Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Reverse (-)

25967940 .. 25970684

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G246700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTTTGAAGCAAGATATAGCCCCATCTCTCTTAACCTACAGCTTTCACAATTTGCGCAGTTCAAAGCACGTGTAAATGAGGTTTTCACTGAAGATAAAAGGACCAGCCTCCCAAGACCAAGAGATTTCTCCAAGGCCTTGTACACATTAGACATTGGACAAAACGATCTTCATGCTGGATTAAGGTTGAAGACTATGGACGAAGTTAGCTTTGACAATAGAGCACCATGCTTGGCTTTGGCCTCAACTTCGTGCAAATTTCCAGCTATATTCAACTTTGGTGACTCAAACTCCGACACTGGTGGCTTGTCTGCGGTTTTCGGCCAGGCTCGCTCGCCCCATGGAGAGTCCTACTTCCACGGCCCAGCAGGTCGTTACTGCGATGGCCGTCTTGTCATTGATTTTATAGCTAAGAGCTTCGGATTGCCATTTCTTAGCGCATATCTTGATTCTGTGGGGAGCAACTTCAGCCATGGAGCCAACTTTGCCACGGCTGGCTCAACCATCAGACCCCAGAACACAACTCTTCGCCAGAGTGGTTTCAGCCCCATCTCACTGGACGTTCAATACAATGAGTTCTATGATTTTCATCCAAGATCCCAAGTTGCTCGAAATCGAGGTGGGGTTTTTAAACAACTCATGCCTAAAGCACAAGATTTCTCTCGTGCATTGTACACCTTTGATATTGGCCAGAACGATTTAACGGCCGGTTTGTTCTTGAACATGTCCACTACCCAAGTAAAAGCTTATGTTCCTGATGTCCTAAATCAGTTCAAAAACATTGTCAAGAACATATATGGTCAAGGAGGTAGATATTTCTGGATACACAATACAGGTCCCATTGGTTGTCTTCCATACGTTTTGGACCGCCTACCTGTATTAGCCGCTCAGGTAGACAACGCCGGATGTGCCATACCTTACAATAAAGTTGCTCAATTTTTCAACCGTGGATTAAAACAGGCTGTGTTCCAATTAAGAAAAGATCTGCCATTGGCTGCAATCACATATGTTGATGTTTACTCAGCCAAATACTCCCTCATTAGCCAACCCGAAAAGCATGGATTTAAGGAACCAGTAAGAGCATGTTGTGGTCATGGTGGGAAGTACAATTATAACTTGCACATTGGATGTGGAGGAAAGGCTAAGGTTCATGGCAAAGTAAAATTGGTTGGAAAGGCATGCCAAGACCCATCTCTCTGGGTGAATTGGGATGGTGTGCATTACACTCAAGCAGCTAACAAAAGGGTGTTTGATCAGATTGTAGATGGTTCATTTTCAGACCCACCAATTCCATTGAAAAGGGCTTGCCATAGGCAGCAAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0015928 GO:0016298 GO:0016787 GO:0016788 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

443

Amino Acids

49.06

Weight (kDa)

