Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Forward (+)

44185418 .. 44186477

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0268900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTTTCGAACGCCTTCCTAAGAGCTATGGTGTGTTCTTGAATTGCAAGGCACCCCAAGTATTATCCGAAAGGCACACCATAATAGAGGACTGCCGTTATAGTACCTCTCCCATGACACCACAAAAAGTCTTTCTCCCTTCAGATCAAAACTTCAATGCTACAAAAGACGAGTACCGTGGAAGCAGCTGGCCCAACACGACCAGTCACGCCACCATAGTAAAGGACTACCGTTATAGTACCTCTCCCATGACACCACAAAAAGTCTTTCTCCCTTCAGATGAAAACTTCAATGCTACAAAAGATGAGTACCGTGGAAGCAGCTGGCCCAACACGACCAGTCACGCCAGTACTAGTCCTCCTCTTCCTCGTCCTTCTCAAGGCTACTATCATCCACAAGTAGTCAAAATGGAATATCATCAAGTTCCTAATCACACCAAGAGGTATGGCAACATCGAACATCCTCCGTCTGCGGAAAGGCCCATCAACAGCACCGAAGCAGCCAAAAAATACGGAGGATATGTGATCACTGAATTCCGTAACAAAAATTCGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0015928 GO:0016298 GO:0016787 GO:0016788 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

185

Amino Acids

21.2

Weight (kDa)

9.26

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	1 cut(s)	553
AciI	CCGC	1 cut(s)	473
AcsI	RAATTY	2 cut(s)	533, 547
AcuI	CTGAAG	2 cut(s)	126, 261
AfaI	GTAC	5 cut(s)	106, 176, 241, 311, 352
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	43, 157, 292
AhlI	ACTAGT	1 cut(s)	353
AluBI	AGCT	3 cut(s)	27, 189, 324
AluI	AGCT	3 cut(s)	27, 189, 324
AoxI	GGCC	3 cut(s)	191, 326, 479
ApeKI	GCWGC	3 cut(s)	186, 321, 500
ApoI	RAATTY	2 cut(s)	533, 547
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	3 cut(s)	192, 327, 480
AsuII	TTCGAA	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	198, 333, 512
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	525
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	3 cut(s)	187, 322, 501
BlsI	GCNGC	3 cut(s)	188, 323, 502
BmcAI	AGTACT	1 cut(s)	352
BmgT120I	GGNCC	3 cut(s)	192, 327, 480
BmiI	GGNNCC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	178, 313
BsaXI	ACNNNNNCTCC	4 cut(s)	343, 373, 507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	204, 339, 348
BseDI	CCNNGG	2 cut(s)	178, 313
BseGI	GGATG	2 cut(s)	391, 460
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseNI	ACTGG	3 cut(s)	204, 339, 348
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	198, 333, 512
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	3 cut(s)	193, 328, 481
BshNI	GGYRCC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	380
BsnI	GGCC	3 cut(s)	193, 328, 481
Bsp119I	TTCGAA	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	145, 525
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	3 cut(s)	193, 328, 481
BspFNI	CGCG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	52
BsrI	ACTGG	3 cut(s)	204, 339, 348
BssECI	CCNNGG	2 cut(s)	178, 313
BssMI	GATC	2 cut(s)	145, 525
Bst4CI	ACNGT	3 cut(s)	179, 233, 314
Bst6I	CTCTTC	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	191, 326
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	2 cut(s)	178, 313
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	391, 460
BstFNI	CGCG	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	2 cut(s)	148, 528
BstMBI	GATC	2 cut(s)	145, 525
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	3 cut(s)	198, 333, 512
BsuRI	GGCC	3 cut(s)	193, 328, 481
BtgI	CCRYGG	2 cut(s)	178, 313
BtsCI	GGATG	2 cut(s)	391, 460
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	191, 326
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	3 cut(s)	192, 327, 480
Csp6I	GTAC	5 cut(s)	105, 175, 240, 310, 351
CviAII	CATG	2 cut(s)	115, 250
CviJI	RGCY	9 cut(s)	5, 27, 189, 193, 324, 328, 384, 481, 503
CviKI_1	RGCY	9 cut(s)	5, 27, 189, 193, 324, 328, 384, 481, 503
CviQI	GTAC	5 cut(s)	105, 175, 240, 310, 351
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	147, 527
DpnII	GATC	2 cut(s)	145, 525
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	126, 261
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	533
FaeI	CATG	2 cut(s)	118, 253
FaiI	YATR	9 cut(s)	30, 83, 102, 116, 218, 237, 251, 447, 522
FatI	CATG	2 cut(s)	114, 249
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	187, 322, 501
FokI	GGATG	2 cut(s)	378, 447
Fsp4HI	GCNGC	3 cut(s)	187, 322, 501
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	3 cut(s)	187, 322, 501
HaeIII	GGCC	3 cut(s)	193, 328, 481
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	118, 253
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
Hpy188I	TCNGA	3 cut(s)	70, 145, 280
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	26, 150, 285, 384
HpyCH4III	ACNGT	3 cut(s)	179, 233, 314
HpyCH4V	TGCA	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	118, 253
HspAI	GCGC	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	2 cut(s)	145, 525
LpnPI	CCDG	5 cut(s)	175, 217, 310, 352, 361
Lsp1109I	GCAGC	3 cut(s)	198, 333, 512
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	206, 341, 539
MalI	GATC	2 cut(s)	147, 527
MboI	GATC	2 cut(s)	145, 525
MboII	GAAGA	1 cut(s)	356
MluCI	AATT	3 cut(s)	43, 533, 547
MnlI	CCTC	9 cut(s)	82, 118, 253, 369, 372, 378, 435, 474, 509
MroXI	GAANNNNTTC	1 cut(s)	15
MspA1I	CMGCKG	2 cut(s)	189, 324
MvnI	CGCG	1 cut(s)	553
NdeII	GATC	2 cut(s)	145, 525
NlaIII	CATG	2 cut(s)	118, 253
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	206, 341
NspV	TTCGAA	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	188, 323, 502
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	3 cut(s)	192, 327, 480
PvuII	CAGCTG	2 cut(s)	189, 324
RsaI	GTAC	5 cut(s)	106, 176, 241, 311, 352
RsaNI	GTAC	5 cut(s)	105, 175, 240, 310, 351
SatI	GCNGC	3 cut(s)	187, 322, 501
Sau3AI	GATC	2 cut(s)	145, 525
Sau96I	GGNCC	3 cut(s)	192, 327, 480
ScaI	AGTACT	1 cut(s)	352
SetI	ASST	6 cut(s)	29, 110, 191, 245, 326, 446
SfuI	TTCGAA	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	3 cut(s)	43, 533, 547
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	179, 233, 314
TaqI	TCGA	2 cut(s)	9, 456
TasI	AATT	3 cut(s)	43, 533, 547
TatI	WGTACW	1 cut(s)	350
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	2 cut(s)	206, 341
TseI	GCWGC	3 cut(s)	186, 321, 500
Tsp45I	GTSAC	2 cut(s)	206, 341
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	3 cut(s)	456, 527, 528
TspRI	CASTG	1 cut(s)	535
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	533, 547
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.