Rroxscaffold_5G00374980

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003753
Physical Location & Seq
Forward (+)
55879073 .. 55881591
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374980.1

Sequence Viewer

Length: 1194 bp
ATGGACCCTGTGAGAGGGCACTGGGGACTGAAGAGGAGTGTGGAAGCAGTAGCAGTTGGAGTTGTTTTAGTTGGTGTACTTTCAGTTTTTCTGGGCCTCAGACCCCAAAAGATTCAATCAAGTCGTTGTCATTTTCCGGCAATCTATAACTTTGGCGATTCAAATTCCGACACAGGTGCTTCATCAGCTGTGTTTTATCGGCTTCCTTCTCCCTATGGCAATACATTCTTTGGCAAACCTTCGGGAAGGTTATCCGATGGGCGTCTCATGATCGATTTTATAGCTCAGAAGTTGGGTTTGCCATTTTTGAGTGCTTATCTTGATTCTGTTGGAGCAAACTTCCGTCATGGAGCAAATTTTGCAACGGGAGGATCTACAATCTTGCCAATAGACGGAAAATTGTTCGAAGGAAGATTTAGCCCCATCTCCCTTGGCAAACAGTTTTCGCAATTTGCACAGCTTAAAGCTCGTGTAAATGAGGTTCTAAGTCAAGATAAAAGTTCTTATGTCAGCGCCAGCATCCCAAGACCAGAGGACTTCTCAAAGGCATTGTACACCTTCGACATGGGACAAAACGATATTTATGCAGGATTAAGGTTTAAAACGGTGGACCAAGTGCTGGAATCCATTTCCGACATGACAGCTCAGTTAGCTTTGACAATAGAGCAACTATACCATCAAGGCGGAAGAATATTTTGGATCCATAACACAGGTCCACTCGGCTGCTTGCCTATGTGTCTTGCACATAATCAGCCAGAACCCGATGACCTGGACCAGAATGGCTGTTTGATGTCTTACAATGAGGTGGCCCAGGAGTTTAACAGACAGCTCAAGGAAAGAGTGCTTAATCTAAGAGCCAAGCTCTCGGATGCAGTTCTTACATATGTTGATCTCTATAGAGCAAAATACACGCTTATTAGTGAAACAGAGAAGCATGGTTTTAGTGATCCTCTAGCTCAATGCTGCGGACGCCAAGGTGATTCTCCTTTCCATTGCGGGATGAATACTACTGCTGTCAATGGCACTGAAGTATTTGGTGGCTCTTGTAGTAATCCTGCAAAGTACATTAGCTGGGACGGTGTGCACTATTCGGATGCTGCAAACGAATGGGTAGCCAAACGAGTTATAGACGGCTCACTCTCAGACCCTCCAATTTCGATCACTGAAGCATGTCGCAAGCCTTCACAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

397

Amino Acids

43.58

Weight (kDa)