9.3

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1113
Acc16I	TGCGCA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	894
AciI	CCGC	3 cut(s)	314, 868, 885
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	4 cut(s)	322, 385, 688, 705
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	2 cut(s)	111, 451
AcvI	CACGTG	1 cut(s)	71
AfaI	GTAC	3 cut(s)	143, 674, 1106
AflIII	ACRYGT	2 cut(s)	70, 723
AgsI	TTSAA	9 cut(s)	8, 64, 190, 274, 566, 721, 775, 943, 1297
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	8 cut(s)	43, 210, 266, 410, 417, 746, 1235, 1322
AluI	AGCT	8 cut(s)	43, 210, 266, 410, 417, 746, 1235, 1322
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	7 cut(s)	135, 240, 322, 361, 385, 688, 705
ApeKI	GCWGC	3 cut(s)	995, 1232, 1315
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	768, 800
AspLEI	GCGC	2 cut(s)	58, 440
AspS9I	GGNCC	4 cut(s)	102, 362, 836, 865
AsuHPI	GGTGA	2 cut(s)	293, 1213
AvaII	GGWCC	3 cut(s)	102, 836, 865
BalI	TGGCCA	1 cut(s)	690
BauI	CACGAG	1 cut(s)	663
BbrPI	CACGTG	1 cut(s)	71
BbsI	GAAGAC	2 cut(s)	197, 842
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	982, 1244
BccI	CCATC	7 cut(s)	32, 377, 512, 557, 1198, 1205, 1259
BceAI	ACGGC	4 cut(s)	372, 376, 507, 720
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	816
BclI	TGATCA	1 cut(s)	1252
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	816
BglII	AGATCT	1 cut(s)	982
BisI	GCNGC	4 cut(s)	885, 996, 1233, 1316
BlsI	GCNGC	4 cut(s)	886, 997, 1234, 1317
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	3 cut(s)	102, 836, 865
BmgT120I	GGNCC	4 cut(s)	102, 362, 836, 865
BmiI	GGNNCC	3 cut(s)	478, 838, 1071
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	197, 842
Bpu10I	CCTNAGC	2 cut(s)	888, 1143
BpuEI	CTTGAG	1 cut(s)	1212
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	588
BsaJI	CCNNGG	6 cut(s)	132, 340, 358, 472, 489, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	304, 561, 1073
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	6 cut(s)	132, 340, 358, 472, 489, 946
BseGI	GGATG	4 cut(s)	589, 911, 1133, 1216
BseJI	GATNNNNATC	1 cut(s)	588
BseMII	CTCAG	2 cut(s)	902, 1035
BseNI	ACTGG	3 cut(s)	304, 561, 1073
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	982, 1244
BseYI	CCCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	7 cut(s)	137, 242, 324, 363, 387, 690, 707
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	708, 903
BslFI	GGGAC	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	7 cut(s)	137, 242, 324, 363, 387, 690, 707
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp1407I	TGTACA	2 cut(s)	141, 672
Bsp143I	GATC	4 cut(s)	166, 596, 982, 1252
Bsp19I	CCATGG	2 cut(s)	340, 472
BspACI	CCGC	3 cut(s)	314, 868, 885
BspANI	GGCC	7 cut(s)	137, 242, 324, 363, 387, 690, 707
BspCNI	CTCAG	2 cut(s)	901, 1034
BspLI	GGNNCC	3 cut(s)	478, 838, 1071
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	591
BsrBI	CCGCTC	1 cut(s)	887
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	2 cut(s)	141, 672
BsrI	ACTGG	3 cut(s)	304, 561, 1073
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	6 cut(s)	132, 340, 358, 472, 489, 946
BssMI	GATC	4 cut(s)	166, 596, 982, 1252
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	3 cut(s)	132, 340, 472
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	947
Bst6I	CTCTTC	1 cut(s)	531
BstAUI	TGTACA	2 cut(s)	141, 672
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	6 cut(s)	331, 335, 496, 1180, 1306, 1320
BstDEI	CTNAG	5 cut(s)	411, 434, 888, 1021, 1143
BstDSI	CCRYGG	5 cut(s)	340, 358, 472, 489, 946
BstF5I	GGATG	4 cut(s)	589, 911, 1133, 1216
BstHHI	GCGC	2 cut(s)	58, 440
BstKTI	GATC	4 cut(s)	169, 599, 985, 1255
BstMBI	GATC	4 cut(s)	166, 596, 982, 1252
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 468, 485, 908
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	3 cut(s)	727, 1086, 1182
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	982, 1244
BstV2I	GAAGAC	2 cut(s)	197, 842
BstX2I	RGATCY	2 cut(s)	596, 982
BstXI	CCANNNNNNTGG	2 cut(s)	556, 1197
BstYI	RGATCY	2 cut(s)	596, 982
BstZI	CGGCCG	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	816
BsuRI	GGCC	7 cut(s)	137, 242, 324, 363, 387, 690, 707
BtgI	CCRYGG	5 cut(s)	340, 358, 472, 489, 946
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	4 cut(s)	589, 911, 1133, 1216
BtsIMutI	CAGTG	3 cut(s)	87, 297, 554
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	6 cut(s)	331, 335, 496, 1180, 1306, 1320
CfoI	GCGC	2 cut(s)	58, 440
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	4 cut(s)	102, 362, 836, 865
Csp6I	GTAC	3 cut(s)	142, 673, 1105
CviQI	GTAC	3 cut(s)	142, 673, 1105
DdeI	CTNAG	5 cut(s)	411, 434, 888, 1021, 1143
DpnI	GATC	4 cut(s)	168, 598, 984, 1254
