Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425109.1

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1444

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425109.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 835 bp

aacttcccagccgtattcaacttcggcgactcaaactccgacaccggtggcttgtctgcagtcttcggccaggcacgttcacctcacggcgagtccttcttccacggcccggctggccggtactgtgacggccgcctcctcattgattttatagctaaaagccttggactaccatatcttagcgcatatctcgactcggtgggaagcaacttcactcacggagctaacttcgcgacggccggatcgaccatccggcctcagaacacaactattcaacagagtgggtttagtcccatctccttaaacgttcagtacaacgagttctatgattttcttcctaggtcccaagttgctcggaatcgaggtggagtttttgcacaactaatgcccaaagctgaggatttctctcgtgccttgtacaccttcgatattggtcagaacgacttgacagccggtttgttcttgaacatgtccgtcgcccaagttaaagcatttgttcctgatgtactcgataagttcaaagacgtcgtcaagtatgtacacagtcaaggaggtagatttttctggatacacaacacgggaccggtcggttgcctaccctatgtattggaccgcctaccggtcttaccctcggaggtggaccgccacgggtgcgccacacctttcaatgaacttgctcagtttttcaaccgtggattaaagcacgctgtggtccagttaaggaaagagctaccttcggctgcaatcacatatgttgatgtttacaaggccaagttcaacctcattagccaaccacaaaagcatggcaagtccttaaccctacactttccatctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0015928 GO:0016298 GO:0016787 GO:0016788 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

278

Amino Acids

30.65

Weight (kDa)

