Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000759.1

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Reverse (-)

11858 .. 13870

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000759.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggaccctgtgagagggcactggggaccgaagaggaatgtggaagcagtagcagttggtgttgttttagttggtgtactttcagtttttctgggcctcagaccccaaaagattcaatcaagtcgttgtcattttccggcaatctataactttggcgattcaaattccgacacaggtgcttcatcagctgtgttttatcggcttccttctccctatggcaatacattctttggcaaaccttcgggaaggttatccgatgggcgtctcatgatcgattttatagctcagaagttgggtttgccatttttgagtgcttatcttgattctgttggagcaaacttccgtcatggagcaaattttgcaacgggaggatctacaatcttgccaatagacggaaaattgttcgaaggaagatttagccccatctctcttggcaaacagttttcgcaatttgcccagcttaaagctcgtgtaaatgaggttctaagtcaagataaaagctcatatgtcagcgccagcatcccaaaaccagaggacttctcaaaggcattgtacaccttcgacatgggacagaacgatatttatgcgggattaagatttaaaacggtggaccaagtgctggaatccatttccgacatgacagctcagttagctttgacattagagattgtagttttgcagcaactataccagcaaggcggaagaatattttggatccataacacgggtccactcggctgcttgcctatgtgtcttgcacataatcagccagaacccgatggcctggaccagaatggctgtttgaagtcttacaatgaggtggcccaggagtttaacagacagctcaaggaaagagtgcttaatctaagagccaagctctcggatgcagttcttacatatgttgatctctatagagcaaaatacacgcttattagtgaaacagagaagcatggttttagtgatcctctagctcaatgctgcggacgccaaggtgattctcctttccattgcgggatgaatactactgctgtcaatggcactgaagtatttggtggctcttgtagtaatcctgcaaagtacattagctgggacggtgtgcactattcggatgctgcaaataaatgggtagccaaacgagttatagacggctcattctcagaccctccaatttcgatcactgaagcatgtcgcaagccttcacagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

402

Amino Acids

44.08

Weight (kDa)

