Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Reverse (-)

36072057 .. 36075490

Gene Structure 3434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1248900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTAATGTTTCTATCAGTGAGCTTGGCAGCCTCATCGTCTCCATGCAAATTTCCAGCCATATTCAACTTCGGCGACTCAAACTCCGACACAGGCGGCTTGTCTGCGCTCTTCGGCCAGGCGCGTTTGCCCCACGGAGAGTCCTACTTCCATAGCCCCGCCGGCCGTTACTGCGATGGCCGTCTTGTCATTGATTTTATAGCCAACAGCCTTGAATTACCGTTTCTGAGCGCATATCTTGATTCTGTGGGAAGCAACTTCACTCACGGAGCTAACTTTGCCACGGCGGGCTCAACCATCAGGCCGCAGAACACAACCATTCGCCAGAGCGGGTTTAGTCCTGTATCCTTGGACGTTCAGTACAATGAGTTTTACGATTTTCAACCAAGATCCCAAACCACTCGTAGTCGAGGTGGAGTTTTTGAACAGCTAATGCCTAAAGCAGAAGATTTCTCTCGTGCTTTATACGCATTTGATATTGGCCAGAATGATTTAACATCCGGTTTGTTCTTGAACATGTCCATTACCCAAGTCAAGGCATATGTTCCTGATGTGCTAAACCAGTTTAACAGCATTGTTAAGTATGTATACAATCAAGGAGGTAGATACTTTTGGATACACAATACAGGTCCCATTGGTTGTCTTCCCTACGTATTGGACCGCTTACCAATCCCAGCCGCGCAGGTTGACAAGGCCGGATGCGCCACGCCTTACAATAAACTTGCTCGGTTTTTCAACCGGGGATTGAAACAAGCTGTGGTTCAGTTAAGAAAAGAACTACCATTGGCTGCAATCACTTATGTTGATGTTTATTCAGCCAAGTACTCCCTCATTAGCCAACCACAAAAGCATGGATTCAAGCAACCGATAAGAGCATGTTGTGGTCATGGTGGGAAGTACAACTTCAACAAGCACATTGGATGTGGAGGAAAGATTAGGGTTCATGGAAAAGATGTGTTAGTGGGAAAGGCATGCCAAGACCCATCACTTTGGGTGAATTGGGATGGTGTGCATTTCACTGAGGCGGCTAACAAGAGAGTCTTCGATCAGATTGTAGATGGTTCACTCTCAGACCCACCAACTCCATTGAAATTTGCTTGCCATGGAAAGCAGCAGCAAACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0015928 GO:0016298 GO:0016787 GO:0016788 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

376

Amino Acids

41.38

Weight (kDa)