8.92

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	528
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	133, 613, 643
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	4 cut(s)	67, 115, 130, 237
AcyI	GRCGYC	1 cut(s)	525
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	5 cut(s)	122, 314, 419, 507, 540
AfiI	CCNNNNNNNGG	2 cut(s)	109, 619
AflIII	ACRYGT	1 cut(s)	468
AgeI	ACCGGT	3 cut(s)	44, 583, 619
AgsI	TTSAA	7 cut(s)	19, 275, 466, 520, 667, 688, 778
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	155, 224, 395, 730
AluI	AGCT	4 cut(s)	155, 224, 395, 730
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	7 cut(s)	67, 106, 115, 130, 237, 254, 768
ApeKI	GCWGC	1 cut(s)	740
ArsI	GACNNNNNNTTYG	4 cut(s)	439, 471, 513, 545
AsiGI	ACCGGT	3 cut(s)	44, 583, 619
AspA2I	CCTAGG	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	185, 656
AspS9I	GGNCC	6 cut(s)	107, 342, 581, 610, 640, 712
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	72
AvaII	GGWCC	5 cut(s)	342, 581, 610, 640, 712
AvrII	CCTAGG	1 cut(s)	338
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	2 cut(s)	257, 302
BceAI	ACGGC	4 cut(s)	103, 121, 145, 252
BciT130I	CCWGG	1 cut(s)	71
BciVI	GTATCC	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	561
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	133, 741
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	2 cut(s)	134, 742
Bme1390I	CCNGG	2 cut(s)	71, 110
Bme18I	GGWCC	5 cut(s)	342, 581, 610, 640, 712
BmgT120I	GGNCC	6 cut(s)	107, 342, 581, 610, 640, 712
BmiI	GGNNCC	2 cut(s)	344, 582
BmrFI	CCNGG	2 cut(s)	71, 110
BpiI	GAAGAC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	6 cut(s)	103, 163, 338, 630, 646, 691
BsaWI	WCCGGW	3 cut(s)	44, 583, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 619
Bse118I	RCCGGY	5 cut(s)	44, 117, 452, 583, 619
Bse1I	ACTGG	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	6 cut(s)	103, 163, 338, 630, 646, 691
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	109, 619
BseMII	CTCAG	3 cut(s)	272, 387, 692
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	1 cut(s)	128
BseX3I	CGGCCG	2 cut(s)	130, 237
BseXI	GCAGC	1 cut(s)	727
BseYI	CCCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	3 cut(s)	133, 240, 588
BshFI	GGCC	7 cut(s)	69, 108, 117, 132, 239, 256, 770
BshTI	ACCGGT	3 cut(s)	44, 583, 619
BsiEI	CGRYCG	3 cut(s)	133, 240, 588
BsiSI	CCGG	8 cut(s)	45, 110, 118, 240, 253, 453, 584, 620
BslFI	GGGAC	3 cut(s)	276, 328, 594
BslI	CCNNNNNNNGG	2 cut(s)	109, 619
BsmFI	GGGAC	3 cut(s)	276, 328, 594
BsnI	GGCC	7 cut(s)	69, 108, 117, 132, 239, 256, 770
Bsp1407I	TGTACA	2 cut(s)	417, 538
Bsp143I	GATC	1 cut(s)	242
Bsp68I	TCGCGA	1 cut(s)	233
BspACI	CCGC	3 cut(s)	133, 613, 643
BspANI	GGCC	7 cut(s)	69, 108, 117, 132, 239, 256, 770
BspCNI	CTCAG	3 cut(s)	271, 388, 691
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	344, 582
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	1 cut(s)	250
BsrFI	RCCGGY	5 cut(s)	44, 117, 452, 583, 619
BsrGI	TGTACA	2 cut(s)	417, 538
BsrI	ACTGG	1 cut(s)	715
BssAI	RCCGGY	5 cut(s)	44, 117, 452, 583, 619
BssECI	CCNNGG	6 cut(s)	103, 163, 338, 630, 646, 691
BssMI	GATC	1 cut(s)	242
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	163, 338
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	125, 545, 692
BstACI	GRCGYC	1 cut(s)	525
BstAUI	TGTACA	2 cut(s)	417, 538
BstC8I	GCNNGC	2 cut(s)	115, 705
BstDEI	CTNAG	4 cut(s)	179, 258, 396, 678
BstDSI	CCRYGG	3 cut(s)	103, 646, 691
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	185, 656
BstKTI	GATC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	242
BstMCI	CGRYCG	3 cut(s)	133, 240, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 230, 651
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	69, 108
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	55
BstZI	CGGCCG	2 cut(s)	130, 237
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	7 cut(s)	69, 108, 117, 132, 239, 256, 770
BtgI	CCRYGG	3 cut(s)	103, 646, 691
BtsCI	GGATG	1 cut(s)	249
BtuMI	TCGCGA	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	115, 705
CfoI	GCGC	2 cut(s)	185, 656
Cfr10I	RCCGGY	5 cut(s)	44, 117, 452, 583, 619
Cfr13I	GGNCC	6 cut(s)	107, 342, 581, 610, 640, 712
Csp6I	GTAC	5 cut(s)	121, 313, 418, 506, 539