8.01

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	619
AciI	CCGC	4 cut(s)	587, 699, 981, 1011
AclWI	GGATC	4 cut(s)	379, 709, 722, 956
AcsI	RAATTY	2 cut(s)	163, 355
AcuI	CTGAAG	2 cut(s)	1062, 1200
AcyI	GRCGYC	2 cut(s)	262, 985
AfaI	GTAC	3 cut(s)	78, 554, 1079
AfiI	CCNNNNNNNGG	4 cut(s)	14, 392, 619, 724
AgsI	TTSAA	3 cut(s)	116, 162, 805
AjnI	CCWGG	2 cut(s)	783, 825
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
Alw21I	GWGCWC	1 cut(s)	1101
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	1097
AlwI	GGATC	4 cut(s)	379, 709, 722, 956
AoxI	GGCC	3 cut(s)	94, 781, 822
ApaLI	GTGCAC	1 cut(s)	1097
ApeKI	GCWGC	4 cut(s)	679, 738, 978, 1112
ApoI	RAATTY	2 cut(s)	163, 355
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	7 cut(s)	4, 26, 94, 610, 728, 787, 823
AsuHPI	GGTGA	1 cut(s)	1004
AsuII	TTCGAA	1 cut(s)	405
AvaII	GGWCC	5 cut(s)	4, 26, 610, 728, 787
BaeGI	GKGCMC	2 cut(s)	21, 1101
BamHI	GGATCC	1 cut(s)	714
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	4 cut(s)	691, 725, 965, 1099
BccI	CCATC	3 cut(s)	251, 431, 773
BceAI	ACGGC	1 cut(s)	1162
BcgI	CGANNNNNNTGC	4 cut(s)	158, 192, 566, 600
BciT130I	CCWGG	2 cut(s)	785, 827
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	968
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	516
BisI	GCNGC	4 cut(s)	680, 739, 979, 1113
BlsI	GCNGC	4 cut(s)	681, 740, 980, 1114
Bme1390I	CCNGG	2 cut(s)	785, 827
Bme18I	GGWCC	5 cut(s)	4, 26, 610, 728, 787
BmgT120I	GGNCC	7 cut(s)	4, 26, 94, 610, 728, 787, 823
BmiI	GGNNCC	4 cut(s)	6, 27, 716, 729
BmrFI	CCNGG	2 cut(s)	785, 827
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	3 cut(s)	528, 874, 1099
BmuI	ACTGGG	1 cut(s)	31
BplI	GAGNNNNNCTC	4 cut(s)	524, 556, 861, 893
Bpu14I	TTCGAA	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	830
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	262, 985
BsaJI	CCNNGG	2 cut(s)	825, 988
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 392, 619, 724
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	1006
BseBI	CCWGG	2 cut(s)	785, 827
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	825, 988
BseGI	GGATG	4 cut(s)	519, 889, 1020, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	14, 392, 619, 724
BseMI	GCAATG	1 cut(s)	1006
BseMII	CTCAG	4 cut(s)	112, 299, 659, 1170
BseNI	ACTGG	1 cut(s)	26
BseSI	GKGCMC	2 cut(s)	21, 1101
BseXI	GCAGC	4 cut(s)	691, 725, 965, 1099
BseYI	CCCAGC	2 cut(s)	456, 1086
BshFI	GGCC	3 cut(s)	96, 783, 824
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	1101
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	3 cut(s)	39, 582, 1103
BslI	CCNNNNNNNGG	4 cut(s)	14, 392, 619, 724
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	3 cut(s)	39, 582, 1103
BsnI	GGCC	3 cut(s)	96, 783, 824
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	21, 1101
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
BspACI	CCGC	4 cut(s)	587, 699, 981, 1011
BspANI	GGCC	3 cut(s)	96, 783, 824
BspCNI	CTCAG	4 cut(s)	111, 298, 658, 1169
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	6, 27, 716, 729
BspPI	GGATC	4 cut(s)	379, 709, 722, 956
BspT104I	TTCGAA	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	1006
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	825, 988
BssMI	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
BssNI	GRCGYC	2 cut(s)	262, 985
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	988
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	785, 827
Bst4CI	ACNGT	3 cut(s)	441, 607, 1094
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	2 cut(s)	262, 985
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	552
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	517, 743, 1193
BstDEI	CTNAG	6 cut(s)	98, 285, 485, 645, 866, 1156
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	519, 889, 1020, 1114
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	6 cut(s)	273, 374, 717, 907, 964, 1176
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 359, 650, 984, 1201
BstNI	CCWGG	2 cut(s)	785, 827
BstNSI	RCATGY	1 cut(s)	1188
BstSCI	CCNGG	2 cut(s)	783, 825
BstSFI	CTRYAG	1 cut(s)	910
BstSLI	GKGCMC	2 cut(s)	21, 1101
BstV1I	GCAGC	4 cut(s)	691, 725, 965, 1099
BstX2I	RGATCY	2 cut(s)	371, 714
BstYI	RGATCY	2 cut(s)	371, 714
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	96, 783, 824
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	4 cut(s)	519, 889, 1020, 1114
BtsIMutI	CAGTG	3 cut(s)	19, 1038, 1176
Cac8I	GCNNGC	3 cut(s)	517, 743, 1193
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	7 cut(s)	4, 26, 94, 610, 728, 787, 823
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	2 cut(s)	251, 993
Csp6I	GTAC	3 cut(s)	77, 553, 1078
CviAII	CATG	6 cut(s)	268, 347, 565, 637, 950, 1185
CviQI	GTAC	3 cut(s)	77, 553, 1078