6.51

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 48 - 375 1.5e-46 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 619
AciI CCGC 3 cut(s) 684, 966, 996
AclWI GGATC 4 cut(s) 379, 694, 707, 941
AcsI RAATTY 2 cut(s) 163, 355
AcuI CTGAAG 3 cut(s) 50, 1047, 1185
AcyI GRCGYC 2 cut(s) 262, 970
AfaI GTAC 3 cut(s) 78, 554, 1064
AfiI CCNNNNNNNGG 3 cut(s) 14, 392, 619
AgsI TTSAA 2 cut(s) 116, 162
AjnI CCWGG 2 cut(s) 768, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 1 cut(s) 269
Alw44I GTGCAC 1 cut(s) 1082
AlwI GGATC 4 cut(s) 379, 694, 707, 941
AoxI GGCC 2 cut(s) 94, 807
ApaLI GTGCAC 1 cut(s) 1082
ApeKI GCWGC 3 cut(s) 723, 963, 1097
ApoI RAATTY 2 cut(s) 163, 355
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 6 cut(s) 4, 94, 610, 713, 772, 808
AsuHPI GGTGA 1 cut(s) 989
AsuII TTCGAA 1 cut(s) 405
AvaII GGWCC 4 cut(s) 4, 610, 713, 772
BaeGI GKGCMC 2 cut(s) 21, 1086
BamHI GGATCC 1 cut(s) 699
BauI CACGAG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 1086
BbvI GCAGC 3 cut(s) 710, 950, 1084
BccI CCATC 3 cut(s) 251, 431, 684
BceAI ACGGC 1 cut(s) 1147
BcgI CGANNNNNNTGC 4 cut(s) 158, 192, 566, 600
BciT130I CCWGG 2 cut(s) 770, 812
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 953
BfmI CTRYAG 1 cut(s) 895
BfoI RGCGCY 1 cut(s) 516
BisI GCNGC 3 cut(s) 724, 964, 1098
BlsI GCNGC 3 cut(s) 725, 965, 1099
Bme1390I CCNGG 2 cut(s) 770, 812
Bme18I GGWCC 4 cut(s) 4, 610, 713, 772
BmgT120I GGNCC 6 cut(s) 4, 94, 610, 713, 772, 808
BmiI GGNNCC 2 cut(s) 6, 701
BmrFI CCNGG 2 cut(s) 770, 812
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 528, 859, 1084
BmuI ACTGGG 1 cut(s) 31
BplI GAGNNNNNCTC 4 cut(s) 524, 556, 846, 878
Bpu14I TTCGAA 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 815
Bsa29I ATCGAT 1 cut(s) 273
BsaHI GRCGYC 2 cut(s) 262, 970
BsaJI CCNNGG 3 cut(s) 430, 810, 973
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 392, 619
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 991
BseBI CCWGG 2 cut(s) 770, 812
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 430, 810, 973
BseGI GGATG 4 cut(s) 519, 874, 1005, 1099
BseLI CCNNNNNNNGG 3 cut(s) 14, 392, 619
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 4 cut(s) 112, 299, 659, 1155
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 2 cut(s) 21, 1086
BseXI GCAGC 3 cut(s) 710, 950, 1084
BseYI CCCAGC 1 cut(s) 1071
BshFI GGCC 2 cut(s) 96, 809
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 1086
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 3 cut(s) 39, 582, 1088
BslI CCNNNNNNNGG 3 cut(s) 14, 392, 619
BsmAI GTCTC 1 cut(s) 269
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 3 cut(s) 39, 582, 1088
BsnI GGCC 2 cut(s) 96, 809
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 21, 1086
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
BspACI CCGC 3 cut(s) 684, 966, 996
BspANI GGCC 2 cut(s) 96, 809
BspCNI CTCAG 4 cut(s) 111, 298, 658, 1154
BspDI ATCGAT 1 cut(s) 273
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 6, 701
BspPI GGATC 4 cut(s) 379, 694, 707, 941
BspT104I TTCGAA 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 991
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 430, 810, 973
BssMI GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
BssNI GRCGYC 2 cut(s) 262, 970
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 430, 973
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 770, 812
Bst4CI ACNGT 3 cut(s) 441, 607, 1079
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 2 cut(s) 262, 970
BstAPI GCANNNNNTGC 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 552
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 517, 728, 1178
BstDEI CTNAG 6 cut(s) 98, 285, 485, 645, 851, 1141
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 519, 874, 1005, 1099
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 6 cut(s) 273, 374, 702, 892, 949, 1161
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
BstMWI GCNNNNNNNGC 5 cut(s) 185, 359, 650, 969, 1186
BstNI CCWGG 2 cut(s) 770, 812
BstNSI RCATGY 1 cut(s) 1173
BstSCI CCNGG 2 cut(s) 768, 810
BstSFI CTRYAG 1 cut(s) 895
BstSLI GKGCMC 2 cut(s) 21, 1086
BstV1I GCAGC 3 cut(s) 710, 950, 1084
BstX2I RGATCY 2 cut(s) 371, 699
BstYI RGATCY 2 cut(s) 371, 699
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 96, 809
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 4 cut(s) 519, 874, 1005, 1099
BtsIMutI CAGTG 3 cut(s) 19, 1023, 1161
Cac8I GCNNGC 3 cut(s) 517, 728, 1178
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 6 cut(s) 4, 94, 610, 713, 772, 808
ClaI ATCGAT 1 cut(s) 273
CseI GACGC 2 cut(s) 251, 978
Csp6I GTAC 3 cut(s) 77, 553, 1063
CviAII CATG 6 cut(s) 268, 347, 565, 637, 935, 1170
