Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258823.1

Orthogroup ID

OG0003753

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 596

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258823.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgtactcaatagattatattctcaaacagcataatcagattgtagttttgcagcaactataccagcaaggcggaagaatattttggatccataacacgggtccactcggctgcttgcctatgtgtcttgcacataatcagccagaacccgatggcctggaccagaatggctgtttgaagtcttacaatgaggtggcccaggagtttaacagacagctcaaggaaagagtgcttaatctaagagccaagctctcggatgcagttcttacatatgttgatctctatagagcaaaatacacgcttattagtgaaacagagaagcatggttttagtgatcctctagctcaatgctgcggacgccaaggtgattctcctttccattgcgggatgaatactactgctgtcaatggcactgaagtatttggtggctcttgtagtaatcctgcaaagtacattagctgggacggtgtgcactattcggatgctgcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

6.03

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67830
fragaria_vesca	FvH4_4g26010 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011 FvH4_4g26011
malus_domestica	MD11G1248900.v1.1 MD13G1098700.v1.1 MD13G1098900.v1.1 MD16G1099800.v1.1 MD16G1100200.v1.1
prunus_persica	Prupe.1G246700_v2.0.a1
pyrus_communis	pycom13g08640 pycom16g08480 pycom16g08490
rosa_chinensis	RchiOBHm_Chr4g0433431 RchiOBHm_Chr4g0433451
rosa_laevigata	RLG00000006752 RLG00000006753
rosa_multiflora	Rmu_co8258823.1_g000001 Rmu_co8425109.1_g000001 Rmu_sc0000759.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374980 Rroxscaffold_5G00374990
rosa_rugosa	Rorug04G0268800 Rorug04G0268900
rosa_samantha	Rh4BG331400 Rh4BG331500 Rh4CG346700 Rh4CG346800 Rh4DG327700 Rh4DG327800
rosa_wichuraiana	Rw4G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 354, 384
AclWI	GGATC	3 cut(s)	82, 95, 329
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	2 cut(s)	5, 452
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	156, 198
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	4 cut(s)	217, 250, 344, 459
AluI	AGCT	4 cut(s)	217, 250, 344, 459
Alw21I	GWGCWC	1 cut(s)	474
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	3 cut(s)	82, 95, 329
AoxI	GGCC	2 cut(s)	154, 195
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	52, 111, 351, 485
AspS9I	GGNCC	3 cut(s)	101, 160, 196
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	101, 160
BaeGI	GKGCMC	1 cut(s)	474
BamHI	GGATCC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	64, 98, 338, 472
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	158, 200
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	4 cut(s)	53, 112, 352, 486
BlsI	GCNGC	4 cut(s)	54, 113, 353, 487
Bme1390I	CCNGG	2 cut(s)	158, 200
Bme18I	GGWCC	2 cut(s)	101, 160
BmgT120I	GGNCC	3 cut(s)	101, 160, 196
BmiI	GGNNCC	2 cut(s)	89, 102
BmrFI	CCNGG	2 cut(s)	158, 200
BmsI	GCATC	2 cut(s)	247, 472
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuEI	CTTGAG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	198, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	158, 200
BseDI	CCNNGG	2 cut(s)	198, 361
BseGI	GGATG	3 cut(s)	262, 393, 487
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	64, 98, 338, 472
BseYI	CCCAGC	1 cut(s)	459
BshFI	GGCC	2 cut(s)	156, 197
BsiHKAI	GWGCWC	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	156, 197
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	87, 277, 334
BspACI	CCGC	3 cut(s)	72, 354, 384
BspANI	GGCC	2 cut(s)	156, 197
BspLI	GGNNCC	2 cut(s)	89, 102
BspPI	GGATC	3 cut(s)	82, 95, 329
BsrDI	GCAATG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	198, 361
BssMI	GATC	3 cut(s)	87, 277, 334
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	158, 200
Bst4CI	ACNGT	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	3 cut(s)	262, 393, 487
BstKTI	GATC	3 cut(s)	90, 280, 337
BstMBI	GATC	3 cut(s)	87, 277, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	2 cut(s)	158, 200
BstSCI	CCNGG	2 cut(s)	156, 198
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	64, 98, 338, 472
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	156, 197
BtsCI	GGATG	3 cut(s)	262, 393, 487
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	101, 160, 196
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	4, 451
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	2 cut(s)	4, 451
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	89, 279, 336
DpnII	GATC	3 cut(s)	87, 277, 334
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	101, 160
Eco57I	CTGAAG	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	156, 198
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	326
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	377
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	53, 112, 352, 486
FokI	GGATG	2 cut(s)	269, 400
Fsp4HI	GCNGC	4 cut(s)	53, 112, 352, 486
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	4 cut(s)	53, 112, 352, 486
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	156, 197
HgaI	GACGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	104, 472
Hpy188I	TCNGA	3 cut(s)	39, 256, 481
Hpy8I	GTNNAC	2 cut(s)	104, 472
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	52, 131, 260, 446, 472, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	87, 277, 334
LpnPI	CCDG	9 cut(s)	77, 143, 156, 170, 176, 185, 212, 445, 456
Lsp1109I	GCAGC	4 cut(s)	64, 98, 338, 472
LweI	GCATC	2 cut(s)	247, 472
MaeI	CTAG	1 cut(s)	341
MalI	GATC	3 cut(s)	89, 279, 336
MboI	GATC	3 cut(s)	87, 277, 334
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	474
MnlI	CCTC	2 cut(s)	184, 348
MseI	TTAA	2 cut(s)	207, 234
MspR9I	CCNGG	2 cut(s)	158, 200
MvaI	CCWGG	2 cut(s)	158, 200
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	87, 277, 334
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	89, 102
NmeAIII	GCCGAG	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	54, 113, 353, 487
Psp6I	CCWGG	2 cut(s)	156, 198
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	2 cut(s)	156, 198
PspN4I	GGNNCC	2 cut(s)	89, 102
PspPI	GGNCC	3 cut(s)	101, 160, 196
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	5, 452
RsaNI	GTAC	2 cut(s)	4, 451
SaqAI	TTAA	2 cut(s)	207, 234
SatI	GCNGC	4 cut(s)	53, 112, 352, 486
Sau3AI	GATC	3 cut(s)	87, 277, 334
Sau96I	GGNCC	3 cut(s)	101, 160, 196
ScrFI	CCNGG	2 cut(s)	158, 200
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	6 cut(s)	195, 219, 252, 346, 367, 461
SfaNI	GCATC	2 cut(s)	247, 472
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	2 cut(s)	101, 160
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	3 cut(s)	72, 354, 384
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	156, 198
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	467
TatI	WGTACW	2 cut(s)	3, 450
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	207, 234
Tru9I	TTAA	2 cut(s)	207, 234
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	4 cut(s)	52, 111, 351, 485
TspDTI	ATGAA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	418
VneI	GTGCAC	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	101, 160
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.