9.03

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	21 - 351	1.3e-43	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	673
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	2 cut(s)	124, 680
AciI	CCGC	8 cut(s)	96, 159, 287, 305, 330, 661, 678, 1025
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	4 cut(s)	115, 163, 178, 481
AcsI	RAATTY	2 cut(s)	50, 1091
AfaI	GTAC	3 cut(s)	362, 824, 899
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflIII	ACRYGT	1 cut(s)	516
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	24, 272, 430, 755
AluI	AGCT	4 cut(s)	24, 272, 430, 755
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	6 cut(s)	115, 163, 178, 302, 481, 693
ApeKI	GCWGC	4 cut(s)	29, 788, 1111, 1114
ApoI	RAATTY	2 cut(s)	50, 1091
AspLEI	GCGC	5 cut(s)	109, 124, 233, 682, 704
AspS9I	GGNCC	2 cut(s)	629, 658
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	1 cut(s)	1006
AvaII	GGWCC	2 cut(s)	629, 658
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	635, 1033
BbvI	GCAGC	3 cut(s)	41, 775, 1123
BccI	CCATC	5 cut(s)	170, 305, 991, 998, 1052
BceAI	ACGGC	3 cut(s)	150, 165, 300
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	2 cut(s)	355, 609
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	673
BfuI	GTATCC	2 cut(s)	355, 609
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	8 cut(s)	30, 97, 305, 678, 789, 1026, 1112, 1115
BlsI	GCNGC	8 cut(s)	31, 98, 306, 679, 790, 1027, 1113, 1116
BmcAI	AGTACT	1 cut(s)	824
Bme1390I	CCNGG	2 cut(s)	119, 740
Bme18I	GGWCC	2 cut(s)	629, 658
BmgT120I	GGNCC	2 cut(s)	629, 658
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	119, 740
BmsI	GCATC	1 cut(s)	689
BpiI	GAAGAC	2 cut(s)	635, 1033
BpuMI	CCSGG	1 cut(s)	740
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	5 cut(s)	133, 282, 348, 739, 1102
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	5 cut(s)	133, 282, 348, 739, 1102
BseGI	GGATG	4 cut(s)	497, 704, 926, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	218, 1011, 1083
BseNI	ACTGG	1 cut(s)	562
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	41, 775, 1123
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	2 cut(s)	124, 680
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	6 cut(s)	117, 165, 180, 304, 483, 695
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	162, 501, 696, 739
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	6 cut(s)	117, 165, 180, 304, 483, 695
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	389, 1045
Bsp19I	CCATGG	1 cut(s)	1102
BspACI	CCGC	8 cut(s)	96, 159, 287, 305, 330, 661, 678, 1025
BspANI	GGCC	6 cut(s)	117, 165, 180, 304, 483, 695
BspCNI	CTCAG	3 cut(s)	219, 1012, 1082
BspFNI	CGCG	2 cut(s)	124, 680
BspLI	GGNNCC	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	1 cut(s)	384
BspQI	GCTCTTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	5 cut(s)	133, 282, 348, 739, 1102
BssMI	GATC	2 cut(s)	389, 1045
BssNAI	GTATAC	1 cut(s)	589
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	348, 1102
Bst1107I	GTATAC	1 cut(s)	589
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	4 cut(s)	163, 289, 973, 1099
BstDEI	CTNAG	3 cut(s)	227, 1020, 1069
BstDSI	CCRYGG	3 cut(s)	133, 282, 1102
BstF5I	GGATG	4 cut(s)	497, 704, 926, 1009
BstFNI	CGCG	2 cut(s)	124, 680
BstHHI	GCGC	5 cut(s)	109, 124, 233, 682, 704
BstKTI	GATC	2 cut(s)	392, 1048
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	389, 1045
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	5 cut(s)	162, 171, 278, 467, 701
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	3 cut(s)	520, 879, 975
BstSCI	CCNGG	2 cut(s)	117, 738
BstSNI	TACGTA	1 cut(s)	652
BstUI	CGCG	2 cut(s)	124, 680
BstV1I	GCAGC	3 cut(s)	41, 775, 1123
BstV2I	GAAGAC	2 cut(s)	635, 1033
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	990
BstYI	RGATCY	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	589
BstZI	CGGCCG	1 cut(s)	163
BsuI	GTATCC	2 cut(s)	355, 609
BsuRI	GGCC	6 cut(s)	117, 165, 180, 304, 483, 695
BtgI	CCRYGG	3 cut(s)	133, 282, 1102
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	497, 704, 926, 1009
BtsIMutI	CAGTG	2 cut(s)	24, 1017
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	4 cut(s)	163, 289, 973, 1099
CfoI	GCGC	5 cut(s)	109, 124, 233, 682, 704
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	629, 658
Csp6I	GTAC	3 cut(s)	361, 823, 898
CviAII	CATG	8 cut(s)	45, 517, 851, 876, 887, 944, 972, 1103
CviQI	GTAC	3 cut(s)	361, 823, 898
DdeI	CTNAG	3 cut(s)	227, 1020, 1069
DpnI	GATC	2 cut(s)	391, 1047
DpnII	GATC	2 cut(s)	389, 1045
EaeI	YGGCCR	4 cut(s)	115, 163, 178, 481
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EclXI	CGGCCG	1 cut(s)	163
Eco105I	TACGTA	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	348, 1102
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	629, 658
