GAWTC 2 cut(s) 5, 445
Tru1I TTAA 6 cut(s) 389, 573, 785, 806, 902, 942
Tru9I TTAA 6 cut(s) 389, 573, 785, 806, 902, 942
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 827, 1109
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 72, 771, 1016, 1137
TspGWI ACGGA 2 cut(s) 321, 550
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 614
VpaK11BI GGWCC 5 cut(s) 429, 668, 697, 727, 799
XceI RCATGY 2 cut(s) 559, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmaJI CCTAGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 682
XspI CTAG 4 cut(s) 26, 426, 908, 936
ZraI GACGTC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.