DdeI	CTNAG	6 cut(s)	98, 285, 485, 645, 866, 1156
DpnI	GATC	6 cut(s)	272, 373, 716, 906, 963, 1175
DpnII	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
DraI	TTTAAA	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	988
Eco47I	GGWCC	5 cut(s)	4, 26, 610, 728, 787
Eco57I	CTGAAG	2 cut(s)	1062, 1200
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	783, 825
EcoT14I	CCWWGG	1 cut(s)	988
ErhI	CCWWGG	1 cut(s)	988
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	6 cut(s)	271, 350, 568, 640, 953, 1188
FaqI	GGGAC	3 cut(s)	39, 582, 1103
FatI	CATG	6 cut(s)	267, 346, 564, 636, 949, 1184
FauI	CCCGC	2 cut(s)	580, 1004
FauNDI	CATATG	2 cut(s)	505, 898
Fnu4HI	GCNGC	4 cut(s)	680, 739, 979, 1113
FokI	GGATG	4 cut(s)	506, 896, 1027, 1121
Fsp4HI	GCNGC	4 cut(s)	680, 739, 979, 1113
FspBI	CTAG	1 cut(s)	968
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	4 cut(s)	680, 739, 979, 1113
GsaI	CCCAGC	2 cut(s)	460, 1090
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	96, 783, 824
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	2 cut(s)	251, 993
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	2 cut(s)	262, 985
Hin1II	CATG	6 cut(s)	271, 350, 568, 640, 953, 1188
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HinfI	GANTC	5 cut(s)	112, 158, 323, 623, 995
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	1004
Hpy166II	GTNNAC	5 cut(s)	77, 555, 610, 731, 1099
Hpy188I	TCNGA	8 cut(s)	101, 169, 256, 288, 634, 883, 1108, 1159
Hpy188III	TCNNGA	4 cut(s)	243, 268, 320, 491
Hpy8I	GTNNAC	5 cut(s)	77, 555, 610, 731, 1099
HpyAV	CCTTC	6 cut(s)	216, 240, 249, 401, 568, 1206
HpyCH4III	ACNGT	3 cut(s)	441, 607, 1094
HpyCH4V	TGCA	7 cut(s)	362, 679, 758, 887, 1073, 1099, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 359, 650, 984, 1201
HpyF3I	CTNAG	6 cut(s)	98, 285, 485, 645, 866, 1156
Hsp92I	GRCGYC	2 cut(s)	262, 985
Hsp92II	CATG	6 cut(s)	271, 350, 568, 640, 953, 1188
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
LmnI	GCTCC	2 cut(s)	332, 350
Lsp1109I	GCAGC	4 cut(s)	691, 725, 965, 1099
LweI	GCATC	3 cut(s)	528, 874, 1099
MaeI	CTAG	1 cut(s)	968
MalI	GATC	6 cut(s)	272, 373, 716, 906, 963, 1175
MboI	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
MboII	GAAGA	3 cut(s)	43, 423, 714
MflI	RGATCY	2 cut(s)	371, 714
MhlI	GDGCHC	2 cut(s)	21, 1101
MluCI	AATT	5 cut(s)	163, 355, 398, 449, 1167
MmeI	TCCRAC	3 cut(s)	192, 310, 657
MnlI	CCTC	9 cut(s)	8, 27, 107, 362, 472, 526, 811, 975, 1173
MseI	TTAA	5 cut(s)	462, 593, 600, 834, 861
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	785, 827
MvaI	CCWGG	2 cut(s)	785, 827
MwoI	GCNNNNNNNGC	5 cut(s)	185, 359, 650, 984, 1201
NdeI	CATATG	2 cut(s)	505, 898
NdeII	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
NlaIII	CATG	6 cut(s)	271, 350, 568, 640, 953, 1188
NlaIV	GGNNCC	4 cut(s)	6, 27, 716, 729
NmeAIII	GCCGAG	1 cut(s)	714
NspI	RCATGY	1 cut(s)	1188
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	5 cut(s)	112, 158, 323, 623, 995
PflMI	CCANNNNNTGG	1 cut(s)	619
PkrI	GCNGC	4 cut(s)	681, 740, 980, 1114
Psp6I	CCWGG	2 cut(s)	783, 825
PspFI	CCCAGC	2 cut(s)	456, 1086
PspGI	CCWGG	2 cut(s)	783, 825
PspN4I	GGNNCC	4 cut(s)	6, 27, 716, 729
PspPI	GGNCC	7 cut(s)	4, 26, 94, 610, 728, 787, 823
PsrI	GAACNNNNNNTAC	2 cut(s)	465, 497
PsuI	RGATCY	2 cut(s)	371, 714
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	78, 554, 1079
RsaNI	GTAC	3 cut(s)	77, 553, 1078
SaqAI	TTAA	5 cut(s)	462, 593, 600, 834, 861
SatI	GCNGC	4 cut(s)	680, 739, 979, 1113
Sau3AI	GATC	6 cut(s)	270, 371, 714, 904, 961, 1173
Sau96I	GGNCC	7 cut(s)	4, 26, 94, 610, 728, 787, 823
ScrFI	CCNGG	2 cut(s)	785, 827
SduI	GDGCHC	2 cut(s)	21, 1101
SfaNI	GCATC	3 cut(s)	528, 874, 1099
SfcI	CTRYAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	5 cut(s)	4, 26, 610, 728, 787
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	5 cut(s)	163, 355, 398, 449, 1167
SsiI	CCGC	4 cut(s)	587, 699, 981, 1011
SspI	AATATT	1 cut(s)	708
SspMI	CTAG	1 cut(s)	968
StyD4I	CCNGG	2 cut(s)	783, 825
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	3 cut(s)	441, 607, 1094
TaqI	TCGA	4 cut(s)	273, 405, 561, 1172
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	163, 355, 398, 449, 1167
TatI	WGTACW	3 cut(s)	76, 552, 1077
TfiI	GAWTC	5 cut(s)	112, 158, 323, 623, 995
Tru1I	TTAA	5 cut(s)	462, 593, 600, 834, 861
Tru9I	TTAA	5 cut(s)	462, 593, 600, 834, 861
TscAI	CASTG	3 cut(s)	26, 1045, 1183
TseI	GCWGC	4 cut(s)	679, 738, 978, 1112
TspDTI	ATGAA	2 cut(s)	171, 1031
TspGWI	ACGGA	2 cut(s)	332, 408
TspRI	CASTG	3 cut(s)	26, 1045, 1183
Van91I	CCANNNNNTGG	1 cut(s)	619
VneI	GTGCAC	1 cut(s)	1097
VpaK11BI	GGWCC	5 cut(s)	4, 26, 610, 728, 787
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	2 cut(s)	163, 355
XceI	RCATGY	1 cut(s)	1188
XspI	CTAG	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.