CviQI GTAC 3 cut(s) 77, 553, 1063
DdeI CTNAG 6 cut(s) 98, 285, 485, 645, 851, 1141
DpnI GATC 6 cut(s) 272, 373, 701, 891, 948, 1160
DpnII GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
DraI TTTAAA 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 430, 973
Eco47I GGWCC 4 cut(s) 4, 610, 713, 772
Eco57I CTGAAG 3 cut(s) 50, 1047, 1185
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 768, 810
EcoT14I CCWWGG 2 cut(s) 430, 973
ErhI CCWWGG 2 cut(s) 430, 973
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 6 cut(s) 271, 350, 568, 640, 938, 1173
FaqI GGGAC 3 cut(s) 39, 582, 1088
FatI CATG 6 cut(s) 267, 346, 564, 636, 934, 1169
FauI CCCGC 1 cut(s) 989
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 3 cut(s) 724, 964, 1098
FokI GGATG 4 cut(s) 506, 881, 1012, 1106
Fsp4HI GCNGC 3 cut(s) 724, 964, 1098
FspBI CTAG 1 cut(s) 953
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 724, 964, 1098
GsaI CCCAGC 1 cut(s) 1075
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 2 cut(s) 96, 809
HapII CCGG 1 cut(s) 137
HgaI GACGC 2 cut(s) 251, 978
HhaI GCGC 1 cut(s) 515
Hin1I GRCGYC 2 cut(s) 262, 970
Hin1II CATG 6 cut(s) 271, 350, 568, 640, 938, 1173
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HinfI GANTC 5 cut(s) 112, 158, 323, 623, 980
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 989
Hpy166II GTNNAC 5 cut(s) 77, 555, 610, 716, 1084
Hpy188I TCNGA 8 cut(s) 101, 169, 256, 288, 634, 868, 1093, 1144
Hpy188III TCNNGA 4 cut(s) 243, 268, 320, 491
Hpy8I GTNNAC 5 cut(s) 77, 555, 610, 716, 1084
HpyAV CCTTC 6 cut(s) 216, 240, 249, 401, 568, 1191
HpyCH4III ACNGT 3 cut(s) 441, 607, 1079
HpyCH4V TGCA 8 cut(s) 362, 455, 587, 743, 872, 1058, 1084, 1100
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 359, 650, 969, 1186
HpyF3I CTNAG 6 cut(s) 98, 285, 485, 645, 851, 1141
Hsp92I GRCGYC 2 cut(s) 262, 970
Hsp92II CATG 6 cut(s) 271, 350, 568, 640, 938, 1173
HspAI GCGC 1 cut(s) 513
Kzo9I GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
LmnI GCTCC 2 cut(s) 332, 350
Lsp1109I GCAGC 3 cut(s) 710, 950, 1084
LweI GCATC 3 cut(s) 528, 859, 1084
MaeI CTAG 1 cut(s) 953
MalI GATC 6 cut(s) 272, 373, 701, 891, 948, 1160
MboI GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
MboII GAAGA 3 cut(s) 43, 423, 699
MflI RGATCY 2 cut(s) 371, 699
MhlI GDGCHC 2 cut(s) 21, 1086
MluCI AATT 5 cut(s) 163, 355, 398, 449, 1152
MmeI TCCRAC 4 cut(s) 37, 192, 310, 657
MnlI CCTC 9 cut(s) 8, 27, 107, 362, 472, 526, 796, 960, 1158
MseI TTAA 5 cut(s) 462, 593, 600, 819, 846
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 770, 812
MvaI CCWGG 2 cut(s) 770, 812
MwoI GCNNNNNNNGC 5 cut(s) 185, 359, 650, 969, 1186
NdeI CATATG 1 cut(s) 883
NdeII GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
NlaIII CATG 6 cut(s) 271, 350, 568, 640, 938, 1173
NlaIV GGNNCC 2 cut(s) 6, 701
NmeAIII GCCGAG 1 cut(s) 699
NspI RCATGY 1 cut(s) 1173
NspV TTCGAA 1 cut(s) 405
PagI TCATGA 1 cut(s) 267
PfeI GAWTC 5 cut(s) 112, 158, 323, 623, 980
PflMI CCANNNNNTGG 1 cut(s) 619
PkrI GCNGC 3 cut(s) 725, 965, 1099
Psp6I CCWGG 2 cut(s) 768, 810
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 2 cut(s) 768, 810
PspN4I GGNNCC 2 cut(s) 6, 701
PspPI GGNCC 6 cut(s) 4, 94, 610, 713, 772, 808
PsrI GAACNNNNNNTAC 2 cut(s) 465, 497
PsuI RGATCY 2 cut(s) 371, 699
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 78, 554, 1064
RsaNI GTAC 3 cut(s) 77, 553, 1063
SaqAI TTAA 5 cut(s) 462, 593, 600, 819, 846
SatI GCNGC 3 cut(s) 724, 964, 1098
Sau3AI GATC 6 cut(s) 270, 371, 699, 889, 946, 1158
Sau96I GGNCC 6 cut(s) 4, 94, 610, 713, 772, 808
ScrFI CCNGG 2 cut(s) 770, 812
SduI GDGCHC 2 cut(s) 21, 1086
SfaNI GCATC 3 cut(s) 528, 859, 1084
SfcI CTRYAG 1 cut(s) 895
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 4 cut(s) 4, 610, 713, 772
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 5 cut(s) 163, 355, 398, 449, 1152
SsiI CCGC 3 cut(s) 684, 966, 996
SspI AATATT 1 cut(s) 693
SspMI CTAG 1 cut(s) 953
StyD4I CCNGG 2 cut(s) 768, 810
StyI CCWWGG 2 cut(s) 430, 973
TaaI ACNGT 3 cut(s) 441, 607, 1079
TaqI TCGA 4 cut(s) 273, 405, 561, 1157
TasI AATT 5 cut(s) 163, 355, 398, 449, 1152
TatI WGTACW 3 cut(s) 76, 552, 1062
TfiI GAWTC 5 cut(s) 112, 158, 323, 623, 980
Tru1I TTAA 5 cut(s) 462, 593, 600, 819, 846
Tru9I TTAA 5 cut(s) 462, 593, 600, 819, 846
TscAI CASTG 3 cut(s) 26, 1030, 1168
TseI GCWGC 3 cut(s) 723, 963, 1097
TspDTI ATGAA 2 cut(s) 171, 1016
TspGWI ACGGA 2 cut(s) 332, 408
TspRI CASTG 3 cut(s) 26, 1030, 1168
Van91I CCANNNNNTGG 1 cut(s) 619
VneI GTGCAC 1 cut(s) 1082
VpaK11BI GGWCC 4 cut(s) 4, 610, 713, 772
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 2 cut(s) 163, 355
XceI RCATGY 1 cut(s) 1173
XspI CTAG 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.