Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Forward (+)

44165647 .. 44166570

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTTTTGAGCGCTTTGCTATGAGAGACGAGAGCTACGGTGATTATTTCTTGAACTGCAAGGCACCACCAGTCGTATCCGAGCGCCGTACCATAATAGAGGACTGCCATGGCGTGCAGTTCCTTCGTAGCCCCCCCATGGCAGCGCAAAAAGTCATTGTCACCCCAGCAAATCAATACTTCCACGCTACGAAAGATGAGTACCATGGCAATAGCTGGCCCAAGACTACCAGTACTTCTAGGCCTCCTCTTCCTCATCCTCCTAGAGGCTACTATCCCCAACCGGTCAGCATGGGAAATCAAGTTCCTAATCTGACCAAAAGGCTTGAAGTTCCTCAGACGGCGAGAAAGCCCATCACTAGCGACGAGGCAGCCAAACTGTTCGGGGGTATTTTGATAACTGAATATCGTACCAAGAAACAGTATCGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

144

Amino Acids

16.43

Weight (kDa)

9.54

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccII	CGCG	1 cut(s)	429
AfaI	GTAC	4 cut(s)	91, 203, 235, 412
AfeI	AGCGCT	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	139, 266
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	55, 329
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	2 cut(s)	36, 216
AluI	AGCT	2 cut(s)	36, 216
Alw26I	GTCTC	1 cut(s)	21
Aor51HI	AGCGCT	1 cut(s)	14
AoxI	GGCC	2 cut(s)	218, 242
ApeKI	GCWGC	2 cut(s)	143, 371
AsiGI	ACCGGT	1 cut(s)	283
AspLEI	GCGC	4 cut(s)	15, 87, 148, 431
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	53, 154
BanI	GGYRCC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	155, 383
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	72, 357
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciVI	GTATCC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	3 cut(s)	240, 264, 360
BfoI	RGCGCY	2 cut(s)	16, 88
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	144, 372
BlsI	GCNGC	2 cut(s)	145, 373
BmcAI	AGTACT	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	109, 138, 205
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 266
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	71, 231
BseDI	CCNNGG	3 cut(s)	109, 138, 205
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	139, 266
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	71, 231
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	155, 383
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	220, 244
BshNI	GGYRCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	139, 266
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	220, 244
Bsp19I	CCATGG	3 cut(s)	109, 138, 205
BspANI	GGCC	2 cut(s)	220, 244
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	71, 231
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	109, 138, 205
BssT1I	CCWWGG	3 cut(s)	109, 138, 205
Bst4CI	ACNGT	3 cut(s)	41, 381, 423
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	116, 218
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	3 cut(s)	109, 138, 205
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	2 cut(s)	16, 88
BstHHI	GCGC	4 cut(s)	15, 87, 148, 431
BstMAI	GTCTC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	155, 383
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	220, 244
BtgI	CCRYGG	3 cut(s)	109, 138, 205
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	116, 218
CfoI	GCGC	4 cut(s)	15, 87, 148, 431
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	90, 202, 234, 411
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	4 cut(s)	110, 139, 206, 292
CviQI	GTAC	4 cut(s)	90, 202, 234, 411
DdeI	CTNAG	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	3 cut(s)	109, 138, 205
Eco147I	AGGCCT	1 cut(s)	244
Eco47III	AGCGCT	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	264
EcoT14I	CCWWGG	3 cut(s)	109, 138, 205
ErhI	CCWWGG	3 cut(s)	109, 138, 205
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	4 cut(s)	113, 142, 209, 295
FaiI	YATR	6 cut(s)	23, 95, 111, 140, 207, 293
FatI	CATG	4 cut(s)	109, 138, 205, 291
Fnu4HI	GCNGC	2 cut(s)	144, 372
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	144, 372
FspBI	CTAG	3 cut(s)	240, 264, 360
GlaI	GCGC	4 cut(s)	14, 86, 147, 430
GluI	GCNGC	2 cut(s)	144, 372
GsaI	CCCAGC	1 cut(s)	170
HaeII	RGCGCY	2 cut(s)	16, 88
HaeIII	GGCC	2 cut(s)	220, 244
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	4 cut(s)	15, 87, 148, 431
Hin1II	CATG	4 cut(s)	113, 142, 209, 295
Hin6I	GCGC	4 cut(s)	13, 85, 146, 429
HinP1I	GCGC	4 cut(s)	13, 85, 146, 429
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	53, 154
Hpy188I	TCNGA	3 cut(s)	82, 315, 339
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	41, 381, 423
HpyCH4V	TGCA	2 cut(s)	60, 118
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	113, 142, 209, 295
HspAI	GCGC	4 cut(s)	13, 85, 146, 429
LpnPI	CCDG	5 cut(s)	84, 180, 202, 244, 297
Lsp1109I	GCAGC	2 cut(s)	155, 383
MaeI	CTAG	3 cut(s)	240, 264, 360
MaeIII	GTNAC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	242
MnlI	CCTC	8 cut(s)	94, 255, 258, 260, 264, 270, 345, 361
MspI	CCGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	429
NcoI	CCATGG	3 cut(s)	109, 138, 205
NlaIII	CATG	4 cut(s)	113, 142, 209, 295
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	145, 373
PspFI	CCCAGC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	219
RsaI	GTAC	4 cut(s)	91, 203, 235, 412
RsaNI	GTAC	4 cut(s)	90, 202, 234, 411
SatI	GCNGC	2 cut(s)	144, 372
Sau96I	GGNCC	1 cut(s)	219
ScaI	AGTACT	1 cut(s)	235
SetI	ASST	2 cut(s)	38, 218
SseBI	AGGCCT	1 cut(s)	244
SspMI	CTAG	3 cut(s)	240, 264, 360
StuI	AGGCCT	1 cut(s)	244
StyI	CCWWGG	3 cut(s)	109, 138, 205
TaaI	ACNGT	3 cut(s)	41, 381, 423
TatI	WGTACW	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	143, 371
Tsp45I	GTSAC	1 cut(s)	160
XagI	CCTNNNNNAGG	1 cut(s)	264
XspI	CTAG	3 cut(s)	240, 264, 360
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.