Eco52I	CGGCCG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	348, 1102
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	2 cut(s)	348, 1102
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	8 cut(s)	48, 520, 854, 879, 890, 947, 975, 1106
FalI	AAGNNNNNCTT	4 cut(s)	887, 919, 1025, 1057
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	8 cut(s)	44, 516, 850, 875, 886, 943, 971, 1102
FauI	CCCGC	3 cut(s)	166, 280, 323
FauNDI	CATATG	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	8 cut(s)	30, 97, 305, 678, 789, 1026, 1112, 1115
FokI	GGATG	4 cut(s)	484, 711, 933, 1016
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	8 cut(s)	30, 97, 305, 678, 789, 1026, 1112, 1115
GlaI	GCGC	5 cut(s)	108, 123, 232, 681, 703
GluI	GCNGC	8 cut(s)	30, 97, 305, 678, 789, 1026, 1112, 1115
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	6 cut(s)	117, 165, 180, 304, 483, 695
HapII	CCGG	4 cut(s)	162, 501, 696, 739
HhaI	GCGC	5 cut(s)	109, 124, 233, 682, 704
Hin1II	CATG	8 cut(s)	48, 520, 854, 879, 890, 947, 975, 1106
Hin6I	GCGC	5 cut(s)	107, 122, 231, 680, 702
HinP1I	GCGC	5 cut(s)	107, 122, 231, 680, 702
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	5 cut(s)	77, 140, 242, 855, 1038
HpaII	CCGG	4 cut(s)	162, 501, 696, 739
HphI	GGTGA	1 cut(s)	1006
Hpy166II	GTNNAC	3 cut(s)	589, 688, 1064
Hpy188I	TCNGA	4 cut(s)	88, 228, 1050, 1072
Hpy188III	TCNNGA	3 cut(s)	239, 511, 548
Hpy8I	GTNNAC	3 cut(s)	589, 688, 1064
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	2 cut(s)	354, 651
HpyCH4V	TGCA	3 cut(s)	48, 791, 1012
HpyF10VI	GCNNNNNNNGC	5 cut(s)	162, 171, 278, 467, 701
HpyF3I	CTNAG	3 cut(s)	227, 1020, 1069
HpySE526I	ACGT	2 cut(s)	354, 651
Hsp92II	CATG	8 cut(s)	48, 520, 854, 879, 890, 947, 975, 1106
HspAI	GCGC	5 cut(s)	107, 122, 231, 680, 702
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	389, 1045
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	3 cut(s)	41, 775, 1123
LweI	GCATC	1 cut(s)	689
MaeII	ACGT	2 cut(s)	354, 651
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	391, 1047
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	2 cut(s)	389, 1045
MboII	GAAGA	4 cut(s)	103, 458, 635, 1033
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	4 cut(s)	50, 215, 997, 1091
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	3 cut(s)	71, 149, 1047
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	43, 404, 593, 839, 920, 1015
Mox20I	TGGCCA	1 cut(s)	483
MroNI	GCCGGC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	5 cut(s)	5, 494, 567, 579, 767
Msp20I	TGGCCA	1 cut(s)	483
MspI	CCGG	4 cut(s)	162, 501, 696, 739
MspR9I	CCNGG	2 cut(s)	119, 740
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	124, 680
MwoI	GCNNNNNNNGC	5 cut(s)	162, 171, 278, 467, 701
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	740
NcoI	CCATGG	1 cut(s)	1102
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	2 cut(s)	389, 1045
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	8 cut(s)	48, 520, 854, 879, 890, 947, 975, 1106
NlaIV	GGNNCC	1 cut(s)	631
NspI	RCATGY	3 cut(s)	520, 879, 975
PaeI	GCATGC	1 cut(s)	975
PciI	ACATGT	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	242, 855
PkrI	GCNGC	8 cut(s)	31, 98, 306, 679, 790, 1027, 1113, 1116
PleI	GAGTC	3 cut(s)	71, 148, 1046
PpsI	GAGTC	3 cut(s)	71, 148, 1046
Ppu21I	YACGTR	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	629
PscI	ACATGT	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	2 cut(s)	629, 658
PspPPI	RGGWCCY	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	3 cut(s)	362, 824, 899
RsaNI	GTAC	3 cut(s)	361, 823, 898
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	5, 494, 567, 579, 767
SatI	GCNGC	8 cut(s)	30, 97, 305, 678, 789, 1026, 1112, 1115
Sau3AI	GATC	2 cut(s)	389, 1045
Sau96I	GGNCC	2 cut(s)	629, 658
ScaI	AGTACT	1 cut(s)	824
SchI	GAGTC	3 cut(s)	71, 149, 1047
ScrFI	CCNGG	2 cut(s)	119, 740
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	1 cut(s)	689
SinI	GGWCC	2 cut(s)	629, 658
SnaBI	TACGTA	1 cut(s)	652
SphI	GCATGC	1 cut(s)	975
Sse9I	AATT	4 cut(s)	50, 215, 997, 1091
SsiI	CCGC	8 cut(s)	96, 159, 287, 305, 330, 661, 678, 1025
StyD4I	CCNGG	2 cut(s)	117, 738
StyI	CCWWGG	2 cut(s)	348, 1102
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	2 cut(s)	357, 654
TaqI	TCGA	2 cut(s)	409, 1044
TasI	AATT	4 cut(s)	50, 215, 997, 1091
TatI	WGTACW	3 cut(s)	360, 822, 897
TauI	GCSGC	4 cut(s)	99, 307, 680, 1028
TfiI	GAWTC	2 cut(s)	242, 855
Tru1I	TTAA	5 cut(s)	5, 494, 567, 579, 767
Tru9I	TTAA	5 cut(s)	5, 494, 567, 579, 767
TscAI	CASTG	2 cut(s)	24, 1024
TseI	GCWGC	4 cut(s)	29, 788, 1111, 1114
TspDTI	ATGAA	1 cut(s)	932
TspGWI	ACGGA	2 cut(s)	150, 282
TspRI	CASTG	2 cut(s)	24, 1024
VpaK11BI	GGWCC	2 cut(s)	629, 658
XapI	RAATTY	2 cut(s)	50, 1091
XceI	RCATGY	3 cut(s)	520, 879, 975
XmiI	GTMKAC	1 cut(s)	588
ZrmI	AGTACT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.