DpnII	GATC	4 cut(s)	166, 596, 982, 1252
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	4 cut(s)	322, 385, 688, 705
EagI	CGGCCG	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	132, 340, 472
Eco147I	AGGCCT	1 cut(s)	137
Eco47I	GGWCC	3 cut(s)	102, 836, 865
Eco52I	CGGCCG	1 cut(s)	705
Eco57I	CTGAAG	2 cut(s)	111, 451
Eco72I	CACGTG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	3 cut(s)	132, 340, 472
ErhI	CCWWGG	3 cut(s)	132, 340, 472
FaqI	GGGAC	1 cut(s)	822
FauNDI	CATATG	1 cut(s)	1006
FbaI	TGATCA	1 cut(s)	1252
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	4 cut(s)	885, 996, 1233, 1316
FokI	GGATG	4 cut(s)	576, 918, 1140, 1223
Fsp4HI	GCNGC	4 cut(s)	885, 996, 1233, 1316
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	2 cut(s)	57, 439
GluI	GCNGC	4 cut(s)	885, 996, 1233, 1316
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	7 cut(s)	137, 242, 324, 363, 387, 690, 707
HapII	CCGG	2 cut(s)	708, 903
HhaI	GCGC	2 cut(s)	58, 440
Hin6I	GCGC	2 cut(s)	56, 438
HinP1I	GCGC	2 cut(s)	56, 438
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	3 cut(s)	284, 347, 449
HpaII	CCGG	2 cut(s)	708, 903
HphI	GGTGA	2 cut(s)	293, 1213
Hpy166II	GTNNAC	5 cut(s)	144, 675, 729, 895, 1018
Hpy188I	TCNGA	5 cut(s)	295, 422, 509, 1257, 1279
Hpy188III	TCNNGA	5 cut(s)	446, 718, 755, 787, 820
Hpy8I	GTNNAC	5 cut(s)	144, 675, 729, 895, 1018
HpyCH4III	ACNGT	1 cut(s)	947
HpyCH4IV	ACGT	3 cut(s)	70, 561, 858
HpyCH4V	TGCA	5 cut(s)	255, 668, 998, 1120, 1219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 468, 485, 908
HpyF3I	CTNAG	5 cut(s)	411, 434, 888, 1021, 1143
HpySE526I	ACGT	3 cut(s)	70, 561, 858
HspAI	GCGC	2 cut(s)	56, 438
Ksp22I	TGATCA	1 cut(s)	1252
Kzo9I	GATC	4 cut(s)	166, 596, 982, 1252
LmnI	GCTCC	2 cut(s)	459, 476
Lsp1109I	GCAGC	2 cut(s)	982, 1244
MaeII	ACGT	3 cut(s)	70, 561, 858
MaeIII	GTNAC	2 cut(s)	281, 374
MalI	GATC	4 cut(s)	168, 598, 984, 1254
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	4 cut(s)	166, 596, 982, 1252
MboII	GAAGA	5 cut(s)	104, 161, 202, 518, 842
MflI	RGATCY	2 cut(s)	596, 982
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	8 cut(s)	50, 257, 935, 971, 1108, 1163, 1204, 1287
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	2 cut(s)	278, 356
MmeI	TCCRAC	2 cut(s)	318, 1150
MnlI	CCTC	7 cut(s)	73, 119, 253, 611, 800, 1046, 1127
Mox20I	TGGCCA	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	7 cut(s)	33, 182, 630, 701, 953, 974, 1065
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	2 cut(s)	708, 903
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	330, 468, 485, 908
NcoI	CCATGG	2 cut(s)	340, 472
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	4 cut(s)	166, 596, 982, 1252
NlaIV	GGNNCC	3 cut(s)	478, 838, 1071
NmuCI	GTSAC	1 cut(s)	281
NsbI	TGCGCA	1 cut(s)	57
NspI	RCATGY	3 cut(s)	727, 1086, 1182
PaeI	GCATGC	1 cut(s)	1182
PceI	AGGCCT	1 cut(s)	137
PciI	ACATGT	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	886, 997, 1234, 1317
PleI	GAGTC	2 cut(s)	278, 355
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	2 cut(s)	278, 355
Ppu21I	YACGTR	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	836
PscI	ACATGT	1 cut(s)	723
PsiI	TTATAA	1 cut(s)	1113
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	478, 838, 1071
PspPI	GGNCC	4 cut(s)	102, 362, 836, 865
PspPPI	RGGWCCY	1 cut(s)	836
PsuI	RGATCY	2 cut(s)	596, 982
RsaI	GTAC	3 cut(s)	143, 674, 1106
RsaNI	GTAC	3 cut(s)	142, 673, 1105
SaqAI	TTAA	7 cut(s)	33, 182, 630, 701, 953, 974, 1065
SatI	GCNGC	4 cut(s)	885, 996, 1233, 1316
Sau3AI	GATC	4 cut(s)	166, 596, 982, 1252
Sau96I	GGNCC	4 cut(s)	102, 362, 836, 865
SchI	GAGTC	2 cut(s)	278, 356
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	38
SinI	GGWCC	3 cut(s)	102, 836, 865
SmlI	CTYRAG	1 cut(s)	1227
SmoI	CTYRAG	1 cut(s)	1227
SphI	GCATGC	1 cut(s)	1182
Sse9I	AATT	8 cut(s)	50, 257, 935, 971, 1108, 1163, 1204, 1287
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	314, 868, 885
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	3 cut(s)	132, 340, 472
TaaI	ACNGT	1 cut(s)	947
TaiI	ACGT	3 cut(s)	73, 564, 861
TaqI	TCGA	2 cut(s)	610, 616
TasI	AATT	8 cut(s)	50, 257, 935, 971, 1108, 1163, 1204, 1287
TatI	WGTACW	3 cut(s)	141, 672, 1104
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	7 cut(s)	33, 182, 630, 701, 953, 974, 1065
Tru9I	TTAA	7 cut(s)	33, 182, 630, 701, 953, 974, 1065
TscAI	CASTG	3 cut(s)	94, 304, 561
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	995, 1232, 1315
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	161, 578, 1139, 1260
TspRI	CASTG	3 cut(s)	94, 304, 561
VpaK11BI	GGWCC	3 cut(s)	102, 836, 865
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	3 cut(s)	727, 1086, 1182
XmiI	GTMKAC	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.