CspAI	ACCGGT	3 cut(s)	44, 583, 619
CviAII	CATG	2 cut(s)	469, 803
CviQI	GTAC	5 cut(s)	121, 313, 418, 506, 539
DdeI	CTNAG	4 cut(s)	179, 258, 396, 678
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DraIII	CACNNNGTG	1 cut(s)	709
EaeI	YGGCCR	4 cut(s)	67, 115, 130, 237
EagI	CGGCCG	2 cut(s)	130, 237
EclXI	CGGCCG	2 cut(s)	130, 237
Eco130I	CCWWGG	2 cut(s)	163, 338
Eco47I	GGWCC	5 cut(s)	342, 581, 610, 640, 712
Eco52I	CGGCCG	2 cut(s)	130, 237
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	163, 338
ErhI	CCWWGG	2 cut(s)	163, 338
FaeI	CATG	2 cut(s)	472, 806
FaqI	GGGAC	3 cut(s)	276, 328, 594
FatI	CATG	2 cut(s)	468, 802
FauNDI	CATATG	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	133, 741
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	133, 741
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	2 cut(s)	184, 655
GluI	GCNGC	2 cut(s)	133, 741
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	7 cut(s)	69, 108, 117, 132, 239, 256, 770
HapII	CCGG	8 cut(s)	45, 110, 118, 240, 253, 453, 584, 620
HhaI	GCGC	2 cut(s)	185, 656
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	472, 806
Hin6I	GCGC	2 cut(s)	183, 654
HinP1I	GCGC	2 cut(s)	183, 654
HinfI	GANTC	4 cut(s)	29, 92, 194, 358
HpaII	CCGG	8 cut(s)	45, 110, 118, 240, 253, 453, 584, 620
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	5 cut(s)	80, 420, 541, 640, 763
Hpy188I	TCNGA	5 cut(s)	40, 261, 357, 438, 634
Hpy188III	TCNNGA	5 cut(s)	191, 232, 463, 500, 565
Hpy8I	GTNNAC	5 cut(s)	80, 420, 541, 640, 763
Hpy99I	CGWCG	3 cut(s)	238, 479, 530
HpyAV	CCTTC	3 cut(s)	106, 433, 744
HpyCH4III	ACNGT	3 cut(s)	125, 545, 692
HpyCH4IV	ACGT	3 cut(s)	76, 306, 525
HpyCH4V	TGCA	3 cut(s)	59, 377, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 230, 651
HpyF3I	CTNAG	4 cut(s)	179, 258, 396, 678
HpySE526I	ACGT	3 cut(s)	76, 306, 525
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	2 cut(s)	472, 806
HspAI	GCGC	2 cut(s)	183, 654
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	1 cut(s)	727
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	3 cut(s)	76, 306, 525
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	3 cut(s)	55, 91, 326
MlyI	GAGTC	3 cut(s)	23, 101, 188
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	5 cut(s)	302, 486, 698, 719, 815
MspI	CCGG	8 cut(s)	45, 110, 118, 240, 253, 453, 584, 620
MspR9I	CCNGG	2 cut(s)	71, 110
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	114, 230, 651
NciI	CCSGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	472, 806
NlaIV	GGNNCC	2 cut(s)	344, 582
NmuCI	GTSAC	1 cut(s)	125
NruI	TCGCGA	1 cut(s)	233
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	527
PinAI	ACCGGT	3 cut(s)	44, 583, 619
PkrI	GCNGC	2 cut(s)	134, 742
PleI	GAGTC	3 cut(s)	23, 100, 188
PpsI	GAGTC	3 cut(s)	23, 100, 188
PpuMI	RGGWCCY	1 cut(s)	342
PscI	ACATGT	1 cut(s)	468
Psp1406I	AACGTT	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	344, 582
PspPI	GGNCC	6 cut(s)	107, 342, 581, 610, 640, 712
PspPPI	RGGWCCY	1 cut(s)	342
PsrI	GAACNNNNNNTAC	2 cut(s)	305, 337
PstI	CTGCAG	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	527
RruI	TCGCGA	1 cut(s)	233
RsaI	GTAC	5 cut(s)	122, 314, 419, 507, 540
RsaNI	GTAC	5 cut(s)	121, 313, 418, 506, 539
SaqAI	TTAA	5 cut(s)	302, 486, 698, 719, 815
SatI	GCNGC	2 cut(s)	133, 741
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	6 cut(s)	107, 342, 581, 610, 640, 712
SchI	GAGTC	3 cut(s)	23, 101, 188
ScrFI	CCNGG	2 cut(s)	71, 110
SfcI	CTRYAG	1 cut(s)	57
SfiI	GGCCNNNNNGGCC	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	5 cut(s)	342, 581, 610, 640, 712
SsiI	CCGC	3 cut(s)	133, 613, 643
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	69, 108
StyI	CCWWGG	2 cut(s)	163, 338
TaaI	ACNGT	3 cut(s)	125, 545, 692
TaiI	ACGT	3 cut(s)	79, 309, 528
TaqI	TCGA	5 cut(s)	192, 245, 361, 426, 510
TatI	WGTACW	4 cut(s)	312, 417, 505, 538
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	5 cut(s)	302, 486, 698, 719, 815
Tru9I	TTAA	5 cut(s)	302, 486, 698, 719, 815
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	684
TspGWI	ACGGA	2 cut(s)	234, 463
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	5 cut(s)	342, 581, 610, 640, 712
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmaJI	CCTAGG	1 cut(s)	338
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.